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Homology
BLAST of mRNA_S-ischiensis_contig10.1639.1 vs. uniprot
Match: H6QDB4_PYROT (FHA domain protein n=3 Tax=Pyrobaculum TaxID=2276 RepID=H6QDB4_PYROT) HSP 1 Score: 50.4 bits (119), Expect = 2.910e-5 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 34 PTVRLSVVVEKSPGLA-PGTRFEMPV---GADLTVGRSANACQVVIRKDDMVSKKHLRVVVVSSGLLLSDLGSKHGSV-----AERPVRV 276
P V +SV V +SP + G +FE + GA +TVGR+ + QVVI D VS++HLR++V S+G+++ DLGS +G+ +ER VR
Sbjct: 67 PYVVVSVEVLESPVESLVGKKFEFKIEATGAIVTVGRAVDN-QVVI-PDPTVSRRHLRLIVTSNGIVVEDLGSSNGTFLLEGGSERRVRA 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 326 |
| Cds size | 324 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815542.400969-CDS-S-ischiensis_contig10:3349506..3349656 | 1622815542.400969-CDS-S-ischiensis_contig10:3349506..3349656 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 3349507..3349656 - |
| 1695739758.6101656-CDS-S-ischiensis_contig10:3349506..3349656 | 1695739758.6101656-CDS-S-ischiensis_contig10:3349506..3349656 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 3349507..3349656 - |
| 1622815542.4153547-CDS-S-ischiensis_contig10:3350853..3351027 | 1622815542.4153547-CDS-S-ischiensis_contig10:3350853..3351027 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 3350854..3351027 - |
| 1695739758.6184733-CDS-S-ischiensis_contig10:3350853..3351027 | 1695739758.6184733-CDS-S-ischiensis_contig10:3350853..3351027 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 3350854..3351027 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1639.1 >prot_S-ischiensis_contig10.1639.1 ID=prot_S-ischiensis_contig10.1639.1|Name=mRNA_S-ischiensis_contig10.1639.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
SGSHGGSRRSRPTVRLSVVVEKSPGLAPGTRFEMPVGADLTVGRSANACQ
VVIRKDDMVSKKHLRVVVVSSGLLLSDLGSKHGSVAERPVRVSAGPPPGP
PRGGGAPP back to topmRNA from alignment at S-ischiensis_contig10:3349507..3351027- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig10.1639.1 ID=mRNA_S-ischiensis_contig10.1639.1|Name=mRNA_S-ischiensis_contig10.1639.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1521bp|location=Sequence derived from alignment at S-ischiensis_contig10:3349507..3351027- (Schizocladia ischiensis KU_0333)
AGCGGCAGCCACGGCGGCTCGCGGCGCAGCCGGCCGACTGTGAGGCTGAG
TGTGGTGGTGGAGAAGAGTCCCGGGCTGGCGCCGGGGACGCGCTTCGAGA
TGCCTGTCGGGGCGGACCTGACGGTGGGGCGCAGCGCCAACGCGTGCCAG
GTTGTGATCCGGAAGGATGATATGGTGGGTGTTGGGTTGGGTGGGCCCAT
TTTGCCTCCAGGGGGAGGGGGGCGTTTTTGGGTGTGCCTTGTGTGGAAGA
GTTTGGAGCTTGACGGCGTGGTGTGTGATGTGGTGTGATGTGACGTGACG
TGTGCTCTGTCCATGCAGTACTATGTGAGCACCTACAGTTTTGACATGGC
ATCACGTCTGTGCCCGACGGGGTGGGCAGTTTGACATCCGCGCCGCATCG
CAGCATATCGCGGGATCCCGCGACACCTGGCGTGACCGGCCTGCGCTGCA
CATGGTGCTCCGCTTTTGCTTACAATAGCGGCCACCGTTTGCTTCGCTAC
ACTCGGGCAAAAGGATTCTCTCGAATTTGCTTGCTACTTGTCGTACACCG
GGCCGCCCGGTGCTGTGCTCGCCCAGAGAGATCATGGCCATTCTTGCGAC
ATCCCACGCGATATCACATATCGAGGAATGGCACGGCTGTGGGCGGCTGG
GGTGTGCCAGACGCCTGCTGGCTCGAGGGGGTTGTGGGGCTGGGGTCACG
GTAGGGTGGGCGGGGCAGGGATGGGACGGGCCGCTAGGGGCGTGGGGGGT
TGCTTTCCTTGGAGATATGTTGCCATTGAACACGCCATCCATGGCAGACG
CCGTGTATCCATGGGGCCGCGGCGCTGTTTTCCTCCGTGGTGTGGGTGGT
TGGGAGGGGGGGGAGGAGGGAGAGAACGAGCCCTTTCGGTTTATTTTTTC
CACCCCTTTTTACCTGCCTGCAAGGTGGCGCGCGAGGCTAGCAATGTGCG
CGGAGAGTCACAAGTTGTAAGAAGTATGGCACTGTTGCCGCGGCGCGCGG
ATGGGAAAAGCGTGCTGGGTTGGGTGCTGGTGGCTTTGGCGGCGGGGACG
GAAAGGGTATGGCGGGGGGGGGGGGGGATGAGTTACCACGACGGGCCCCT
TCTCGGTGGGGACGGCCAAGCACAGCGTCACTTCAAGACCAGAAAAAACA
AACAAGACGAAAAAAAACGCCCTCATTCAGAGGCCCTGCGACGCGCGAGG
GCCGCGCCGATTTGACAGAACACGTTTTGGGACGCTTTTTCCGACATTCG
CGCTCCGGGCACCTCGTGTTTAAGAAACAACAACAGCAAATAAAAAACAC
TGCACGACACACTCGCGACAATGCCCCCACGGGCGCCTGCCTGCCCTGTC
CATGACCCCCCCCCCCAACAGGTGAGCAAGAAACACCTCCGCGTCGTGGT
GGTCTCCTCGGGCCTGCTCCTCAGCGACCTCGGCAGCAAGCACGGCTCGG
TCGCCGAACGGCCCGTCCGCGTGTCCGCTGGCCCCCCGCCTGGGCCGCCG
CGGGGCGGGGGGGCGCCCCCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig10:3349507..3351027- >mRNA_S-ischiensis_contig10.1639.1 ID=mRNA_S-ischiensis_contig10.1639.1|Name=mRNA_S-ischiensis_contig10.1639.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig10:3349507..3351027- (Schizocladia ischiensis KU_0333)
AGCGGCAGCCACGGCGGCTCGCGGCGCAGCCGGCCGACTGTGAGGCTGAG
TGTGGTGGTGGAGAAGAGTCCCGGGCTGGCGCCGGGGACGCGCTTCGAGA
TGCCTGTCGGGGCGGACCTGACGGTGGGGCGCAGCGCCAACGCGTGCCAG
GTTGTGATCCGGAAGGATGATATGAGCGGCAGCCACGGCGGCTCGCGGCG
CAGCCGGCCGACTGTGAGGCTGAGTGTGGTGGTGGAGAAGAGTCCCGGGC
TGGCGCCGGGGACGCGCTTCGAGATGCCTGTCGGGGCGGACCTGACGGTG
GGGCGCAGCGCCAACGCGTGCCAGGTTGTGATCCGGAAGGATGATATGGT
GAGCAAGAAACACCTCCGCGTCGTGGTGGTCTCCTCGGGCCTGCTCCTCA
GCGACCTCGGCAGCAAGCACGGCTCGGTCGCCGAACGGCCCGTCCGCGTG
TCCGCTGGCCCCCCGCCTGGGCCGCCGCGGGGCGGGGGGGCGCCCCCCGT
GAGCAAGAAACACCTCCGCGTCGTGGTGGTCTCCTCGGGCCTGCTCCTCA
GCGACCTCGGCAGCAAGCACGGCTCGGTCGCCGAACGGCCCGTCCGCGTG
TCCGCTGGCCCCCCGCCTGGGCCGCCGCGGGGCGGGGGGGCGCCCCCC back to top
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