mRNA_S-ischiensis_contig10.1660.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: D8LLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV0_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 9.040e-21 Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 2
Query: 5 SLRGKGPPVTSMCVSKGIVAASYSTGHLRIFSV---LTRE--------LSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPG-RGQVGLLASSTIPNQLLTGVAFVPDGTGQILATA 358
+LRG P+T + + G + ++S+ L RE L++E+AAHSRTINA+ L P +SM++A+VGED FLNVWELP G GQVGL+A+S + N+LLTGV F+ DG+ +I+ A
Sbjct: 133 TLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTLAIEIAAHSRTINAMDLHP--SSMLLATVGEDLFLNVWELPKCGQEGPSGQVGLVATSRVDNRLLTGVQFLVDGSHRIIGLA 260
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: A0A2R5GPT9_9STRA (WD repeat-containing protein 54 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPT9_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 5.300e-15 Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 2
Query: 2 CSLRGKGPPVTSMCVSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFVPDGTGQILATA 358
C G P S+ + G++ A++ TG +R++S+ L +EV AH R +N++A+ P N+ A+ GED F+NVWELP + L++S ++ L GV+F D + ++ ATA
Sbjct: 200 CRFPSMGAPCCSVEIRAGMIIAAFVTGVVRVYSITHSHLQIEVDAHCRALNSMAMHPSANAF--ATCGEDGFVNVWELPSKQCD---DLRLVSSDHFKDRFLVGVSFFKDNSNKLAATA 313
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: A0A7S2FDR9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDR9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 6.630e-15 Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 2
Query: 14 GKGPPVTSMCVSKGIVA--ASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFVPDGTGQILATA 358
G+G P T + + A A ++ G LRI + TRE++VEVAAHSR I A+ + P + +V ED ++ VW LPD +V L+ + ++ LTGV F DG+ +ILA A
Sbjct: 107 GEGLPCTCLGMHNDADALVAGFAHGVLRIVQLSTREVTVEVAAHSRCIMALDVHP--TQPIFTTVSEDTYMKVWALPDSEDKSASEVALIYEERVEDRFLTGVQFTRDGSERILAAA 221
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: A0A5D6YIF9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIF9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.620e-13 Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 2
Query: 20 GPPVTSM--CVSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAI-ALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAF 322
G P+T+M + K +V Y TG LR+++ T +L EVAAHSR I A+ AL+ + VASVGED FLN+WEL G V L +S +PN LL GVAF
Sbjct: 210 GYPITAMRFVLDKWLVCG-YLTGALRVYAADTLQLHAEVAAHSRAITALDALEGY-----VASVGEDTFLNIWEL------AGGHVRLASSHAVPNDLLAGVAF 301
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: UPI000719EA49 (WD repeat-containing protein 54-like isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719EA49) HSP 1 Score: 72.0 bits (175), Expect = 1.870e-12 Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query: 14 GKGPPVTSMCVSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFV-PDGTGQILATAC 361
G G P + + + ++ A+Y +GH+R+F V++ + EV AH+R INAI + N MV+ +V ED F +W+L + AP ++ L+S + N LL G AF PDGT T C
Sbjct: 206 GLGSPCSGVRLWNELLVATYGSGHIRLFKVISGHMCAEVTAHARWINAIDVV-HRNGMVL-TVSEDSFAKIWQLKEGDAP---EIEHLSSECVQNVLLCGAAFTHPDGTS-FCVTGC 316
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: A0A3R7J403_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J403_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.880e-12 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 2
Query: 26 PVTSMC-VSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRG-QVGLLASSTIPNQLLTGVAFV 325
P T M +++ + + TG LR+FS L EVAAH+R I A+ ++ VASV ED FLN+WE+ S PG G +V L +S +PN LLTGVAFV
Sbjct: 489 PATCMTFMAENWLVVGFLTGCLRLFSPEDFHLHAEVAAHTRAITALD----AHNEYVASVSEDTFLNIWEISS-SKPGSGPRVKLASSQAVPNDLLTGVAFV 585
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: D0P2Q9_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0P2Q9_PHYIT) HSP 1 Score: 70.1 bits (170), Expect = 8.890e-12 Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query: 26 PVTSMC-VSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFVPDGTGQILATA 358
P TSM +++ + A Y TG LR+++ L EVAAH+R I A+ ++ SV ED F+NVWE+ +V L++S +PN LLTGVAFV T +L A
Sbjct: 202 PATSMTFMAENWLVAGYLTGCLRLYNPQGFALHAEVAAHTRAITALD----AHNEFAVSVSEDTFMNVWEISSSKPGATPRVKLVSSQPVPNDLLTGVAFV--STNSLLTAA 307
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: W2GJT0_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2GJT0_PHYPR) HSP 1 Score: 70.1 bits (170), Expect = 9.210e-12 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 2
Query: 20 GPPVTSMC-VSKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFVPDGTGQILATA 358
G P TSM +++ + A + TG LR+++ L EVAAH+R I A+ ++ V SV +D F+N+WE+ +V L++S +PN LLTGVAFV T +L A
Sbjct: 206 GYPATSMTFMAENWLVAGFLTGCLRLYNPENFHLHAEVAAHTRAITALD----AHNEFVVSVSDDTFMNIWEISSTKPGAAPRVKLVSSQPVPNDLLTGVAFV--STNSLLTAA 313
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: A0A2D4BSA3_PYTIN (Dynein light chain 2B putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSA3_PYTIN) HSP 1 Score: 65.5 bits (158), Expect = 4.270e-10 Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 2
Query: 26 PVTSMCVS-KGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFV 325
P TS+ + G + Y TG LR+F + E+AAHSR + AI + + +V SVGED F+NVWEL R Q L++S + N LLTGV FV
Sbjct: 210 PATSLRFTPSGTLLGGYLTGLLRVFRSTDFHVHAEIAAHSRAVTAIDV----SDDLVVSVGEDTFMNVWELSGKKEAPRIQ--LVSSHCVSNDLLTGVVFV 304
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Match: UPI00193A6DD0 (WD repeat-containing protein 54-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6DD0) HSP 1 Score: 62.4 bits (150), Expect = 5.670e-9 Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 2
Query: 5 SLRGKGPPVTSMCV-SKGIVAASYSTGHLRIFSVLTRELSVEVAAHSRTINAIALQPFGNSMVVASVGEDCFLNVWELPDFSAPGRGQVGLLASSTIPNQLLTGVAFVPDGTGQILA 352
S+ G P T++C+ + G++AASY TGH+RIF T+E+ E+ AH I+++ + ++ S GED +L VW++ S + ++ + + + L+ GV F P GT ++ A
Sbjct: 213 SITGSRYPCTALCLLNDGLLAASYYTGHIRIFDAPTQEMLAEITAHVAPISSMDCYNARDHSLLLSGGEDTYLRVWKI---SKTDKLKISQEWYTYVEDLLICGVKFHP-GTDEMCA 325 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1660.1 >prot_S-ischiensis_contig10.1660.1 ID=prot_S-ischiensis_contig10.1660.1|Name=mRNA_S-ischiensis_contig10.1660.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp VLLARERAARDLHVREQRHRGGQLFHGAPAHLLRPHPGALRRGCRAQPHHback to top mRNA from alignment at S-ischiensis_contig10:3553846..3557093- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1660.1 ID=mRNA_S-ischiensis_contig10.1660.1|Name=mRNA_S-ischiensis_contig10.1660.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3248bp|location=Sequence derived from alignment at S-ischiensis_contig10:3553846..3557093- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:3553846..3557093- >mRNA_S-ischiensis_contig10.1660.1 ID=mRNA_S-ischiensis_contig10.1660.1|Name=mRNA_S-ischiensis_contig10.1660.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig10:3553846..3557093- (Schizocladia ischiensis KU_0333)back to top |