mRNA_S-ischiensis_contig101.1697.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1697.1
Unique NamemRNA_S-ischiensis_contig101.1697.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.180e-54
Identity = 134/197 (68.02%), Postives = 151/197 (76.65%), Query Frame = 1 
Query:    1 RELQRKLLSPQRLR----LSPAEEKQRQEERHTAAQRNRAQLANGMQKKLKLKEERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKVDEVLFMHKLSVEDLKITLQMRLDEVDRRIQSGRRRRQQLLRGISDRQRKRTFDKAQQMSQRRLEAESEALERWEQLQKRLEAVHLRRSQREAE 579
            RELQ+KL SPQR      LS AE K RQE R   A+ NRAQLA+G+ +KLK  EERARGVR+R EE  ++A    ++K+  AD RR+EHR  IVRKAND  SKV+EVLFM+KL+VEDLKITLQM+L EVDRRIQSGR RRQQLL GISDRQRKRT DKA QMS+RRLEAES A  RWE LQKRLEAV  RR  RE E
Sbjct: 1153 RELQKKLSSPQRKPQRKILSAAEAKLRQERRQMVAELNRAQLASGITEKLKQHEERARGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGRARRQQLLAGISDRQRKRTRDKAAQMSERRLEAESAAAMRWEALQKRLEAVQQRRRDRERE 1349
[Close]
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Match: A0A6H5J638_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J638_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.140e-41
Identity = 104/153 (67.97%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:   91 AQRNRAQLANGMQKKLKLKEERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKVDEVLFMHKLSVEDLKITLQMRLDEVDRRIQSGRRRRQQLLRGISDRQRKRTFDKAQQMSQRRLEAESEALERWEQLQKRLEAV 549
            A+ NRAQLA+G+ +KLK  EERARGVR+R EE  ++A    ++K+  AD RR+EHR  IVRKAND  SKV+EVLFM+KL+VEDLKITLQM+L EVDRRIQSGR RRQQLL GISDRQRKRT DKA QMS+RRLEAES A  R  Q ++R EA+
Sbjct:   84 AELNRAQLASGVTEKLKQHEERARGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGRARRQQLLAGISDRQRKRTRDKAAQMSERRLEAES-AANRHTQARERREAM 235
[Close]
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Match: A0A7S2WA51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WA51_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.380e-13
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:    1 RELQRKLLSPQRLRLSPAEEKQRQEERHTAAQRNRAQLANGMQKKLKLKEERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKVDEVLFMHKLSVEDLKITLQMRLDEVDR 381
            R +  KL SP R RLSPAE K++QEERH  A RNR ++    Q++L+   E+AR V+ R  + R  A   +  KL  ++ R  +H   I RKA +  SKV+EV+F++ L+ + ++ TLQ RL EV+R
Sbjct:  390 RAMHHKLSSPDRKRLSPAEAKRKQEERHETAARNRDRIEEERQRRLEQAAEKARQVKVRQGQKRASAGGKLALKLSASETRHAQHIQAIARKAANENSKVEEVIFINGLTADAVRATLQQRLVEVER 516
[Close]
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Match: A0A7S2WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB00_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.600e-13
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:    1 RELQRKLLSPQRLRLSPAEEKQRQEERHTAAQRNRAQLANGMQKKLKLKEERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKVDEVLFMHKLSVEDLKITLQMRLDEVDR 381
            R +  KL SP R RLSPAE K++QEERH  A RNR ++    Q++L+   E+AR V+ R  + R  A   +  KL  ++ R  +H   I RKA +  SKV+EV+F++ L+ + ++ TLQ RL EV+R
Sbjct:  543 RAMHHKLSSPDRKRLSPAEAKRKQEERHETAARNRDRIEEERQRRLEQAAEKARQVKVRQGQKRASAGGKLALKLSASETRHAQHIQAIARKAANENSKVEEVIFINGLTADAVRATLQQRLVEVER 669
[Close]
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Match: A0A835ZAD3_9STRA (SCAPER_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.430e-11
Identity = 75/229 (32.75%), Postives = 98/229 (42.79%), Query Frame = 1 
Query:   25 SPQRLRLSPAEEKQRQEERHTAAQRNRAQLANGMQKKLKLKEERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKVDEV------------------------------------------------------------------------------------------LFMHKLSVEDLKITLQMRLDEVDRRIQSGRRRRQQLLRGISDRQ 441
            SP+R R SPAE KQ+ ++R  AAQ+NR QLA+G+Q+K + + + AR V+ R ++    A   I++++  A  RR  H S +VRKAND   KV EV                                                                                          LFM+KL+VEDLKITLQMRL EV+RRI  GR RRQ  L GI+ RQ
Sbjct:  645 SPERKRPSPAEAKQKHDQRQHAAQQNREQLASGLQEKARARSDHARRVKTRQDQRLAEAQEVIRRRMDDAGARREAHISSVVRKANDENCKVYEVSTAHRSVEVAIEVEYHNIFQSAASGARPTTRTARSTSVVRKANDENGKVYEVSATHRSVEVDVGVAYHHHLPVSXXXXXXXXXXXXXXXXLFMNKLTVEDLKITLQMRLHEVERRIMGGRMRRQHHLVGIAARQ 873
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5K8_ECTSI1.180e-5468.02Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J638_9PHAE4.140e-4167.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WA51_9STRA6.380e-1342.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WB00_9STRA7.600e-1342.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835ZAD3_9STRA1.430e-1132.75SCAPER_N domain-containing protein n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:63108..71914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue1.5e-50
Seed eggNOG ortholog2880.D7G5K8
Preferred nameSCAPER
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0015630,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG OGsKOG4722@1,KOG4722@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1009
Cds size1005
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.548606-CDS-S-ischiensis_contig101:63109..633511622815549.548606-CDS-S-ischiensis_contig101:63109..63351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 63110..63351 -
1695739763.3030877-CDS-S-ischiensis_contig101:63109..633511695739763.3030877-CDS-S-ischiensis_contig101:63109..63351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 63110..63351 -
1622815549.5604303-CDS-S-ischiensis_contig101:63652..638181622815549.5604303-CDS-S-ischiensis_contig101:63652..63818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 63653..63818 -
1695739763.3150835-CDS-S-ischiensis_contig101:63652..638181695739763.3150835-CDS-S-ischiensis_contig101:63652..63818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 63653..63818 -
1622815549.5715272-CDS-S-ischiensis_contig101:65292..653741622815549.5715272-CDS-S-ischiensis_contig101:65292..65374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 65293..65374 -
1695739763.3250992-CDS-S-ischiensis_contig101:65292..653741695739763.3250992-CDS-S-ischiensis_contig101:65292..65374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 65293..65374 -
1622815549.5853524-CDS-S-ischiensis_contig101:65786..659291622815549.5853524-CDS-S-ischiensis_contig101:65786..65929Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 65787..65929 -
1695739763.3375063-CDS-S-ischiensis_contig101:65786..659291695739763.3375063-CDS-S-ischiensis_contig101:65786..65929Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 65787..65929 -
1622815549.596189-CDS-S-ischiensis_contig101:67718..677931622815549.596189-CDS-S-ischiensis_contig101:67718..67793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 67719..67793 -
1695739763.3515048-CDS-S-ischiensis_contig101:67718..677931695739763.3515048-CDS-S-ischiensis_contig101:67718..67793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 67719..67793 -
1622815549.6072056-CDS-S-ischiensis_contig101:69051..692191622815549.6072056-CDS-S-ischiensis_contig101:69051..69219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 69052..69219 -
1695739763.3617618-CDS-S-ischiensis_contig101:69051..692191695739763.3617618-CDS-S-ischiensis_contig101:69051..69219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 69052..69219 -
1622815549.6214578-CDS-S-ischiensis_contig101:71785..719141622815549.6214578-CDS-S-ischiensis_contig101:71785..71914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 71786..71914 -
1695739763.3696404-CDS-S-ischiensis_contig101:71785..719141695739763.3696404-CDS-S-ischiensis_contig101:71785..71914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 71786..71914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1697.1prot_S-ischiensis_contig101.1697.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 63110..71914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1697.1

>prot_S-ischiensis_contig101.1697.1 ID=prot_S-ischiensis_contig101.1697.1|Name=mRNA_S-ischiensis_contig101.1697.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=335bp
RELQRKLLSPQRLRLSPAEEKQRQEERHTAAQRNRAQLANGMQKKLKLKE
ERARGVRWRMEEVRIRANSSIQKKLRLADLRRREHRSEIVRKANDCTSKV
DEVLFMHKLSVEDLKITLQMRLDEVDRRIQSGRRRRQQLLRGISDRQRKR
TFDKAQQMSQRRLEAESEALERWEQLQKRLEAVHLRRSQREAEMRRRLQV
AQERRAAIQSQLAITSASSSSGAQSGTGAATTTTTHATASAPASAGMGTT
GAGAGAGTTADRGLMLSSPVGPGDSKRPTTEGQKSIKADSEVEACESGDA
DDPSAGGREAAGDGGKTPSKDGLAGPGAAGIRAEA
back to top

mRNA from alignment at S-ischiensis_contig101:63108..71914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1697.1 ID=mRNA_S-ischiensis_contig101.1697.1|Name=mRNA_S-ischiensis_contig101.1697.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8807bp|location=Sequence derived from alignment at S-ischiensis_contig101:63108..71914- (Schizocladia ischiensis KU_0333)
AGGGAGCTGCAGAGGAAGTTGCTGAGCCCCCAGCGGCTGAGGCTGTCTCC
GGCGGAGGAGAAGCAGCGGCAGGAGGAGAGGCACACCGCGGCTCAGAGGA
ACCGGGCGCAGCTGGCCAACGGCATGCAGGTGATTATGCAGTGTACTTTA
CTACCTCCTTTTCTGTATTGCTTCCAACCAACTAGCTACATGTATTGCTT
CCAACTAACTAGCTACAGTTTGCTCTATGACTCGGAGGTAAGTATGTATG
GATATGATACTGGGTATCTCAAAGGAACCGGGCACAGCTGGCCAGTGGCA
TGCAGGTTAGTCGGGAGTTTCGAATAACCCAAGCAGTTGGGAGGATGAGT
TTCAAATACCAAGTAGCTAGGAGGATGAGTTTCAAAGAACCCAAGTGGTT
GGGAGGAGGAGAGGCACGCTGCGGCTCAGAGGAACCGGGCACACCTGGCC
AATAACATGCAGGTTAGTTGGGAGGATGATTTTCAAAGTATCCAAGTAGT
TAGGAGAAGGAGTTTTAAAGAACCCAAGTAGTTAGGAGGATGAGTTTCAA
AGAACCCAAAAGTGGTTGGGAGGAGGAGAGGCACGCTGCGGCTCAGAGGA
ACCGGGCACAGCTGGCCAATGGCATGCAGGTTAGTTGGGAGGATGAGTTT
CAAAGTATCGAAGTAGTTAGGAGGATGAGTTTTAAAGAACCCACGTGTTA
GGAGGATGAGTTTCAAAGTATCCAAGTAGTTAGGAGAAGGAGTTTTAAAG
AACCCAAGTAGTTAGGAGGATGAGTTTCAAAGAACCCAAGTAGTTGGGAG
AATTGAGCTTCAAAGAAACCAAGTACAGTAGCTAGGAGGATGAGTCTCAA
AGAAACCCAAGTACTTGAGAGCATGATTTTCAAGTATCCAAGTAGCTACG
AGAAGGAGTTTTAAGAACCCAAGTAGTTAGGAGGATGAGTTTCAAAGAAC
CCCAAGTACGGTAGTTGGGAGGGTGAGTTTTAAAGAACCCAAGTAGCTAG
GAGAATGAGTTTCAAATAGCCCACTTAGTTACGGAGGATGAGTTTCACCT
AACCCAAGTAGTTAAAGAGGATGAGTTTCAAAGAACCCCCAAGTACAGTA
GTTGGGGGGGTGACTTTTTAGGCACACTGCGGCTCAGAGGAACCGGGCAC
AGCTGGCCAATGGCGTGCAGGTGACTCTCTACATCAGTGCTACTATTACT
AGCAGTGCTGCCATGGTACGGGTACAAGGGAACCGGTCACGGCTGGCCAA
TGGCATGCAGGTGACTAGCAGTGATGGAATATCGATCATTAGAAAAGTAC
TTCGAAGTAGTTATCGTGCTCTGATTTTGTGGGTGGCATTACTGAGTACT
TCGGAGTACTTGGACTTAGTGTGCGTCAAACTATCGAATATCGACTATCG
ATAGATACATACAGCAGGTGGTACTAGTTAGTTCATTTGGCCTTTAAGAG
AAAATTGAGTAATTTATGCTCTTTCCTAACGTTTTGTTCAACTCACTGAA
TAGTTGGCCGCTTCATCTGAAGGTATCACGCCAAAACCTTGTACCTGAGC
CTTCAGAACAAATCTCAAGTTGAAGGTCAGCACGTTGAAGTTGAAGGTTT
TTCGCCCCGACTGTAGATCAGTACTGTCGATGAATAGATTGATTTACTTA
GACATTCCATCACTGGTGACTACTTCCATAGTGCGCTGTGTTGTGCTGTG
CTGCTGTACCGTGCGCCCCCTACTGTAGCTGTAGCTGCAGTGCATACTAC
TTCGAAGTACGAGCACGAGCACTTCTTTCTGCGTGCAGCACCCCATACTG
TATGCTGCTATTGCGTTTTGGCTCTGAAGTGTGTGGAGTTGCCCTACTCT
ACATTATTTGGACCCTAACTATAAACCTGACGACGTCGCAACAAAAAACG
CATTCGTGTACACACAAACAACGGCAGAAAAGGCTCAAGCTCAAGGAGGA
GAGGGCGCGCGGGGTGCATCCCGGACCCTAAATCAAACCCTGACAACGTC
GCAACGACAAAAGAAAATCCGCAAAACAAAACAACACGTGCAGAAAAGCT
CAAGCTCAAGGAGGAGAGGGCCCGCTAGCTCTAACCCTGACGTCGTCGCG
ACAAATAAAACAACCCGCGAAACAAACCAATGGCAGAAAAAGCTCACCAA
GGAAACCCTGATGATGTTGCAACAGCAAAACAAACCACAAAACACGTGCA
GAAAAAGGTCAAGCTCAGGAGCTCACACACACCCAAAACAAAATGATGGC
AGAAAAAGCTCAAGCTCAAGGAGGAGAGGGCGTGCGGGGCGTCGTAACTC
TAGCCCCGACGACGTCGAAAAAACAAACTGTATAGCAATGGCAGAAAAAG
CTCAAGCTCAAGATATATAACCCTAACGACGTCGCGACAAAACAAACAAA
CCACAACACAACAGCAGCAAGCTAAAGCTCAAGGAATCCCTGACGTCGCG
ACAACAACAACAAAAAACGCACAACAAACGTGCAGAAAAGGCTCAAGCTC
AAGGAGGAGAGGGCCCGCTAGCTCTAACCCTGACGTCGTCGCGACAACTA
AAACAACCTGCGAAACAAACCAATGGCAGAAAAAGCTCACCAAGGAAACC
CTGATGACGTTGCAACAGCAAAACAAACCACAAAACACGTGCAGAAAAAG
GTCAAGCTCAGGAGCTCACACACACCCAAAACAAAATGATGGCAGAAAAA
GCTCAAGCTCAAGGAGGAGCGGGCGCGCGGGGTGCGCTGGCGCATGGAGG
AGGTGCGCATTCGGGCCAACTCCTCCATACAGAAGAAGCTCAGGCTGGCC
GACCTGAGGCGAAGGGAGCACCGCAGCGAGATTGTGCGCAAGGCCAACGA
CTGCACCTCTAAGGTGACTTGGAGGTTATTTGAGGCCTAGTTAGCCTTCA
TTTTAGGTCTACTGTAGTTGCTCCTACTTACTTCGAAGTACCTCTAGTTA
AGGGCCTGAAAGGGGACTGCAGTGAGACTGTGCGCAAGGCCAACGGCTAC
ACCTCCAAGGTGACTTAGAGGTTAACTAGGGCCTACTTAGCCTTCATGTT
TGGTGTAGTTGCTCCTAACTACTTCGAAGAACCTCTAGCTAAGAGCCTGA
AAGGGCACCGCCGTGAGATTGTGCGCACGGTCAACGACTGCACCTCGAAG
GTGACACACGCGCCTCCATTTACATATACTTCGAAGTATGTGAGTGCTCG
AGTACTACTACTGCAGAGTAGAACCTCAACATGCTCGACCAAATCTAACT
TTTCTTTCGTGTTGGGCATACCGTGGAGTCCCAACATGCTCGGCCAAATC
CAACTTGTCTTTCATGTTGGGCAGGTGGGTGAGGTCTCGAGTACTACTGT
GGAGTACAGTATAGAGCCTCAACATGCTCGACCAAATCGAACTTGTCTTT
GGTGTTGGGCAGGTGGATATGATTGCTTGAGTACTGTACTTACAACTGTA
GTAGAGCCTCAACATGCTCGACGAAATCTAACTTGTCTTTGGTGTTGGGC
ATCCAGTAGAGCCTCAACATTCTTGAAATCTAACTGGTCTCTCGTGCTCG
GTAGGTGGATGAGATCCTCAATACTTACCTCGCACGTATGAGTGCTCGAG
TACTGTATAGTAGAGCCTCAACATGCCCGACCAAATCCAACTTGTCTTTC
GTGTTGGGCAGGTGGATGAGGCCGAGTACTGTGCAGTAGAGCCTCAACAT
GCTCGACTAAATCTAACTTTTCTTTCGTGTTGGGCAGGCGGATGAAGTCC
TCGATACTTACGTATGAGTGCTTGAGCACTGTACTTGCAACTGTAGTAGA
GCCTCAACATGCCCGACCAAATCTAGCTTGTCTTTGGTGTTGGGCTGGCG
GATGAAGTCCTGTTCGTGCACAAGCTGAACTTTTCTTCCGTGTTGGGCAA
ATCTAACTTTCTTTCGTGTACTTTTCTTTCGTGTTGGGCAGGTGGGTGAG
GTCCTGTTGTTCATGCACAAGCTGAGTGTGGAGGACCGGAAGATTACATA
CTAGCATAATATATGAATTATTGATGTAGTATTCGATATATATATATATA
TATATATACGTGTTGTTATGTACTTCGAAGTATGAAGTATATTTTAATAT
TCGATATTCCATGTTGTGCAGGTGGATGAGGTCCTGTTCATGCACAAGCT
GAGCGTGGAGGACCTGAAGATTACCCTGCAGATGCGCCTTGACGAGGTGG
GCACTGTACTGTACTGTACTGTACTGTGATGTACTGTACTGTGCTGTACT
GTACCGTACCGTACTGTACTGTGGTTTGTAGGACCTCAAGATTACCCTGC
AGATGCGGCTTGGCGACTTGACCATTGCACTTGCTTTGTTTGCATGTCCT
TCTCGCACTTGAACTGCACTGTACTGTACCGTACCGAACTGTGCTGTGCT
GTGCTGCACTGTAGTTGCTTTCCTTGCGTGTCCTTCCTGCACTTGTACTG
TGCTGTGCTGTACTTGCTTTCGTTGCTGTCCTTCCTGCACCTGCATTGAA
CACAGCTCTGTACTGTACTGTACCGTACCTTGCCGTACTGTACTGTGCTG
TACTGTACTGTACTGTACTTGCTTTCCTTGCACGTCCTTTCTGCACTTGT
ACTGTGCTGTGCTGCACTGCACTGTGATGTACTGTGCTGCACTGTACTGT
ACCGTACTGTACTTGCTTTCCTTGATGTCCTTCCTGCACTTGTACTGTGC
TGTGCTGTACTTCGAAGGACTTGGTTTGATTGCTGTCCTTCCTGCACCTG
TACCGAACACTGCTCTGTACTGTACTGTACCGTACTGTACTGTGCTGTGC
TGTGCTGTACTGTACTGTACTTGCTTTCCTTGCAGATCCTTCCTGCACTT
GTACTGTGCTGTACTGTGCTGTGCTGTACTGTACTGTACTGCACCGTACT
ATACTTGCTTTCCTTGCATGTCCTTCCTGCACTTGTACTGTTCTGTAGTG
TACTGTACCGTACCGTACTGTACTGCACTGTGCTGTACTGTGCTGTACGT
TACGGTACTGTGATATACTGTGTGTTGTACTTGTACTGTACTGTACTGTA
CTGTACTGTGCTGTACCGTACCGTACCGTACCGTACCGTACCGTACCGTA
CCGTACCGTACCGTACCGTACTGTACCGTACCGTACCGTACCGTATACTA
CCGTACTGTACTGTACAGTGATGCGCTGTACTGTTCTACTTGTACTGCAC
TGTACTCCACTGTACCGTACTGTACTGTGCTGTACTGTACTGTACAATGC
TGTGCCCCACTGTACTTGCTTTCCATGCATGTCCTTCCTGCACTTGAGTG
TTGTACTGTACCGTACTGTACTGTACTGTACTACTGTAAACCATACTGCA
CTGTGCTGTACTGTACTGTACTGTGCTGTACTGGACCGTACTGTACTTCC
TTTCTTGCATGCCCTTCCTGCACTTGTACTGTTGTGTACTGTACTGTACC
GTACCGTACTGTACTGCACTGTACTGTACTGTAATGTATTGTGCTGTCCT
GTACTGTACTGTGCTATGCTGTACTGTACTTGCTGTCCTTGCATGTCCTT
CCTGCCCATGTGTGCACACACGCATGCACCCACCCACCCACCCACCCACC
CACCCACCCACATACTCGCCTGTTGGCGCGTGTGTGCAAACCACAGGTGG
ACCGCCGCATCCACTCCGGGCGGCGGCGGCGGCAGCAGCTCCTGAGGGGC
ATATGGGACCGCCAGCGCAAGCGCACCTTCGAACAATCACTGGAATATCT
AAGAAAATCAGCCTATTTATTGACAGTGCTGATCTATACATCTATCATAG
TCGATATTCGATAGTTTGACCCACACTAGATCCAAGTAGCTACAGCAGTA
GCGCCACCCACAACATCGGTCGGGCCTGATAGCCATCTAGGATACTGATC
GATATTTCCTTCACTTAGTTAGTAACGCCACCCACAAAATCAGTCGAGCC
TGATATCCATCTACTGATCGCTGCAAATCACGCAGGTGGACCGCCGCATC
CAGTCCGGGCGGCGGCGGCGGCAGCAGCTCCTGAGAGGCATATCGGACCG
CCAGCGAAAGCGCACTTTCGACAAGGCACAGCAGATGTCGCAGCGGCGCC
TGGAGGCAGAGTCGGAGGCACTGGAGAGGTGGGAGTAGCCATAATACCAA
AGTGCGGTTCTTTTTTTTGCCCAAATGGTTTTATCGATGCCGAAAATTTC
GCCCAAACTGCGATCGAACACCAGCCCAAGTATCGGAAAAATACCGATAT
TTTGATGAAACGCCATTCAAGGTATGGAAACCCCACGGATATTGGCTGGT
ACTAAGAAACCATAGCACAAAATTGCGATCGCTATTTTTGGTGCCCGGGC
CGCCCCATGAAGGACGCATCGGATGACCGTGAAATTTTGACACATGAAAG
AGGTCGATGAGTACTTCGAAGCACGTTCGTGTCGCTCTAGCTTTTCATAT
CACAACATCACATTGACCGAGCAACAGGTCAATCGATATTCGATAAAAAC
TGTTGGGGCAAAAAAAATCGCGCTCTTGTGCCATGATTAGGTGGGAGCAG
CTGCAGAAACGCCTGGAGGCCGTGCACCTGCGGAGGAGCCAGCGCGAGGC
AGAGATGCGGAGGCGTCTGCAGGTACGACCAATGATGGAACACTTTGAAG
TATCGATCAGTAGATAGTCATCGGGCTCGACTGATTTTGTGGGTGGCGTT
ACTACTTAACTACTTGGGTTTAGTGTAGGTCAAACTATCGAATATCGACT
ATCGATAGCTGCAGAAACGCCTGGAGGCCGTGCACCTGCGGAGGAGCCAG
CGTGAGGCCGAGATGCGGAGGCGTCTGCAGGTACCCTTATTTCAAGTACA
TGTCGAATGCAATGTGCTGCCAAGTGCAGGGCAGTCACAATTAAGAGTGA
CTCGAACTCGGCTCTACTGAACAGTTGTATGCTACAGTAGTAGCACAGCG
TACGGCTACTATAGTACTGTACTGTACAGCAGTACTTGTGGTACAGTAGT
AGTCTCACGGAGGGGGGCACATGTACTCACTTGGACTACAACTGTACGGT
AGTCGGGTACTCGTACTTCCAAGTTCAAGCGCGACTATCCATCTCTACTT
TGCGGTCCGAAAGTGCTAGCAAGGAGGCTGCAGGTACTCATACAACTGTA
CGGTAGTCGAGTAGGAGGTTCTTCCAAGTTCAAGCGCTTGTTTCCATCTC
TACCTAGTGTGTTCCGAAAGTGTTCGTAAGGAGGCTGCAGGCACAGTACA
ACTGTACTCTACGGTAGTCAAGCACTGTACAGTCAGTCTCCGTAGTTAAA
AACACGTTTCCCCCGATAGCAGGGGCACCTTCGCCGTCCGTTTTTGACAG
TACAAGTATGGTGCTCACTAGATGGGGTTGTCTTGTCCATGCCCCTGGCT
CATTCCACGCCGATTTGCAGCGCGATCGAGGCAGCAGTTCAGCCGTTGTC
GATATCTGAAAATCCGAAAGATCCTTTTTTAACTACAGTAGTTCGCTTGG
CTGTACTTCCAATTTCGAGCGCTTGTATCCATCTCTACTTACAGTAGCGT
TCCGAAAGTGTTGGGCAACCTGCCCAATGCCAACTTGACCCTGACACCCC
AGAAACCCTACCGTGTTGTGCACTCTACATGCTCTGAAACTCGGCCTCCT
TTTATCCCCGACTGCTGCTGGAACCCTCAGGTGGCCCAGGAGAGGAGGGA
GGCCATCCAGTCCCAGCTCGCCATCTCGAATGCTTCTTCCGGCCGTGCAG
TGTACATGCTCTGAAGCCCAACCTCCTTTATCCCCGAATGTTGTTGCCCC
GGCCGGATCCTCAGGTGGCCCACCGTGTACTAGTGTGCCACATGCTCTGA
AACCCAACCTCCGTTTATCCCTGAATGCTGTCCCGGCCGGAACCCTCAGG
TGGCCCAGGAGAGGAGGGAGGCCATCCAGTCACAGCTGGCCGGTCTTTGT
GCACTAATACGAGAACACTCAATTCTTGAATGGGATAAGCACTAATACCA
GAACACTCAATCTCACACACGTGCGATTGTACCTCGATACAATTTATATG
AATCACCCCTTTTGTCCCCGAATGCTGTCCTGGCCGGAACCCTCAGGTGG
CCCAGGAGAGGAGGGCGGCTATCCAGTCACAGCTGGCCATCACAAGCGCC
TCCTCTTCCTCCGGCGCGCAGTCGGGCACCGGTGCCGCCACCACGACCAC
CACACATGCAACAGCCTCAGCCCCGGCCTCAGCTGGCATGGGAACAACGG
GCGCAGGTGCAGGCAGTGATGGAATGTCTAAGCAAATCGACCTATGTCTC
GACAGTACCGATCTACTCGTATGTATCTGTCTGTAGTTGACATTCGATAG
CTTGACCCATACTCATAAATCCAAGCAGGTACATCTTTTTGCCCTGCGAG
GGGAAGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAGCCTTTTGGCACG
GGGCCAGGAACTCGCCTCTTATCTACCGCTCAAAATAGTAGCGCCACCCG
CAAAATCAGTCGAGCCCGGTAGCTATCCACTGATCGATATTCCATCACCG
GGAACAGGTGCAGGTGCAGGCACCACGGCCGACAGGGGGTTGATGTTGAG
CTCGCCGGTGGGACCGGGGGACAGCAAGAGACCCACTACGGAAGGGCAGA
AATCCATCAAGGCTGACTCGGAGGTGGAGGCGTGTGAGAGTGGTGACGCC
GACGACCCCAGTGCCGGTGGACGTGAGGCGGCCGGTGATGGGGGGAAGAC
GCCTTCCAAGGATGGGCTGGCCGGGCCTGGGGCTGCAGGGATCAGGGCCG
AGGCCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig101:63108..71914-

>mRNA_S-ischiensis_contig101.1697.1 ID=mRNA_S-ischiensis_contig101.1697.1|Name=mRNA_S-ischiensis_contig101.1697.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2010bp|location=Sequence derived from alignment at S-ischiensis_contig101:63108..71914- (Schizocladia ischiensis KU_0333)
AGGGAGCTGCAGAGGAAGTTGCTGAGCCCCCAGCGGCTGAGGCTGTCTCC
GGCGGAGGAGAAGCAGCGGCAGGAGGAGAGGCACACCGCGGCTCAGAGGA
ACCGGGCGCAGCTGGCCAACGGCATGCAGAGGGAGCTGCAGAGGAAGTTG
CTGAGCCCCCAGCGGCTGAGGCTGTCTCCGGCGGAGGAGAAGCAGCGGCA
GGAGGAGAGGCACACCGCGGCTCAGAGGAACCGGGCGCAGCTGGCCAACG
GCATGCAGAAAAAGCTCAAGCTCAAGGAGGAGCGGGCGCGCGGGGTGCGC
TGGCGCATGGAGGAGGTGCGCATTCGGGCCAACTCCTCCATACAGAAGAA
GCTCAGGCTGGCCGACCTGAGGCGAAGGGAGCACCGCAGCGAGATTGTGC
GCAAGGCCAACGACTGCACCTCTAAGAAAAAGCTCAAGCTCAAGGAGGAG
CGGGCGCGCGGGGTGCGCTGGCGCATGGAGGAGGTGCGCATTCGGGCCAA
CTCCTCCATACAGAAGAAGCTCAGGCTGGCCGACCTGAGGCGAAGGGAGC
ACCGCAGCGAGATTGTGCGCAAGGCCAACGACTGCACCTCTAAGGTGGAT
GAGGTCCTGTTCATGCACAAGCTGAGCGTGGAGGACCTGAAGATTACCCT
GCAGATGCGCCTTGACGAGGTGGATGAGGTCCTGTTCATGCACAAGCTGA
GCGTGGAGGACCTGAAGATTACCCTGCAGATGCGCCTTGACGAGGTGGAC
CGCCGCATCCAGTCCGGGCGGCGGCGGCGGCAGCAGCTCCTGAGAGGCAT
ATCGGACCGCCAGCGAAAGCGCACTTTCGACAAGGCACAGCAGATGTCGC
AGCGGCGCCTGGAGGCAGAGTCGGAGGCACTGGAGAGGTGGACCGCCGCA
TCCAGTCCGGGCGGCGGCGGCGGCAGCAGCTCCTGAGAGGCATATCGGAC
CGCCAGCGAAAGCGCACTTTCGACAAGGCACAGCAGATGTCGCAGCGGCG
CCTGGAGGCAGAGTCGGAGGCACTGGAGAGGTGGGAGCAGCTGCAGAAAC
GCCTGGAGGCCGTGCACCTGCGGAGGAGCCAGCGCGAGGCAGAGATGCGG
AGGCGTCTGCAGGTGGGAGCAGCTGCAGAAACGCCTGGAGGCCGTGCACC
TGCGGAGGAGCCAGCGCGAGGCAGAGATGCGGAGGCGTCTGCAGGTGGCC
CAGGAGAGGAGGGCGGCTATCCAGTCACAGCTGGCCATCACAAGCGCCTC
CTCTTCCTCCGGCGCGCAGTCGGGCACCGGTGCCGCCACCACGACCACCA
CACATGCAACAGCCTCAGCCCCGGCCTCAGCTGGCATGGGAACAACGGGC
GCAGGTGCAGGTGGCCCAGGAGAGGAGGGCGGCTATCCAGTCACAGCTGG
CCATCACAAGCGCCTCCTCTTCCTCCGGCGCGCAGTCGGGCACCGGTGCC
GCCACCACGACCACCACACATGCAACAGCCTCAGCCCCGGCCTCAGCTGG
CATGGGAACAACGGGCGCAGGTGCAGGTGCAGGCACCACGGCCGACAGGG
GGTTGATGTTGAGCTCGCCGGTGGGACCGGGGGACAGCAAGAGACCCACT
ACGGAAGGGCAGAAATCCATCAAGGCTGACTCGGAGGTGGAGGCGTGTGA
GAGTGGTGACGCCGACGACCCCAGTGCCGGTGGACGTGAGGCGGCCGGTG
ATGGGGGGAAGACGCCTTCCAAGGATGGGCTGGCCGGGCCTGGGGCTGCA
GGGATCAGGGCCGAGGCCGTGCAGGCACCACGGCCGACAGGGGGTTGATG
TTGAGCTCGCCGGTGGGACCGGGGGACAGCAAGAGACCCACTACGGAAGG
GCAGAAATCCATCAAGGCTGACTCGGAGGTGGAGGCGTGTGAGAGTGGTG
ACGCCGACGACCCCAGTGCCGGTGGACGTGAGGCGGCCGGTGATGGGGGG
AAGACGCCTTCCAAGGATGGGCTGGCCGGGCCTGGGGCTGCAGGGATCAG
GGCCGAGGCC
back to top