mRNA_S-ischiensis_contig101.1698.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1698.1
Unique NamemRNA_S-ischiensis_contig101.1698.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:74581..75205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.7604098-CDS-S-ischiensis_contig101:74580..752041622815548.7604098-CDS-S-ischiensis_contig101:74580..75204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 74581..75204 +
1695739762.8922653-CDS-S-ischiensis_contig101:74580..752041695739762.8922653-CDS-S-ischiensis_contig101:74580..75204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 74581..75204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1698.1prot_S-ischiensis_contig101.1698.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 74581..75204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1698.1

>prot_S-ischiensis_contig101.1698.1 ID=prot_S-ischiensis_contig101.1698.1|Name=mRNA_S-ischiensis_contig101.1698.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=208bp
PGQARQSPALANRRRRRKRRRRGPSPCSGGTGVGGAGVGVGSGMGGVGGV
GPAVEARRTEADLAVAPVVAPVAQPGAAAAAAAVATPAPEAAEALVALPA
PAAASAGGGERPTAEAARRPTTVAAATGGEVVPICEYIAAIAGVVAAVTA
AATGTGTAFQATTGAPGVLGVEAARRAAAAAAAASAAEQETGGGIGRGAG
VVAPTTTA
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mRNA from alignment at S-ischiensis_contig101:74581..75205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1698.1 ID=mRNA_S-ischiensis_contig101.1698.1|Name=mRNA_S-ischiensis_contig101.1698.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=625bp|location=Sequence derived from alignment at S-ischiensis_contig101:74581..75205+ (Schizocladia ischiensis KU_0333)
CCCGGCCAGGCGCGGCAGTCCCCTGCCCTTGCGAACAGGAGGAGGAGGAG
GAAGAGGAGGAGGAGGGGGCCTTCCCCCTGCTCGGGAGGGACGGGTGTTG
GAGGAGCTGGTGTTGGTGTTGGTAGTGGCATGGGAGGCGTTGGCGGCGTC
GGGCCTGCCGTGGAGGCAAGACGCACCGAAGCCGATCTGGCCGTGGCGCC
CGTTGTAGCACCCGTAGCACAACCCGGCGCTGCTGCAGCCGCTGCAGCTG
TCGCCACCCCTGCTCCTGAGGCTGCTGAGGCGCTGGTGGCCCTCCCCGCC
CCCGCCGCCGCCAGCGCGGGGGGAGGAGAGAGGCCCACTGCAGAGGCAGC
ACGACGACCCACCACAGTCGCTGCTGCTACAGGGGGTGAGGTGGTCCCAA
TCTGCGAGTACATCGCCGCGATTGCCGGTGTTGTTGCAGCAGTCACAGCC
GCTGCCACCGGAACCGGAACCGCCTTCCAAGCCACTACTGGGGCACCCGG
TGTACTTGGGGTCGAAGCAGCACGACGCGCGGCTGCTGCCGCCGCCGCCG
CCTCCGCTGCTGAACAAGAAACAGGAGGCGGCATCGGCAGAGGTGCTGGT
GTTGTGGCCCCCACCACCACCGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig101:74581..75205+

>mRNA_S-ischiensis_contig101.1698.1 ID=mRNA_S-ischiensis_contig101.1698.1|Name=mRNA_S-ischiensis_contig101.1698.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig101:74581..75205+ (Schizocladia ischiensis KU_0333)
CCCGGCCAGGCGCGGCAGTCCCCTGCCCTTGCGAACAGGAGGAGGAGGAG
GAAGAGGAGGAGGAGGGGGCCTTCCCCCTGCTCGGGAGGGACGGGTGTTG
GAGGAGCTGGTGTTGGTGTTGGTAGTGGCATGGGAGGCGTTGGCGGCGTC
GGGCCTGCCGTGGAGGCAAGACGCACCGAAGCCGATCTGGCCGTGGCGCC
CGTTGTAGCACCCGTAGCACAACCCGGCGCTGCTGCAGCCGCTGCAGCTG
TCGCCACCCCTGCTCCTGAGGCTGCTGAGGCGCTGGTGGCCCTCCCCGCC
CCCGCCGCCGCCAGCGCGGGGGGAGGAGAGAGGCCCACTGCAGAGGCAGC
ACGACGACCCACCACAGTCGCTGCTGCTACAGGGGGTGAGGTGGTCCCAA
TCTGCGAGTACATCGCCGCGATTGCCGGTGTTGTTGCAGCAGTCACAGCC
GCTGCCACCGGAACCGGAACCGCCTTCCAAGCCACTACTGGGGCACCCGG
TGTACTTGGGGTCGAAGCAGCACGACGCGCGGCTGCTGCCGCCGCCGCCG
CCTCCGCTGCTGAACAAGAAACAGGAGGCGGCATCGGCAGAGGTGCTGGT
GTTGTGGCCCCCACCACCACCGCCCCCGGCCAGGCGCGGCAGTCCCCTGC
CCTTGCGAACAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGGCCTTCCC
CCTGCTCGGGAGGGACGGGTGTTGGAGGAGCTGGTGTTGGTGTTGGTAGT
GGCATGGGAGGCGTTGGCGGCGTCGGGCCTGCCGTGGAGGCAAGACGCAC
CGAAGCCGATCTGGCCGTGGCGCCCGTTGTAGCACCCGTAGCACAACCCG
GCGCTGCTGCAGCCGCTGCAGCTGTCGCCACCCCTGCTCCTGAGGCTGCT
GAGGCGCTGGTGGCCCTCCCCGCCCCCGCCGCCGCCAGCGCGGGGGGAGG
AGAGAGGCCCACTGCAGAGGCAGCACGACGACCCACCACAGTCGCTGCTG
CTACAGGGGGTGAGGTGGTCCCAATCTGCGAGTACATCGCCGCGATTGCC
GGTGTTGTTGCAGCAGTCACAGCCGCTGCCACCGGAACCGGAACCGCCTT
CCAAGCCACTACTGGGGCACCCGGTGTACTTGGGGTCGAAGCAGCACGAC
GCGCGGCTGCTGCCGCCGCCGCCGCCTCCGCTGCTGAACAAGAAACAGGA
GGCGGCATCGGCAGAGGTGCTGGTGTTGTGGCCCCCACCACCACCGCC
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