mRNA_S-ischiensis_contig100.1666.1 (mRNA) Schizocladia ischiensis KU_0333
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A8J5SNI2_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SNI2_ZIZPA) HSP 1 Score: 145 bits (365), Expect = 4.140e-36 Identity = 88/225 (39.11%), Postives = 111/225 (49.33%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHS-VTAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH R GH AL +LA E G+ G D C C A K RR P P A+ + +RLELV DL GP S T G Y + D +R V + K + A+ + G +K LRTD E A FA C G+H +H+APYS QQNG ER G +V ARSML A GLP WGEA++ A Y+ NR P + + +P + W G P Sbjct: 342 WHERFGHVNMAALRKLAREELVRGLPELGQVDQL-CEACQAGKQRRTPFP--AQAEYRAQRRLELVHGDLCGPISPATPRGNKYFLLMVDDLSRYMWVAAIPSKDRAAAAIKEVLVRAEGESGVKLKVLRTDRGGEFTASEFAEYCAAKGVHRQHTAPYSPQQNGVVERRNGTVVSTARSMLKAKGLPGWFWGEAMSTAVYVLNRCPTKSVDGMTPFEAWHGRKP 563
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A182H1P5_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H1P5_AEDAL) HSP 1 Score: 135 bits (341), Expect = 1.610e-34 Identity = 85/221 (38.46%), Postives = 115/221 (52.04%), Query Frame = 1 Query: 13 LGHPGREALERLA-AEPGSGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSVTA-GGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 +GH +L+RL G K + D C +CL K RLP P +D LELV DL GP V + GG Y F D A++ V LERKSQV+EA R+ + G+ +K LRTD E F + E+ GI + S PY+ +QNG AER LV +AR ML + L +E W EA++ A Y+ NR P R L +++P + W+G P Sbjct: 1 MGHLNEASLKRLKQVANGIDFKNEALAD---CVSCLEGKQARLPFPT---SDSRTTDLLELVHSDLCGPVEVPSFGGSRYFVTFVDDASKKVVVFFLERKSQVLEAFQRFKASAERQSGQKLKILRTDNGTEYVNKGFRQVLEREGIRHQTSCPYTPEQNGVAERMNRTLVEKARCMLNDAKLGKEFWAEAVSTAAYLVNRCPTRSLEYKTPEEAWTGKKP 215
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A0J7K7B7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7B7_LASNI) HSP 1 Score: 139 bits (350), Expect = 1.040e-33 Identity = 82/224 (36.61%), Postives = 118/224 (52.68%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEPGSGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSV-TAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WHR+ GH +EA+++L+ +G+ ++ A C C+ K RLP P+ + + L+L+ D+ GP V T GG YA D +R HV++LE KS AL +YI V R K +R+D +E F E++GI ++ +APYS QQNG AER L+ R ML + LP WGEAI+ A Y+ NRLP + +P + W G P Sbjct: 399 WHRKFGHRSQEAIQQLSQGLATGITIKDCGIRATCECCIKGKMSRLPFPKSSESK--SKAPLDLLHTDVCGPMQVKTPGGKRYALTVIDDYSRFTHVYLLETKSSTKIALRKYIDLVSNKFNRKPKVIRSDRGREYIDKVFTEQLEKDGIQVQLTAPYSPQQNGVAERKNRSLMNMVRCMLDDAKLPDTYWGEAISTANYLQNRLPTKATS-NTPYELWEGTTP 619
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A7I8K9S9_SPIIN (Hypothetical protein n=7 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K9S9_SPIIN) HSP 1 Score: 134 bits (337), Expect = 4.750e-32 Identity = 85/225 (37.78%), Postives = 110/225 (48.89%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSV-TAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH RLGH AL ++A E G+ G D C CLA K +R P P++ + + LELV DL GP + T G Y + D +R V +L K + A+ G + LRTD E + FA GIH +H+APYS QQNG ER G +V ARSML A GLP WGEA+ A YI NR P++ + +P + W G P Sbjct: 489 WHARLGHVNMTALRKMAREELVRGLPAVGPVDQL-CEACLAGKQKRSPFPQQG--EYRARRGLELVHSDLCGPIAPETPNGSKYFLLLVDDRSRYMWVAMLPSKDRAAVAIKEIKARAEGESGLKLGALRTDRGGEFTSHEFAEYYAGEGIHHQHTAPYSPQQNGIVERRNGTVVATARSMLKAKGLPGWFWGEAVATAVYILNRCPMKSVDGMTPFEVWHGKKP 710
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A0P6IXK4_AEDAE (Putative copia-3 dwil-i (Fragment) n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A0P6IXK4_AEDAE) HSP 1 Score: 134 bits (337), Expect = 5.610e-32 Identity = 80/225 (35.56%), Postives = 118/225 (52.44%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSV-TAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WHRRLGH E + ++ + G+G+ + + CGTC K RLP P+ +D L+L+ DL G V T G Y D +R +++ ERKSQ E + +++ G+ K LRTDG E ++ +F + GI L+ +APYS QQNG+AER L+ R +L + + + WGEAI A Y+ NRLP G ++P + WSG +P Sbjct: 405 WHRRLGHRHPEDVTKIVRDGLGTGLDMTDCGIRSVCGTCCEGKLSRLPFPK---SDTKSKAVLDLIHSDLCGQMEVVTPSGNRYVLTLIDDFSRYCVIYLQERKSQAEEKIREFVKLAQTQFGKTPKVLRTDGGGEFSSESFKLFLRKEGILLQQTAPYSPQQNGKAERMNRSLIEMTRCLLRDADMDKRYWGEAINTANYLLNRLPCSATG-KTPFELWSGKLP 625
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: B8BH06_ORYSI (Integrase catalytic domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BH06_ORYSI) HSP 1 Score: 130 bits (327), Expect = 1.160e-30 Identity = 86/227 (37.89%), Postives = 111/227 (48.90%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRRA--RTDPAKLQRLELVGVDLSGPHS-VTAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH RLGH L ++ E G+ D C CLA K RR P PR+A R+D + L L+ DL GP + T G Y + D +R V +L K A+ R GR ++ LRTD E + FA C + G+ E +APYS QQNG ER +VG ARSML A GLP WGEAI A Y+ NR + +G ++P W+G P Sbjct: 151 WHARLGHINFRVLCKMGKEELVRGLPCLSQVDQV-CEACLAGKHRRSPFPRQALCRSD----EPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRIQAAAERKSGRKLRALRTDRGGEFTSTQFAEYCAELGMRRELTAPYSPQQNGVVERRNQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIGGKTPYALWNGVPP 372
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: Q7FAB9_ORYSJ (OSJNBa0033H08.2 protein n=8 Tax=Oryza sativa TaxID=4530 RepID=Q7FAB9_ORYSJ) HSP 1 Score: 130 bits (327), Expect = 1.230e-30 Identity = 87/227 (38.33%), Postives = 111/227 (48.90%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRRA--RTDPAKLQRLELVGVDLSGPHS-VTAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH RLGH AL ++ E G+ D C CLA K RR P PR+A R+D L L+ DL GP + T G Y + D +R V +L K A+ R GR ++ LRTD E + FA C + G+ E +APYS QQNG ER +VG ARSML A GLP WGEAI A Y+ NR + +G ++P W+G P Sbjct: 552 WHARLGHINFRALCKMGKEELVRGLPCLSQVDQV-CEACLAGKHRRSPFPRQALCRSDVP----LALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRTQAAAERKSGRKLRALRTDRGGEFTSTQFAEYCAELGMRRELTAPYSPQQNGVVERRNQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIGGKTPYALWNGVPP 773
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A8H8P938_9AGAM (Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8P938_9AGAM) HSP 1 Score: 128 bits (322), Expect = 5.920e-30 Identity = 87/229 (37.99%), Postives = 114/229 (49.78%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEPGSGMKVQGTFDPA------RCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSVTAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WHRR GH G L +LA SG V+G PA C C AK+ R P P +D LELV DL GP + GG Y I D ATR R V L+ K EA + + V GR +K LR++ E + ++ +G+ + SAPYS QQNGRAER + L R+M++ +GLPQ W E +T A YI NR P + +P + W+G P Sbjct: 1225 WHRRFGHLGSANLSKLA----SGSLVKGL--PASLACITECNECALAKACRSPFPP---SDSIATAPLELVHSDLCGPFPHSVGGSKYWMILLDDATRYRWVLPLKSKYDAFEAFKAWHKRVTTQTGRVLKVLRSNNGGEYFSAQWSDYVADHGLVRQTSAPYSSQQNGRAERDLWSLQDWVRAMMLDAGLPQGWWAETVTTAVYIMNRSPHSAIDV-TPFEAWTGVCP 1443
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9) HSP 1 Score: 128 bits (321), Expect = 7.670e-30 Identity = 80/225 (35.56%), Postives = 111/225 (49.33%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEPG-SGMKVQGTFDPARCGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSV-TAGGGLYAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH R GH +AL +LA + GM + D C +CL K RR P P A RL+LV DL GP + T GG Y + D +R + +L RK + A+ R+ V + ++ LRTD E + F C G+ + +APYS QQNG ER +VG AR +L A G+P E WGEA+T A ++ N P + + +P + W G P Sbjct: 500 WHARYGHLNFDALRKLAQDGMVPGMPLVEHADQV-CDSCLVGKQRRAPFPTEANYRVG--DRLDLVHGDLCGPITPPTHGGKRYFLLLVDDKSRYMWIVLLSRKDEAPAAIKRWQAGVEVETSVKLRALRTDRGGEFTSTEFGEYCADRGVRRQLTAPYSPQQNGVVERRNQTVVGTARCLLKAKGVPNEFWGEAVTTAVHLLNCAPTKAVRGMTPYEAWHGDKP 721
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Match: A0A4C1WX63_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WX63_EUMVA) HSP 1 Score: 127 bits (318), Expect = 1.750e-29 Identity = 79/226 (34.96%), Postives = 116/226 (51.33%), Query Frame = 1 Query: 1 WHRRLGHPGREALERLAAEPG-SGMKVQGTFDPAR-CGTCLAAKSRRLPHPRRARTDPAKLQRLELVGVDLSGPHSVTAGGGL-YAAIFYDYATRMRHVHILERKSQVVEALDRYIRTVGLPEGRHIKCLRTDGAQELAAGAFAALCEQNGIHLEHSAPYSQQQNGRAERSVGILVGRARSMLVASGLPQELWGEAITAATYITNRLPVRDLGWRSPLQCWSGAVP 669 WH RLGH + ++ + A G+K+ + + C C K R P + R + LQ +L+ D+ GP S T+ G+ Y +F D AT RHV+ ++ KS V+E +Y V +I+ L TD +E F ++ GI E +APY+ +QNGRAER + +V ARSML A LP +LW EA+ A YI NR ++P + W+G P Sbjct: 254 WHERLGHINLKEIKSMCANNVVEGLKINEVDEKSFVCEACAYGKQCRFPFRKSVRGE--GLQPGDLIYSDVCGPMSHTSVQGMRYFVLFKDAATSHRHVYFIKNKSDVLEVFKKYNCIVKNKYMHNIRILHTDNGREYVNKVFKEYLDKEGIVHELTAPYTPEQNGRAEREIRTIVESARSMLYARDLPLDLWAEAVNCAVYILNRTSSSQTPGKTPYELWNGTKP 477 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig100.1666.1 >prot_S-ischiensis_contig100.1666.1 ID=prot_S-ischiensis_contig100.1666.1|Name=mRNA_S-ischiensis_contig100.1666.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=260bp WHRRLGHPGREALERLAAEPGSGMKVQGTFDPARCGTCLAAKSRRLPHPRback to top mRNA from alignment at S-ischiensis_contig100:2914..3695- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig100.1666.1 ID=mRNA_S-ischiensis_contig100.1666.1|Name=mRNA_S-ischiensis_contig100.1666.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=782bp|location=Sequence derived from alignment at S-ischiensis_contig100:2914..3695- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig100:2914..3695- >mRNA_S-ischiensis_contig100.1666.1 ID=mRNA_S-ischiensis_contig100.1666.1|Name=mRNA_S-ischiensis_contig100.1666.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1560bp|location=Sequence derived from alignment at S-ischiensis_contig100:2914..3695- (Schizocladia ischiensis KU_0333)back to top |