Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 962 |
| Cds size | 741 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815545.7085922-UTR-S-ischiensis_contig100:306391..306612 | 1622815545.7085922-UTR-S-ischiensis_contig100:306391..306612 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig100 306392..306612 + |
| 1695739760.9231102-UTR-S-ischiensis_contig100:306391..306612 | 1695739760.9231102-UTR-S-ischiensis_contig100:306391..306612 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig100 306392..306612 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815545.720559-CDS-S-ischiensis_contig100:306612..307353 | 1622815545.720559-CDS-S-ischiensis_contig100:306612..307353 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 306613..307353 + |
| 1695739760.9311984-CDS-S-ischiensis_contig100:306612..307353 | 1695739760.9311984-CDS-S-ischiensis_contig100:306612..307353 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 306613..307353 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig100.1686.1 >prot_S-ischiensis_contig100.1686.1 ID=prot_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=247bp
MDSRIPTIGLYVQSWQRVCYRNNAHCTRVTVQYCTVQHSYSDSTARLSTS
LQVQILRVHYLLTRAQAHASKRPRARSGGRRRRWRRRWRLPSPHQGARGL
IRGGARSSSGVGGGGGVGGGGGGGRLLWAAVEAGPDLPYPRHPSRPCPAE
GKARGLDGPPPARRRCGPDHPRPRHPGRTRRAEGASHGPESPPAAGCRCM
GACQGYPHHTLAHRSWTLPWQGPAGRLLRPPGVPGAWPAPVVAGQER back to topmRNA from alignment at S-ischiensis_contig100:306392..307353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig100.1686.1 ID=mRNA_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=962bp|location=Sequence derived from alignment at S-ischiensis_contig100:306392..307353+ (Schizocladia ischiensis KU_0333)
GCCTAGGCAGGGGGCTACTCGCTGCCTCAAGTGTAACAACACGAGGCGTG
TACTCGCACCGGCTAGGCCCCAAGGGGCCTCCTACAGTGGTTTATAGTAC
AGAAGAATGCAATGTATATATGTACTCATTGGGTTGTCTTGCGACATAAC
CGTGCGTGCAGCGCCGACAGCCCTAAGTCAAAACTTTGGGGTTGCCCTGC
GACAGGAGTAGCTTATAAGCCATGGACTCTCGCATCCCAACTATAGGACT
ATACGTGCAAAGCTGGCAGCGCGTATGCTACAGAAACAATGCGCACTGTA
CTCGAGTTACAGTGCAGTACTGTACAGTACAGCACTCGTACAGTGACAGC
ACTGCACGGCTAAGTACTTCATTGCAAGTGCAGATACTTCGAGTACACTA
CTTACTCACACGAGCCCAGGCACATGCCAGCAAGCGCCCCCGTGCCCGGA
GCGGCGGGCGTCGCAGACGATGGCGGCGGCGGTGGCGACTGCCATCCCCT
CACCAGGGGGCCCGGGGACTGATCCGCGGAGGAGCCAGAAGCAGCAGTGG
TGTCGGCGGCGGCGGTGGTGTTGGCGGCGGCGGTGGCGGGGGTCGTCTCT
TATGGGCTGCGGTGGAAGCCGGCCCCGATCTCCCATACCCCCGCCACCCC
AGCCGCCCATGCCCCGCGGAGGGCAAGGCCCGCGGCCTTGATGGCCCACC
ACCCGCCCGACGCCGCTGCGGGCCTGATCACCCTCGCCCCCGCCACCCCG
GCCGCACACGCCGCGCAGAGGGCGCGTCCCACGGCCCTGAGAGCCCACCA
GCAGCCGGATGCCGCTGCATGGGCGCATGCCAAGGATACCCTCACCACAC
GCTGGCACACCGTTCATGGACGCTCCCTTGGCAAGGGCCTGCTGGTCGGC
TCCTGCGCCCTCCGGGTGTACCGGGAGCGTGGCCGGCCCCGGTTGTTGCC
GGCCAGGAGCGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig100:306392..307353+ >mRNA_S-ischiensis_contig100.1686.1 ID=mRNA_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1482bp|location=Sequence derived from alignment at S-ischiensis_contig100:306392..307353+ (Schizocladia ischiensis KU_0333)
ATGGACTCTCGCATCCCAACTATAGGACTATACGTGCAAAGCTGGCAGCG
CGTATGCTACAGAAACAATGCGCACTGTACTCGAGTTACAGTGCAGTACT
GTACAGTACAGCACTCGTACAGTGACAGCACTGCACGGCTAAGTACTTCA
TTGCAAGTGCAGATACTTCGAGTACACTACTTACTCACACGAGCCCAGGC
ACATGCCAGCAAGCGCCCCCGTGCCCGGAGCGGCGGGCGTCGCAGACGAT
GGCGGCGGCGGTGGCGACTGCCATCCCCTCACCAGGGGGCCCGGGGACTG
ATCCGCGGAGGAGCCAGAAGCAGCAGTGGTGTCGGCGGCGGCGGTGGTGT
TGGCGGCGGCGGTGGCGGGGGTCGTCTCTTATGGGCTGCGGTGGAAGCCG
GCCCCGATCTCCCATACCCCCGCCACCCCAGCCGCCCATGCCCCGCGGAG
GGCAAGGCCCGCGGCCTTGATGGCCCACCACCCGCCCGACGCCGCTGCGG
GCCTGATCACCCTCGCCCCCGCCACCCCGGCCGCACACGCCGCGCAGAGG
GCGCGTCCCACGGCCCTGAGAGCCCACCAGCAGCCGGATGCCGCTGCATG
GGCGCATGCCAAGGATACCCTCACCACACGCTGGCACACCGTTCATGGAC
GCTCCCTTGGCAAGGGCCTGCTGGTCGGCTCCTGCGCCCTCCGGGTGTAC
CGGGAGCGTGGCCGGCCCCGGTTGTTGCCGGCCAGGAGCGCATGGACTCT
CGCATCCCAACTATAGGACTATACGTGCAAAGCTGGCAGCGCGTATGCTA
CAGAAACAATGCGCACTGTACTCGAGTTACAGTGCAGTACTGTACAGTAC
AGCACTCGTACAGTGACAGCACTGCACGGCTAAGTACTTCATTGCAAGTG
CAGATACTTCGAGTACACTACTTACTCACACGAGCCCAGGCACATGCCAG
CAAGCGCCCCCGTGCCCGGAGCGGCGGGCGTCGCAGACGATGGCGGCGGC
GGTGGCGACTGCCATCCCCTCACCAGGGGGCCCGGGGACTGATCCGCGGA
GGAGCCAGAAGCAGCAGTGGTGTCGGCGGCGGCGGTGGTGTTGGCGGCGG
CGGTGGCGGGGGTCGTCTCTTATGGGCTGCGGTGGAAGCCGGCCCCGATC
TCCCATACCCCCGCCACCCCAGCCGCCCATGCCCCGCGGAGGGCAAGGCC
CGCGGCCTTGATGGCCCACCACCCGCCCGACGCCGCTGCGGGCCTGATCA
CCCTCGCCCCCGCCACCCCGGCCGCACACGCCGCGCAGAGGGCGCGTCCC
ACGGCCCTGAGAGCCCACCAGCAGCCGGATGCCGCTGCATGGGCGCATGC
CAAGGATACCCTCACCACACGCTGGCACACCGTTCATGGACGCTCCCTTG
GCAAGGGCCTGCTGGTCGGCTCCTGCGCCCTCCGGGTGTACCGGGAGCGT
GGCCGGCCCCGGTTGTTGCCGGCCAGGAGCGC back to top
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