mRNA_S-ischiensis_contig101.1709.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1709.1
Unique NamemRNA_S-ischiensis_contig101.1709.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:174334..174878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.8607585-UTR-S-ischiensis_contig101:174333..1743501622815548.8607585-UTR-S-ischiensis_contig101:174333..174350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 174334..174350 +
1695739762.9124753-UTR-S-ischiensis_contig101:174333..1743501695739762.9124753-UTR-S-ischiensis_contig101:174333..174350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 174334..174350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.87317-CDS-S-ischiensis_contig101:174350..1748781622815548.87317-CDS-S-ischiensis_contig101:174350..174878Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 174351..174878 +
1695739762.9231703-CDS-S-ischiensis_contig101:174350..1748781695739762.9231703-CDS-S-ischiensis_contig101:174350..174878Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 174351..174878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1709.1prot_S-ischiensis_contig101.1709.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 174351..174878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1709.1

>prot_S-ischiensis_contig101.1709.1 ID=prot_S-ischiensis_contig101.1709.1|Name=mRNA_S-ischiensis_contig101.1709.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MTAVVIPGPSGPASSSSPKPPTTTAHHTGPTTSEAAAGAGAMSPPKNARN
GTQRQGAFVAAAAAVGAPAPATPGPAGPALVPALVRGPAPTLAAGGARPR
RGAFVAAIAAMAPAPRAKQEEGLGAAREGGAARGGTPNRGGSGGRGGGGA
APGTPHWGGGGGRGGGGVALGTPNRG
back to top

mRNA from alignment at S-ischiensis_contig101:174334..174878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1709.1 ID=mRNA_S-ischiensis_contig101.1709.1|Name=mRNA_S-ischiensis_contig101.1709.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=545bp|location=Sequence derived from alignment at S-ischiensis_contig101:174334..174878+ (Schizocladia ischiensis KU_0333)
CCGCCGCCGCCGCCACGATGACGGCGGTCGTGATTCCCGGACCCTCGGGG
CCGGCCTCCTCCTCTTCCCCGAAACCCCCGACAACAACCGCCCACCACAC
GGGGCCAACAACGTCAGAGGCCGCGGCGGGGGCGGGGGCCATGTCTCCCC
CGAAGAATGCCCGCAACGGCACACAGCGGCAGGGCGCTTTCGTGGCGGCA
GCCGCAGCCGTCGGTGCCCCCGCCCCGGCGACCCCGGGCCCAGCGGGCCC
AGCCCTGGTCCCGGCCCTGGTCCGGGGCCCGGCCCCGACCCTGGCCGCCG
GGGGGGCCCGCCCCCGACGGGGCGCGTTTGTCGCGGCGATCGCGGCCATG
GCCCCAGCCCCACGGGCCAAGCAGGAGGAGGGGCTAGGTGCTGCACGAGA
AGGAGGAGCAGCGCGGGGGGGAACACCGAATAGAGGTGGCAGTGGTGGCC
GCGGCGGCGGCGGAGCGGCACCAGGCACGCCTCATTGGGGTGGCGGTGGT
GGCCGCGGAGGAGGAGGAGTGGCGCTGGGCACACCGAATAGAGGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig101:174334..174878+

>mRNA_S-ischiensis_contig101.1709.1 ID=mRNA_S-ischiensis_contig101.1709.1|Name=mRNA_S-ischiensis_contig101.1709.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig101:174334..174878+ (Schizocladia ischiensis KU_0333)
ATGACGGCGGTCGTGATTCCCGGACCCTCGGGGCCGGCCTCCTCCTCTTC
CCCGAAACCCCCGACAACAACCGCCCACCACACGGGGCCAACAACGTCAG
AGGCCGCGGCGGGGGCGGGGGCCATGTCTCCCCCGAAGAATGCCCGCAAC
GGCACACAGCGGCAGGGCGCTTTCGTGGCGGCAGCCGCAGCCGTCGGTGC
CCCCGCCCCGGCGACCCCGGGCCCAGCGGGCCCAGCCCTGGTCCCGGCCC
TGGTCCGGGGCCCGGCCCCGACCCTGGCCGCCGGGGGGGCCCGCCCCCGA
CGGGGCGCGTTTGTCGCGGCGATCGCGGCCATGGCCCCAGCCCCACGGGC
CAAGCAGGAGGAGGGGCTAGGTGCTGCACGAGAAGGAGGAGCAGCGCGGG
GGGGAACACCGAATAGAGGTGGCAGTGGTGGCCGCGGCGGCGGCGGAGCG
GCACCAGGCACGCCTCATTGGGGTGGCGGTGGTGGCCGCGGAGGAGGAGG
AGTGGCGCTGGGCACACCGAATAGAGGTATGACGGCGGTCGTGATTCCCG
GACCCTCGGGGCCGGCCTCCTCCTCTTCCCCGAAACCCCCGACAACAACC
GCCCACCACACGGGGCCAACAACGTCAGAGGCCGCGGCGGGGGCGGGGGC
CATGTCTCCCCCGAAGAATGCCCGCAACGGCACACAGCGGCAGGGCGCTT
TCGTGGCGGCAGCCGCAGCCGTCGGTGCCCCCGCCCCGGCGACCCCGGGC
CCAGCGGGCCCAGCCCTGGTCCCGGCCCTGGTCCGGGGCCCGGCCCCGAC
CCTGGCCGCCGGGGGGGCCCGCCCCCGACGGGGCGCGTTTGTCGCGGCGA
TCGCGGCCATGGCCCCAGCCCCACGGGCCAAGCAGGAGGAGGGGCTAGGT
GCTGCACGAGAAGGAGGAGCAGCGCGGGGGGGAACACCGAATAGAGGTGG
CAGTGGTGGCCGCGGCGGCGGCGGAGCGGCACCAGGCACGCCTCATTGGG
GTGGCGGTGGTGGCCGCGGAGGAGGAGGAGTGGCGCTGGGCACACCGAAT
AGAGGT
back to top