mRNA_S-ischiensis_contig100.1673.1 (mRNA) Schizocladia ischiensis KU_0333
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A835ZQB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQB3_9STRA) HSP 1 Score: 289 bits (740), Expect = 9.280e-87 Identity = 152/282 (53.90%), Postives = 190/282 (67.38%), Query Frame = 3 Query: 213 DKDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGARSQGRRFANAVFCAAPSGNDDYEAEVAATAREVW--DGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRHKGRTFLVADSA--PMTRQEICSAALMHPLYGERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYVQAKAQEQS 1046
+ DL IVGAGYLG IG QW+ P A+V+GETRSEAKH+ L A G+ P LR +R +++ N VFCAAPSGNDDY EV A AR++W +GTG FVFTSSGGVY+E GG+V E SPV SP+ KL+ AE ACL AGGCVVRLAGLYSLERG H+FWL++ EV +SP G +NLL+Y+DAAGA+VA L + + T L D A P+TR +IC AAL HPL+ R P F + V G K YD + TR LGW PR+ SF ++ ++ +
Sbjct: 35 NNDLYIVGAGYLGKRIGNQWQQLHPDAKVFGETRSEAKHEDLRAEGMEPVLRASRGV-QKYTNVVFCAAPSGNDDYAGEVTAAARDLWNAEGTGCFVFTSSGGVYEEKEGGVVREVSPVGSSPRNMKLLQAEGACLEAGGCVVRLAGLYSLERGAHSFWLARGEVDASPDGLINLLSYDDAAGAVVATLEHSGRALTLLAGDDADPPLTRAQICEAALRHPLFAARAPPAFRQSAGSVDDRG-------KVYDGAATRRILGWAPRHKSFTEFIDEAVRQSN 308
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A6H5JFX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX5_9PHAE) HSP 1 Score: 254 bits (649), Expect = 8.610e-73 Identity = 141/314 (44.90%), Postives = 183/314 (58.28%), Query Frame = 3 Query: 159 VRGGXXXXXAERETD---AASDKDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGARSQ-GRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRN------------RHKGRTFLVADSAPMTRQEICSAALMHPLYGERTMPRFAEE----EAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYVQAKAQE 1040
VRGG T + + DL +VGAGYLG +IG++W P A++YGETRS +H+ G+T +R R + G + N VFCA P GN DY EV +VWDGTG FVFTSSG VY E GG+V EDSP+ ++ ++ L AE L GGCVVRLAGLYS ERGPH+ WL + + G +NL++Y+DAA A+VAAL+ KG+ FL AD +P TR+ IC AL HP+Y R+MP+F ++ E V G K YD+S TR LGWEP + SFE Y + + QE
Sbjct: 54 VRGGARSVGHASNTGTVMSGGENDLYVVGAGYLGKIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYAEKDGGVVTEDSPIDEAKVSSPLRIAELVTLDGGGCVVRLAGLYSAERGPHSVWLKEKRLNHHSQGKINLVSYKDAASAVVAALQAGINQIKDVDGAPEVKGKVFLAADHSPTTRRNICKVALEHPIYFRRSMPKFTQDATPPEFAVTG-------ARKVYDSSATRRVLGWEPEFKSFEEYFRIELQE 360
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: D7FTF3_ECTSI (Contains domains for prephenate dehydrogenase and nucleoside-diphosphate-sugar epimerases n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF3_ECTSI) HSP 1 Score: 243 bits (620), Expect = 9.960e-70 Identity = 135/296 (45.61%), Postives = 178/296 (60.14%), Query Frame = 3 Query: 204 AASDKDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGARSQ-GRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALR---NRHK---------GRTFLVADSAPMTRQEICSAALMHPLYGERTMPRFAEE----EAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYVQAKAQE 1040
+ + DL +VGAGYLG +IG++W P A++YGETRS +H+ G+T +R R + G + N VFCA P GN DY EV +VWDGTG FVFTSSG VY E GG+V EDSP+ ++ + L AE L GGCVVRLAGLYS ERGPH+ WL + G +NL++Y+DAA A+VAAL+ N+ K G+ FL AD +P TR++IC AL HP+Y R+MP+F ++ E V G K YD+S TR LGWEP + S E Y + + +E
Sbjct: 2 SGGENDLYVVGAGYLGKIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPIDEAKVNSPLRIAELVTLDGGGCVVRLAGLYSAERGPHSVWLKEKR------GKINLVSYKDAASAVVAALQAGINQIKDVDGAPGVKGKVFLAADHSPTTRRKICKVALEHPIYFRRSMPKFTQDATPPEFAVTG-------ARKVYDSSATRRVLGWEPEFPSIEEYFRIELEE 284
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A6V1QQS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QQS9_HETAK) HSP 1 Score: 237 bits (605), Expect = 2.180e-67 Identity = 123/272 (45.22%), Postives = 172/272 (63.24%), Query Frame = 3 Query: 219 DLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGARSQG--RRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRHKGRTFLVADSAPMTRQEICSAALMHPLYGERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYVQA 1028
D+ IVGAGYLG L+ ++W+ +P + VY ETR++AKH L G+ P LR R + + VFCAAP GNDDY E+ TA +W G G FVFTSSGG++ E GGIV DSP ++ P+AAKLV AES L AGG VVRL+GLY + RG HN+WL +E+ S+P G +NL+ YEDAA +++A+ + ++ +D P+TR+EIC AAL++ Y + P+F + + G K YD + T L W PRY+SF+ Y+++
Sbjct: 59 DILIVGAGYLGQLVAKEWQLKYPGSTVYAETRTDAKHSNLKDMGVVPLLRSERENHPFKEWKTVVFCAAPKGNDDYPGELK-TAISLWTGDGHFVFTSSGGIFAEEAGGIVTSDSPTAEGPRAAKLVEAESHVLKAGGTVVRLSGLYDVTRGAHNYWLGLEELDSNPDGIINLIHYEDAALLVISAIEKGRGAKIYIGSDGVPITRKEICDAALLNDAYKGKKTPKFLKPSSKNDG---------KIYDMTETFSELSWVPRYASFQEYMKS 320
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: L1JYJ7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYJ7_GUITC) HSP 1 Score: 228 bits (581), Expect = 9.510e-65 Identity = 125/270 (46.30%), Postives = 167/270 (61.85%), Query Frame = 3 Query: 216 KDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGARSQGRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRH--KGRTFLVADSAPMTRQEICSAALMHPLYGERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAY 1019
+DL +VGAG LG+L+ QQ ++ FP ARV ETR++AKH+ L + G +++ +FAN VFCAAP GND+Y AEV A +W G G FVFTSSGGVY E+ GG VNE SPV+ S + KL+ AE GG V+RLAGLY+LERG HN+WL+ +V P G + L++YEDAA A + L + KG F++ D TRQ+IC +AL +Y ++ +P F E +G KRYD S LGW+PRY SF+ +
Sbjct: 5 RDLLVVGAGTLGSLLIQQHKEKFPEARVVAETRTDAKHEALKSLGAEARTV-SQAGDEKFANVVFCAAPGGNDNYAAEVD-RALNMWSGAGKFVFTSSGGVYAESSGGTVNEQSPVASSARTQKLIDAEKCTTERGGSVLRLAGLYTLERGAHNYWLNAGKVDGRPDGLIGLVSYEDAAAAALTVLSSEKSVKGEVFVICDGKEQTRQDICESALKTAMYRDKKLPVFTTTEGPIG----------KRYDISKAL-ELGWKPRYPSFDEF 261
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: W7U605_9STRA (Rossmann-fold nad-binding domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U605_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.310e-63 Identity = 129/296 (43.58%), Postives = 180/296 (60.81%), Query Frame = 3 Query: 204 AASDKDLCIVGAGYLGTLIGQQWRDAFPT-ARVYGETRSEAKHDVLAATGITPTLRGAR-----SQGRR-FANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRHK------GRTFLVADSAPMTRQEICSAALMHPLY-GERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALG-WEPRYSSFEAYVQAKAQEQS 1046
+ +KDL +VG G LG +GQ WR++F A +YGET ++ +HD L + G+ P +R R QG F++ VFC PS N DY EV A ++W G G FVFTSSGGVY E GG VNE + +S +P+ +K++ AE A + GG V+RLAGLY+ RGPH FWLSK EV ++ G +NLL YEDAA A +AAL + H+ GR L++D+ P+TR++IC AA+ P + G+ MP F P+ + K YDTS +R ALG W P+Y SF ++ + ++
Sbjct: 83 STQEKDLLVVGMGTLGRFLGQSWRESFGNDAIIYGETSTDNRHDDLRSIGVKPFMRSERVGTLAEQGHEAFSHVVFCVPPSKNQDYVEEVK-EALKLWTGKGGFVFTSSGGVYAEDEGGTVNESAALSPNPRMSKILAAEEAVIAGGGTVLRLAGLYTQTRGPHTFWLSKGEVGATEEGLINLLHYEDAARATMAALLHHHEKADQNFGRVLLISDNQPLTRKQICEAAVQSPFFRGKYEMPIFKRPSD-------TPRSLGKVYDTSASRAALGGWTPKYPSFAVFMASSRPSEA 370
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A7S1N238_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N238_9EUGL) HSP 1 Score: 230 bits (586), Expect = 4.380e-63 Identity = 127/268 (47.39%), Postives = 168/268 (62.69%), Query Frame = 3 Query: 219 DLCIVGAGYLGTLIGQQWRDAFPT-ARVYGETRSEAKHDVLAATGITPTLRGARSQGRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDS-PKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRHKGRT-FLVADSAPMTRQEICSAALMHPLYGERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFE 1013
+L +VG G LG LI Q+W++ + ARV GETRS+A H L A GI P ++G + R ++N VFCA P+GNDDY E A++ W+G G FVFTSS GVY E GG+VNE+SPV+D P+ AK+V E CL AGG V+RLAGLY+ ERGPH +WL +V P G +N++AYEDAA V+ L + G+ FLV D P+TR++IC +A ++ MP F+ G G P KRYD S + W+PRYSSF+
Sbjct: 187 ELLVVGCGVLGRLIAQKWKEVHGSNARVVGETRSDASHAELLALGIEPQIKGEGGE-RTYSNVVFCAPPTGNDDYPQECIDAAKK-WNGKGGFVFTSSAGVYSEDSGGVVNEESPVNDQVPRIAKMVSTEKECLKAGGTVLRLAGLYTAERGPHTYWLKVGQVKGRPDGLINMIAYEDAASCAVSVLGTKGVGQEIFLVGDGVPITREDICKSARKLNSLADKPMPSFSP------GDGPSPDAG-KRYDCSKLHRMVDWQPRYSSFD 445
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A4D9D5S6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5S6_9STRA) HSP 1 Score: 222 bits (565), Expect = 4.300e-62 Identity = 126/282 (44.68%), Postives = 173/282 (61.35%), Query Frame = 3 Query: 222 LCIVGAGYLGTLIGQQWRDAFPT-ARVYGETRSEAKHDVLAATGITPTLRGARS-----QGRR-FANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALRNRHK------GRTFLVADSAPMTRQEICSAALMHPLY-GERTMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALG-WEPRYSSFEAYV 1022
+ +VG G LG +GQ WR++F A +YGET ++ +HD L + G+ P +R R+ QG F++ VFC PS N DY EV A ++W G G FVFTSSGGVY E GG VNE + +S +P+ +K++ AE A + GG V+RLAGLY+ RGPH FWLSK EV ++ G +NLL YEDAA A +AAL + H+ GR L++D+ P+TR++IC AA+ P + G MP F P+ + K YDTS +R ALG W P+Y SF ++
Sbjct: 1 MLVVGMGTLGRFLGQSWRESFGNDAIIYGETSTDNRHDDLRSIGVKPFMRSERAGTLAEQGHEAFSHVVFCVPPSKNQDYVEEVK-EALKLWTGKGGFVFTSSGGVYAEDEGGTVNESAALSPNPRMSKILAAEEAVIAGGGTVLRLAGLYTQTRGPHTFWLSKGEVGATEEGLINLLHYEDAARATMAALLHHHEKADQNFGRVLLISDNQPLTRKQICEAAVQSPFFRGRYEMPIFKRPSD-------TPRSLGKVYDTSASRAALGGWTPKYPSFAVFM 274
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A7S2U1J7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1J7_9EUKA) HSP 1 Score: 219 bits (559), Expect = 1.720e-61 Identity = 123/284 (43.31%), Postives = 169/284 (59.51%), Query Frame = 3 Query: 207 ASDKDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTLRGA--RSQGRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSDSPKAAK---LVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALR--NRHKGRTFLVADSAPMTRQEICSAALMHPLYGER-TMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYVQAKA 1034
A+ KDL ++G G LG + +QW++ P V GET+ +H GITP L + G +F VF A PS + DY ++ A +WD +G VFTSSGG Y E GGIV E+SP D K+A+ L +E L A G V+RLAGLY+L+RG H++WL++ +V+ SP G +NL+ Y+DAAG +VAAL ++ KG+ FL +D P+TRQEIC AA+ HP YG R MP F + G KRYD S TR L W+P+Y SF ++ A++
Sbjct: 4 AAGKDLLVIGCGTLGERVARQWKETNPDNLVVGETKGNTRHASFREHGITPRLLDSDEAKSGEKFPYVVFSAPPSSSSDYVEDLE-RAISLWDKSGVLVFTSSGGAYSEEDGGIVTENSPTKDPSKSARAKVLHDSEQTVLKADGTVLRLAGLYTLQRGAHSYWLNRKQVSGSPEGLINLIHYDDAAGLVVAALAAGDKAKGQIFLGSDDQPVTRQEICEAAIRHPFYGARFQMPTFTAQFGPKG----------KRYDNSATRDTLEWQPKYPSFSKFMAAES 276
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Match: A0A7S0D235_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D235_9EUKA) HSP 1 Score: 222 bits (565), Expect = 3.730e-61 Identity = 120/282 (42.55%), Postives = 172/282 (60.99%), Query Frame = 3 Query: 204 AASDKDLCIVGAGYLGTLIGQQWRDAFPTARVYGETRSEAKHDVLAATGITPTL---RGARSQGRRFANAVFCAAPSGNDDYEAEVAATAREVWDGTGTFVFTSSGGVYKEAGGGIVNEDSPVSD---SPKAAKLVGAESACLGAGGCVVRLAGLYSLERGPHNFWLSKDEVASSPHGTVNLLAYEDAAGAIVAALR--NRHKGRTFLVADSAPMTRQEICSAALMHPLYGER-TMPRFAEEEAGVGGGGARPQVVTKRYDTSVTRGALGWEPRYSSFEAYV 1022
+ +KD+ ++G G LG + + W+ ++P A+V GET+ +++H GITP L + A S +F VF A PS + DY V A ++WD G VFTSSGG Y E GG+V EDSP D SP+ L+ +E+ + AGGCVVRLAGLY+L+RG H++WL + +V+ SP G +NL+ Y+DAA +VAAL+ + KG+ FL D P++RQEIC AA+ HP Y + MP F +G KRYD ++TR LGW P+Y SF++++
Sbjct: 94 SGGEKDILVIGCGTLGERVARAWKTSYPDAKVVGETKGDSRHTSFQQHGITPRLADSKEALSGEEKFPYVVFSAPPSASSDYVGAVK-RAVDLWDKNGMIVFTSSGGSYLEEDGGVVVEDSPTKDPASSPRVKMLLDSENEIVKAGGCVVRLAGLYTLQRGAHSYWLQRGQVSGSPEGLINLIHYDDAADLVVAALKAGSASKGQVFLGVDDRPISRQEICEAAMRHPSYEAKFQMPTFTGMTGSLG----------KRYDNTMTRQTLGWIPKYPSFDSFI 364 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig100.1673.1 >prot_S-ischiensis_contig100.1673.1 ID=prot_S-ischiensis_contig100.1673.1|Name=mRNA_S-ischiensis_contig100.1673.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=349bp MMRGYATLVGLATVAVSQVRYQPVAAWAPGGRAPDGSGMASIRHGKQCQVback to top mRNA from alignment at S-ischiensis_contig100:106817..117123+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig100.1673.1 ID=mRNA_S-ischiensis_contig100.1673.1|Name=mRNA_S-ischiensis_contig100.1673.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10307bp|location=Sequence derived from alignment at S-ischiensis_contig100:106817..117123+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig100:106817..117123+ >mRNA_S-ischiensis_contig100.1673.1 ID=mRNA_S-ischiensis_contig100.1673.1|Name=mRNA_S-ischiensis_contig100.1673.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2094bp|location=Sequence derived from alignment at S-ischiensis_contig100:106817..117123+ (Schizocladia ischiensis KU_0333)back to top |