mRNA_S-ischiensis_contig101.1693.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1693.1
Unique NamemRNA_S-ischiensis_contig101.1693.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:43224..43916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size693
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1693.1prot_S-ischiensis_contig101.1693.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 43320..43823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.653666-UTR-S-ischiensis_contig101:43223..433191622815548.653666-UTR-S-ischiensis_contig101:43223..43319Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 43224..43319 +
1695739762.8455956-UTR-S-ischiensis_contig101:43223..433191695739762.8455956-UTR-S-ischiensis_contig101:43223..43319Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 43224..43319 +
1622815548.6866274-UTR-S-ischiensis_contig101:43823..439161622815548.6866274-UTR-S-ischiensis_contig101:43823..43916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 43824..43916 +
1695739762.8708067-UTR-S-ischiensis_contig101:43823..439161695739762.8708067-UTR-S-ischiensis_contig101:43823..43916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 43824..43916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.6742494-CDS-S-ischiensis_contig101:43319..438231622815548.6742494-CDS-S-ischiensis_contig101:43319..43823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 43320..43823 +
1695739762.8559613-CDS-S-ischiensis_contig101:43319..438231695739762.8559613-CDS-S-ischiensis_contig101:43319..43823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 43320..43823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1693.1

>prot_S-ischiensis_contig101.1693.1 ID=prot_S-ischiensis_contig101.1693.1|Name=mRNA_S-ischiensis_contig101.1693.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
MYLGQFRSFLPLLLLTLVEYSICFFVCLKSVRGGWKIICCPGCPGLLVLV
LSFFVCLKSVHGGRKIIVAWVVLDCWCFCLPMSLCSICDVVRNSLPLLRH
HAPCPSLPVTCAHLSVQLKISASKVRFDPDTGDLLISGNMDVACTDDCGK
VTCKTMSGHLWHPSQWL*
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mRNA from alignment at S-ischiensis_contig101:43224..43916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1693.1 ID=mRNA_S-ischiensis_contig101.1693.1|Name=mRNA_S-ischiensis_contig101.1693.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=693bp|location=Sequence derived from alignment at S-ischiensis_contig101:43224..43916+ (Schizocladia ischiensis KU_0333)
TTAACCCCTCCGTACCGTGTACACATGAGGTGAACTGCAACCAGGACACC
TGCTGTGACAGTGAGTTGACACACTGTCCCTTATGCGCGCTTGAGCATGT
ATTTGGGACAGTTCCGCAGTTTCCTCCCTCTACTGCTATTGACGTTAGTG
GAATACAGTATATGTTTCTTCGTGTGCTTGAAAAGTGTCCGCGGAGGGTG
GAAGATCATCTGTTGCCCGGGTTGTCCTGGACTGCTGGTGCTTGTGCTTA
GTTTTTTCGTGTGCTTGAAAAGTGTCCACGGAGGGAGGAAGATCATTGTT
GCCTGGGTTGTCCTGGACTGCTGGTGCTTTTGCCTTCCCATGTCCTTGTG
CAGCATTTGTGACGTCGTTCGAAACTCCTTGCCCTTGCTGAGACACCACG
CCCCATGCCCCTCCCTCCCTGTCACTTGTGCGCATTTGTCGGTGCAGCTC
AAGATATCTGCTTCGAAGGTACGTTTTGACCCCGACACTGGCGATCTTCT
TATCTCAGGCAACATGGACGTAGCTTGCACCGACGACTGTGGAAAGGTCA
CCTGCAAAACCATGTCTGGACATCTTTGGCATCCAAGTCAGTGGTTGTAA
CAACGGGGGGAATGCTGCAAATAATTTGTGCATAGCATACGCGGAAAACC
CAGCACGAGTTGGGGGGCCCGGGGCATCAGGACCACAGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig101:43224..43916+

>mRNA_S-ischiensis_contig101.1693.1 ID=mRNA_S-ischiensis_contig101.1693.1|Name=mRNA_S-ischiensis_contig101.1693.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig101:43224..43916+ (Schizocladia ischiensis KU_0333)
ATGTATTTGGGACAGTTCCGCAGTTTCCTCCCTCTACTGCTATTGACGTT
AGTGGAATACAGTATATGTTTCTTCGTGTGCTTGAAAAGTGTCCGCGGAG
GGTGGAAGATCATCTGTTGCCCGGGTTGTCCTGGACTGCTGGTGCTTGTG
CTTAGTTTTTTCGTGTGCTTGAAAAGTGTCCACGGAGGGAGGAAGATCAT
TGTTGCCTGGGTTGTCCTGGACTGCTGGTGCTTTTGCCTTCCCATGTCCT
TGTGCAGCATTTGTGACGTCGTTCGAAACTCCTTGCCCTTGCTGAGACAC
CACGCCCCATGCCCCTCCCTCCCTGTCACTTGTGCGCATTTGTCGGTGCA
GCTCAAGATATCTGCTTCGAAGGTACGTTTTGACCCCGACACTGGCGATC
TTCTTATCTCAGGCAACATGGACGTAGCTTGCACCGACGACTGTGGAAAG
GTCACCTGCAAAACCATGTCTGGACATCTTTGGCATCCAAGTCAGTGGTT
GTAAATGTATTTGGGACAGTTCCGCAGTTTCCTCCCTCTACTGCTATTGA
CGTTAGTGGAATACAGTATATGTTTCTTCGTGTGCTTGAAAAGTGTCCGC
GGAGGGTGGAAGATCATCTGTTGCCCGGGTTGTCCTGGACTGCTGGTGCT
TGTGCTTAGTTTTTTCGTGTGCTTGAAAAGTGTCCACGGAGGGAGGAAGA
TCATTGTTGCCTGGGTTGTCCTGGACTGCTGGTGCTTTTGCCTTCCCATG
TCCTTGTGCAGCATTTGTGACGTCGTTCGAAACTCCTTGCCCTTGCTGAG
ACACCACGCCCCATGCCCCTCCCTCCCTGTCACTTGTGCGCATTTGTCGG
TGCAGCTCAAGATATCTGCTTCGAAGGTACGTTTTGACCCCGACACTGGC
GATCTTCTTATCTCAGGCAACATGGACGTAGCTTGCACCGACGACTGTGG
AAAGGTCACCTGCAAAACCATGTCTGGACATCTTTGGCATCCAAGTCAGT
GGTTGTAA
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