mRNA_S-ischiensis_contig101.1704.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 6.580e-19 Identity = 53/133 (39.85%), Postives = 69/133 (51.88%), Query Frame = 2
Query: 575 CRYNTAMCCWTRDSTPQHDTELADNTDVCS-----IPGFRNRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLIGGEGSVIKFTACAPKKGKENDL 958
C YNT MCCW ++ + DNTDVCS PG HCHGF W E++S AL ++++ D + Y G +P +P C C+E MP VSRADCT+ R GS F AC+ +NDL
Sbjct: 59 CDYNTWMCCWDG----RNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDE---KAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGS--DFMACS-----KNDL 177
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 2.500e-18 Identity = 53/133 (39.85%), Postives = 69/133 (51.88%), Query Frame = 2
Query: 575 CRYNTAMCCWTRDSTPQHDTELADNTDVCS-----IPGFRNRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLIGGEGSVIKFTACAPKKGKENDL 958
C YNT MCCW ++ + DNTDVCS PG HCHGF W E++S AL ++++ D + Y G +P +P C C+E MP VSRADCT+ R GS F AC+ +NDL
Sbjct: 123 CDYNTWMCCWDG----RNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDE---KAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGS--DFMACS-----KNDL 241
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S1G0X7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0X7_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.010e-18 Identity = 69/220 (31.36%), Postives = 96/220 (43.64%), Query Frame = 2
Query: 491 ERQLSNRNIGSKVDVIY---GSDSKYAWM-------DGCRYNTAMCCWTRD----------STPQH----DTELADNTDVCSIP------------GFR------NRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRL--------IGGEGSV-----------IKFTACAPKKGKENDLEAH 967
E +L N + G+++ IY S+ +W D C+ N AMCC+T+D +TP D ADNTD+C + GF +HCHGFAW ED + + A YV YDH ARGY +P +P C C+E+MP+V+RADCT+ + + E V I F +C NDL A+
Sbjct: 121 ENRLKN-DPGARIIDIYKSLASNQGLSWPNSISNFEDKCKLNAAMCCFTQDRQANDNNGNCATPYEENCIDASPADNTDICYVDMERAPTSSRTSQGFAIFEKNAEEDSHCHGFAWAEDPTDSSARFSANNLFYVSMYDHLTARGYARNVPGAPMCACVEQMPVVTRADCTQIDIQSETAEFSLRTEKGVTNLTATISDLKIAFNSCQGANNNNNDLTAY 339
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S3VF94_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VF94_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.960e-18 Identity = 62/206 (30.10%), Postives = 86/206 (41.75%), Query Frame = 2
Query: 575 CRYNTAMCCWTRDSTPQH--------------DTELADNTDVC-------------SIPGFR----NRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLIGG--------------EGSVIKFTACAPKKGKENDLEAHVRADRTDGGVGMPGGAGLFKLNLVGK--CP 1051
C + A CCW RD + D ++ADNTD+C GF HCHGFAW D + S +A +V +DH RGY +P SP C C+E MP+V+RADCT+ + E +++ AC ++NDL A V+ DG + +F +VGK CP
Sbjct: 563 CTAHAAQCCWPRDRQAKDNNGNCAKPYDSQCVDKDVADNTDLCYNELDKAPYANGVDASGFSVYDYEGPVHCHGFAWSPDDNETTSRYKANALFFVSMFDHMYTRGYVENIPGSPMCGCVEHMPVVTRADCTQTNVQESYKFTKTDSGYIPTIEKVKLQYQACQGAGNQDNDLSAFVQQLVNDGKLSTAE-QDIFSERVVGKNNCP 767
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S3VDC8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDC8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.240e-17 Identity = 70/248 (28.23%), Postives = 101/248 (40.73%), Query Frame = 2
Query: 497 QLSNRNIGSKVDVIYGSDSKYAWM---------DGCRYNTAMCCWTRDSTPQH--------------DTELADNTDVCSIP------------------GFRNRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLI-----------GGEGSV----IKFTACAPKKGKENDLEAHVRADRTDGGVGMPGGAGLFKLNLVGKCPKNERVSQ 1072
+LSN N G ++ IY + S+ + + C N AMCC+ +D D ADNTD+C + G +HCHGFAW EDS+ + + Y+ YDH RGY +P +P C C+E+MP+V+RADCT+ + G + I F AC +NDL A+ TD G F+ +VGK E + +
Sbjct: 120 KLSN-NPGERIKDIYKNISQSKGITFPDTLTNFEDCDLNAAMCCFVQDRQAGDGNGNCKMPYDERCTDANPADNTDICYVDMARSPTSSRTSGGFALFEGEEEDDSHCHGFAWAEDSTDTSARFKGNNLFYISMYDHLTQRGYARNVPGAPMCGCVEKMPVVTRADCTQIDITEDVTFTYTEADGLSADISNLDINFNACQGANNNDNDLSAYYER-LTDEGKIPTEKRDTFEEIVVGKTYCREAIDK 365
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S2GSB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSB4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.830e-17 Identity = 67/215 (31.16%), Postives = 92/215 (42.79%), Query Frame = 2
Query: 518 GSKVDVIYGSDSK---YAWMD------GCRYNTAMCCWTRD----------STPQHD------TELADNTDVCSIPGFR----NRRT--------------HCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTE----PRLIGGEG-----------SVIKFTACAPKKGKENDLEAHVRADRTD 988
G ++ I+ + ++ + W D C N AMCCW +D + P D + ADN DVC + R +R T HCHGFAW ED S + +A YV +DH RGY +P +P C C+E+MP+V+RADCTE ++I S I F AC NDL A+V R +
Sbjct: 144 GDRIGNIHRNHAQSNGFTWPDDLQNFESCDLNAAMCCWVQDRQAGDGNGNCNRPYDDEDGCVDADPADNVDVCYVDMSRAPTSSRTTAGIAIFEGEDEDDSHCHGFAWAEDPSHESARFKANNLFYVSFFDHLRNRGYVKNVPGAPMCACVEQMPVVTRADCTEIDVTEKVIFSYSDTDGLTATILESEITFNACQGANDNNNDLAAYVERLRIE 358
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S2PJA3_9STRA (Hypothetical protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PJA3_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.260e-17 Identity = 57/184 (30.98%), Postives = 76/184 (41.30%), Query Frame = 2
Query: 566 MDGCRYNTAMCCWTRDSTPQH--------------DTELADNTDVCSI-------------------PGFRNRRT---HCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRL-----------IGGEGSV----IKFTACAPKKGKENDLEA 964
+D C +A CCW +D D + DNTD+C + PG N HCHGFAW D + +A YV YDH RGY + +P C C+E+MP+VSRADCT+ + G G++ ++F AC K NDLEA
Sbjct: 175 LDECELKSAQCCWPQDRQANDNNGNCAKAYDDNCVDKDPGDNTDLCMVDLSYAPENNFVDASGYTFFPGDNNNGEGPIHCHGFAWANDDMDYYTRYKANNLFYVSMYDHMYKRGYVRNIAGAPMCGCVEKMPIVSRADCTQMNVKEKYSFKKNDGTGFTGTLRETTLEFQACQGANSKNNDLEA 358
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.840e-16 Identity = 56/182 (30.77%), Postives = 77/182 (42.31%), Query Frame = 2
Query: 575 CRYNTAMCCWTRD----------STPQH----DTELADNTDVCSIPGFRNRRT-------------------HCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTE---------------PRLIGGEGSV-IKFTACAPKKGKENDLEAHVR 973
C T MCCW+ D +TP D++ DNTD+C++ R + HCHGFAW +DS + + YV YDH RGY +P +P C C+E+MP+VSR+DCTE R V + F AC N+LEA+ +
Sbjct: 2 CDLRTVMCCWSADRQANDNNGNCATPYDTNCKDSDPGDNTDLCAVDMARTTSSSSHVDDGFALFEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAETASWTFQWSADHDRFTARLDEVEVDFNACQGVNNNNNNLEAYYK 183
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: A0A7S2R0W0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0W0_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.550e-16 Identity = 62/208 (29.81%), Postives = 90/208 (43.27%), Query Frame = 2
Query: 494 RQLSNRNIGSKVDVIYGSDSKYAWMD-----GCRYNTAMCCWTRD--------STPQHDTELAD---NTDVCSIPGFRNRRT------------------HCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLIGGEGSV-----------------IKFTACAPKKGKENDLEA 964
RQ +NR +G+ DV Y ++ W D C+ TAMCC+ D + ++D + AD N+D+C R+ + HCHGFAW + S ++ +V YDH RGY Q+P +P C C+E MP V+RADCT+ + G ++ I+F AC NDL A
Sbjct: 292 RQDANR-VGTVYDV-YAEQTQITWPDYRQFKDCKLRTAMCCFVADRQFDDDNGNCAENDCDDADPNDNSDLCYTDFTRSEESAHVEDGYSIYGDASEGDFHCHGFAWGNNHGS-DDVMKGNNLFFVSMYDHMYTRGYTEQVPGAPMCGCVENMPSVTRADCTQTEITGLSVTINYVEATKRLSSEATFDKIEFNACEGLNDTNNDLSA 496
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 4.520e-16 Identity = 51/127 (40.16%), Postives = 66/127 (51.97%), Query Frame = 2
Query: 593 MCCWTRDSTPQHDTELADNTDV-----CSIPGFRNRRTHCHGFAWDEDSSSLRSTVRALTWEYVHNYDHWLARGYHGQLPDSPQCECIERMPMVSRADCTEPRLIGGEGSVIKFTACAPKKGKENDL 958
MCCW S+ + ++DNTDV PG HCHG W E SS AL Y H+ + +GY G +P +P C+C+ERMP VSR+DC++ R +GS F AC PK NDL
Sbjct: 1 MCCW---SSRVGEEPVSDNTDVYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEE---KGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGS--DFMAC-PK----NDL 114 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig101.1704.1 >prot_S-ischiensis_contig101.1704.1 ID=prot_S-ischiensis_contig101.1704.1|Name=mRNA_S-ischiensis_contig101.1704.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=306bp MARFSGVSRFGFQVACIGFVMSSFLMLLGTTRAHERQLSNRNIGSKVDVIback to top mRNA from alignment at S-ischiensis_contig101:113563..123712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig101.1704.1 ID=mRNA_S-ischiensis_contig101.1704.1|Name=mRNA_S-ischiensis_contig101.1704.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10150bp|location=Sequence derived from alignment at S-ischiensis_contig101:113563..123712+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig101:113563..123712+ >mRNA_S-ischiensis_contig101.1704.1 ID=mRNA_S-ischiensis_contig101.1704.1|Name=mRNA_S-ischiensis_contig101.1704.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1836bp|location=Sequence derived from alignment at S-ischiensis_contig101:113563..123712+ (Schizocladia ischiensis KU_0333)back to top |