mRNA_S-ischiensis_contig10.1635.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1635.1
Unique NamemRNA_S-ischiensis_contig10.1635.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3312539..3313257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size719
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1635.1prot_S-ischiensis_contig10.1635.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3312558..3312959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.1782124-UTR-S-ischiensis_contig10:3312538..33125571622815506.1782124-UTR-S-ischiensis_contig10:3312538..3312557Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3312539..3312557 +
1695739738.4717228-UTR-S-ischiensis_contig10:3312538..33125571695739738.4717228-UTR-S-ischiensis_contig10:3312538..3312557Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3312539..3312557 +
1622815506.2007596-UTR-S-ischiensis_contig10:3312959..33132571622815506.2007596-UTR-S-ischiensis_contig10:3312959..3313257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3312960..3313257 +
1695739738.4919572-UTR-S-ischiensis_contig10:3312959..33132571695739738.4919572-UTR-S-ischiensis_contig10:3312959..3313257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3312960..3313257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.190078-CDS-S-ischiensis_contig10:3312557..33129591622815506.190078-CDS-S-ischiensis_contig10:3312557..3312959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3312558..3312959 +
1695739738.4818192-CDS-S-ischiensis_contig10:3312557..33129591695739738.4818192-CDS-S-ischiensis_contig10:3312557..3312959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3312558..3312959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1635.1

>prot_S-ischiensis_contig10.1635.1 ID=prot_S-ischiensis_contig10.1635.1|Name=mRNA_S-ischiensis_contig10.1635.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MICHVIRCDAIPNQRIQKCSSMTSHHQIESRERRRVWQGYLVYLARPTDG
CVAYASPTHAHQVRSTWEYTMLWSIWCTTIEWCPTAAVLVHVRTSARHSR
TGYLTNRGRRRRRRRRRVGGGRGERGERGGGGR*
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mRNA from alignment at S-ischiensis_contig10:3312539..3313257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1635.1 ID=mRNA_S-ischiensis_contig10.1635.1|Name=mRNA_S-ischiensis_contig10.1635.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=719bp|location=Sequence derived from alignment at S-ischiensis_contig10:3312539..3313257+ (Schizocladia ischiensis KU_0333)
CAGGGAGGGCGTGATACCGATGATATGTCATGTGATACGATGCGATGCAA
TACCAAACCAGAGAATCCAAAAGTGTTCATCAATGACATCGCATCATCAA
ATCGAATCGCGAGAGAGAAGGAGAGTATGGCAGGGCTACTTGGTTTACCT
CGCGCGCCCCACAGATGGCTGCGTTGCTTACGCTAGTCCCACCCACGCTC
ACCAAGTACGAAGTACTTGGGAGTACACGATGCTTTGGAGCATCTGGTGT
ACTACTATAGAGTGGTGTCCTACTGCCGCAGTCCTCGTGCATGTACGCAC
TAGTGCTAGGCACAGCCGCACGGGATATCTGACAAACCGAGGGAGGAGGA
GGAGGAGGAGAAGGAGGAGAGTGGGCGGAGGGAGGGGAGAGAGGGGGGAA
CGGGGAGGAGGAGGCCGATGAAAAGGATGAAGAGGAGGGGCAAGCCGGGG
AGCCCGTGGGATACACAGTTCACGCCGCTACTTAAAACACTGCAGTGGTA
CTACACTACTAACAATGCCTGCCAGGGGCGGGGGGGAGAATGCTCCGTCG
TCACCGGCGCCAAAGTGGCCAATGGTCTCGGGAGAAGGTGAGTAGAGTAC
ATATATACTGCGTACTTAGTATACTTTGTATACGAGTACGTACTTCAAAT
GTACTTCCACAAACGAGTGTGTACTCTACAGCACACTTGTGCTACTACAG
TATTCGTACCTTGTCCGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3312539..3313257+

>mRNA_S-ischiensis_contig10.1635.1 ID=mRNA_S-ischiensis_contig10.1635.1|Name=mRNA_S-ischiensis_contig10.1635.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig10:3312539..3313257+ (Schizocladia ischiensis KU_0333)
ATGATATGTCATGTGATACGATGCGATGCAATACCAAACCAGAGAATCCA
AAAGTGTTCATCAATGACATCGCATCATCAAATCGAATCGCGAGAGAGAA
GGAGAGTATGGCAGGGCTACTTGGTTTACCTCGCGCGCCCCACAGATGGC
TGCGTTGCTTACGCTAGTCCCACCCACGCTCACCAAGTACGAAGTACTTG
GGAGTACACGATGCTTTGGAGCATCTGGTGTACTACTATAGAGTGGTGTC
CTACTGCCGCAGTCCTCGTGCATGTACGCACTAGTGCTAGGCACAGCCGC
ACGGGATATCTGACAAACCGAGGGAGGAGGAGGAGGAGGAGAAGGAGGAG
AGTGGGCGGAGGGAGGGGAGAGAGGGGGGAACGGGGAGGAGGAGGCCGAT
GAATGATATGTCATGTGATACGATGCGATGCAATACCAAACCAGAGAATC
CAAAAGTGTTCATCAATGACATCGCATCATCAAATCGAATCGCGAGAGAG
AAGGAGAGTATGGCAGGGCTACTTGGTTTACCTCGCGCGCCCCACAGATG
GCTGCGTTGCTTACGCTAGTCCCACCCACGCTCACCAAGTACGAAGTACT
TGGGAGTACACGATGCTTTGGAGCATCTGGTGTACTACTATAGAGTGGTG
TCCTACTGCCGCAGTCCTCGTGCATGTACGCACTAGTGCTAGGCACAGCC
GCACGGGATATCTGACAAACCGAGGGAGGAGGAGGAGGAGGAGAAGGAGG
AGAGTGGGCGGAGGGAGGGGAGAGAGGGGGGAACGGGGAGGAGGAGGCCG
ATGA
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