mRNA_S-ischiensis_contig10.1624.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1624.1
Unique NamemRNA_S-ischiensis_contig10.1624.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3230192..3231967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1595
Cds size1437
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1624.1prot_S-ischiensis_contig10.1624.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3230348..3231967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4633715-UTR-S-ischiensis_contig10:3230191..32303471622815500.4633715-UTR-S-ischiensis_contig10:3230191..3230347Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3230192..3230347 +
1695739736.6574507-UTR-S-ischiensis_contig10:3230191..32303471695739736.6574507-UTR-S-ischiensis_contig10:3230191..3230347Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3230192..3230347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4770207-CDS-S-ischiensis_contig10:3230347..32304021622815500.4770207-CDS-S-ischiensis_contig10:3230347..3230402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3230348..3230402 +
1695739736.667905-CDS-S-ischiensis_contig10:3230347..32304021695739736.667905-CDS-S-ischiensis_contig10:3230347..3230402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3230348..3230402 +
1622815500.48822-CDS-S-ischiensis_contig10:3230585..32319671622815500.48822-CDS-S-ischiensis_contig10:3230585..3231967Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3230586..3231967 +
1695739736.6789863-CDS-S-ischiensis_contig10:3230585..32319671695739736.6789863-CDS-S-ischiensis_contig10:3230585..3231967Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3230586..3231967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1624.1

>prot_S-ischiensis_contig10.1624.1 ID=prot_S-ischiensis_contig10.1624.1|Name=mRNA_S-ischiensis_contig10.1624.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=479bp
MAARLVCAILGVTARTSLASELNAGQGQYGTNADGGIVVSLDPFEGGGTL
GEGEPASSSGSTSSWREDLLRWEEGRQLQLADEWAWEGSNSPTPSPALLY
GDDPVWWDGTTQSPTPSPDLYRPGDTWMPDPYTTASPTPSPDLGRPEDPT
WLDPANSPTPSPEDPTWLDPANSPRPSPEDPTWLDANGLPTPYPEDATWM
DPSNAPTPSSEDPTWLDANGLPTSYPEDATWMDPSYSPTPSPEDPTWLDP
NGLPTPYPEDATWMDPSYSPAPSPDDGTWWDETTHAPTASTWGDSEPCNK
GESPYPEDPTWMEPSNSPTPSPKDATWWDVTTHAPTASTWMDPSYSPTPS
PEDPTWLDPNGLYTPSPEDATWMDPSYSPTPSPEDATWMDPSYSRTPSPE
DPTWLDPNGLYTPSPEDATWMDPSYSPTPSPADPTWLDPNGLPTPSPEDA
TWMGPSDSPTPSPDLTWRGETAHPPTHSP
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mRNA from alignment at S-ischiensis_contig10:3230192..3231967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1624.1 ID=mRNA_S-ischiensis_contig10.1624.1|Name=mRNA_S-ischiensis_contig10.1624.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1776bp|location=Sequence derived from alignment at S-ischiensis_contig10:3230192..3231967+ (Schizocladia ischiensis KU_0333)
CGAGCGAACGCCTCCAGGGGGCCGCCGGTGCTCAGTGTCCCGGAGCCCCC
GGCCTCTACTGGTCATGGCCCCTGATCCCCTCCCGTTGGGGTGCCATGCC
ATGGAGCGGCCACCCGAGCACACAGGGAGAGGGGGGAGCTGCACACGGCG
GGGAAGATGGCCGCCCGACTCGTGTGTGCTATTTTGGGAGTGACTGCTCG
TACAAGCTTGGGTGAGTGGGTGCTGGCCGGCCTCCAGCAATGTTTCTGAC
TGTCTTGCCGTGCACTTGCTCCTGAAACATGTGCGGAGTCTGCCATGGTT
TGAACATTTCCTCACCGTTTGTGTGCAGTGCTTCTTGCCTGCCTGCCATG
TCCTAACCGTGTGTGTGCTTCTTGCCTGCCTGCCCCGTTGGCAGCGTCCG
AGCTGAATGCCGGCCAGGGCCAATATGGGACAAATGCTGATGGCGGAATC
GTGGTGAGCCTGGACCCGTTCGAGGGGGGGGGCACGCTTGGAGAGGGCGA
ACCAGCCAGCTCCAGCGGAAGCACGTCCTCTTGGCGCGAAGACCTTCTTC
GATGGGAGGAGGGGCGTCAGCTTCAGCTTGCCGACGAATGGGCGTGGGAG
GGCAGCAACTCGCCCACGCCCTCTCCTGCTCTTCTCTATGGGGACGACCC
CGTCTGGTGGGACGGGACCACCCAGTCGCCCACCCCATCTCCTGATCTCT
ACCGTCCCGGCGACACATGGATGCCAGACCCGTACACCACCGCCTCACCC
ACGCCCTCTCCCGACCTTGGCCGCCCCGAGGACCCCACCTGGTTGGACCC
GGCCAACTCCCCCACGCCCTCTCCTGAGGACCCCACCTGGTTGGACCCGG
CCAACTCCCCCAGACCCTCTCCTGAGGACCCCACCTGGCTGGATGCGAAC
GGCCTCCCCACGCCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCAA
CGCCCCCACGCCCTCTTCTGAGGACCCCACCTGGCTGGATGCGAACGGCC
TCCCCACGTCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCTACTCC
CCCACGCCCTCTCCTGAGGACCCCACCTGGCTGGATCCGAATGGCCTCCC
CACGCCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCTACTCCCCCG
CGCCCTCTCCTGATGATGGCACCTGGTGGGACGAGACCACCCACGCGCCC
ACCGCATCCACCTGGGGGGACTCGGAGCCGTGCAACAAGGGTGAGTCGCC
CTACCCTGAGGACCCCACCTGGATGGAGCCCAGCAACTCCCCCACGCCCT
CTCCCAAGGATGCCACCTGGTGGGACGTCACTACCCACGCGCCCACCGCA
TCCACCTGGATGGACCCCAGCTACTCCCCCACGCCCTCTCCCGAGGACCC
CACCTGGCTGGATCCGAACGGCCTCTACACACCCTCTCCTGAGGACGCCA
CCTGGATGGACCCCAGCTACTCCCCCACCCCCTCTCCTGAGGATGCCACC
TGGATGGACCCCAGCTACTCCCGCACGCCCTCTCCTGAGGACCCCACCTG
GCTGGATCCGAACGGCCTCTACACGCCCTCTCCCGAGGATGCCACCTGGA
TGGACCCCAGCTACTCCCCCACCCCCTCTCCCGCGGACCCCACCTGGCTG
GATCCGAACGGTCTCCCCACGCCCTCTCCCGAGGATGCCACCTGGATGGG
CCCCAGCGACTCCCCCACGCCCTCTCCTGACTTGACCTGGCGGGGCGAGA
CCGCTCACCCGCCCACCCACTCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3230192..3231967+

>mRNA_S-ischiensis_contig10.1624.1 ID=mRNA_S-ischiensis_contig10.1624.1|Name=mRNA_S-ischiensis_contig10.1624.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2874bp|location=Sequence derived from alignment at S-ischiensis_contig10:3230192..3231967+ (Schizocladia ischiensis KU_0333)
ATGGCCGCCCGACTCGTGTGTGCTATTTTGGGAGTGACTGCTCGTACAAG
CTTGGATGGCCGCCCGACTCGTGTGTGCTATTTTGGGAGTGACTGCTCGT
ACAAGCTTGGCGTCCGAGCTGAATGCCGGCCAGGGCCAATATGGGACAAA
TGCTGATGGCGGAATCGTGGTGAGCCTGGACCCGTTCGAGGGGGGGGGCA
CGCTTGGAGAGGGCGAACCAGCCAGCTCCAGCGGAAGCACGTCCTCTTGG
CGCGAAGACCTTCTTCGATGGGAGGAGGGGCGTCAGCTTCAGCTTGCCGA
CGAATGGGCGTGGGAGGGCAGCAACTCGCCCACGCCCTCTCCTGCTCTTC
TCTATGGGGACGACCCCGTCTGGTGGGACGGGACCACCCAGTCGCCCACC
CCATCTCCTGATCTCTACCGTCCCGGCGACACATGGATGCCAGACCCGTA
CACCACCGCCTCACCCACGCCCTCTCCCGACCTTGGCCGCCCCGAGGACC
CCACCTGGTTGGACCCGGCCAACTCCCCCACGCCCTCTCCTGAGGACCCC
ACCTGGTTGGACCCGGCCAACTCCCCCAGACCCTCTCCTGAGGACCCCAC
CTGGCTGGATGCGAACGGCCTCCCCACGCCCTATCCCGAGGATGCCACCT
GGATGGACCCCAGCAACGCCCCCACGCCCTCTTCTGAGGACCCCACCTGG
CTGGATGCGAACGGCCTCCCCACGTCCTATCCCGAGGATGCCACCTGGAT
GGACCCCAGCTACTCCCCCACGCCCTCTCCTGAGGACCCCACCTGGCTGG
ATCCGAATGGCCTCCCCACGCCCTATCCCGAGGATGCCACCTGGATGGAC
CCCAGCTACTCCCCCGCGCCCTCTCCTGATGATGGCACCTGGTGGGACGA
GACCACCCACGCGCCCACCGCATCCACCTGGGGGGACTCGGAGCCGTGCA
ACAAGGGTGAGTCGCCCTACCCTGAGGACCCCACCTGGATGGAGCCCAGC
AACTCCCCCACGCCCTCTCCCAAGGATGCCACCTGGTGGGACGTCACTAC
CCACGCGCCCACCGCATCCACCTGGATGGACCCCAGCTACTCCCCCACGC
CCTCTCCCGAGGACCCCACCTGGCTGGATCCGAACGGCCTCTACACACCC
TCTCCTGAGGACGCCACCTGGATGGACCCCAGCTACTCCCCCACCCCCTC
TCCTGAGGATGCCACCTGGATGGACCCCAGCTACTCCCGCACGCCCTCTC
CTGAGGACCCCACCTGGCTGGATCCGAACGGCCTCTACACGCCCTCTCCC
GAGGATGCCACCTGGATGGACCCCAGCTACTCCCCCACCCCCTCTCCCGC
GGACCCCACCTGGCTGGATCCGAACGGTCTCCCCACGCCCTCTCCCGAGG
ATGCCACCTGGATGGGCCCCAGCGACTCCCCCACGCCCTCTCCTGACTTG
ACCTGGCGGGGCGAGACCGCTCACCCGCCCACCCACTCCCCCCGTCCGAG
CTGAATGCCGGCCAGGGCCAATATGGGACAAATGCTGATGGCGGAATCGT
GGTGAGCCTGGACCCGTTCGAGGGGGGGGGCACGCTTGGAGAGGGCGAAC
CAGCCAGCTCCAGCGGAAGCACGTCCTCTTGGCGCGAAGACCTTCTTCGA
TGGGAGGAGGGGCGTCAGCTTCAGCTTGCCGACGAATGGGCGTGGGAGGG
CAGCAACTCGCCCACGCCCTCTCCTGCTCTTCTCTATGGGGACGACCCCG
TCTGGTGGGACGGGACCACCCAGTCGCCCACCCCATCTCCTGATCTCTAC
CGTCCCGGCGACACATGGATGCCAGACCCGTACACCACCGCCTCACCCAC
GCCCTCTCCCGACCTTGGCCGCCCCGAGGACCCCACCTGGTTGGACCCGG
CCAACTCCCCCACGCCCTCTCCTGAGGACCCCACCTGGTTGGACCCGGCC
AACTCCCCCAGACCCTCTCCTGAGGACCCCACCTGGCTGGATGCGAACGG
CCTCCCCACGCCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCAACG
CCCCCACGCCCTCTTCTGAGGACCCCACCTGGCTGGATGCGAACGGCCTC
CCCACGTCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCTACTCCCC
CACGCCCTCTCCTGAGGACCCCACCTGGCTGGATCCGAATGGCCTCCCCA
CGCCCTATCCCGAGGATGCCACCTGGATGGACCCCAGCTACTCCCCCGCG
CCCTCTCCTGATGATGGCACCTGGTGGGACGAGACCACCCACGCGCCCAC
CGCATCCACCTGGGGGGACTCGGAGCCGTGCAACAAGGGTGAGTCGCCCT
ACCCTGAGGACCCCACCTGGATGGAGCCCAGCAACTCCCCCACGCCCTCT
CCCAAGGATGCCACCTGGTGGGACGTCACTACCCACGCGCCCACCGCATC
CACCTGGATGGACCCCAGCTACTCCCCCACGCCCTCTCCCGAGGACCCCA
CCTGGCTGGATCCGAACGGCCTCTACACACCCTCTCCTGAGGACGCCACC
TGGATGGACCCCAGCTACTCCCCCACCCCCTCTCCTGAGGATGCCACCTG
GATGGACCCCAGCTACTCCCGCACGCCCTCTCCTGAGGACCCCACCTGGC
TGGATCCGAACGGCCTCTACACGCCCTCTCCCGAGGATGCCACCTGGATG
GACCCCAGCTACTCCCCCACCCCCTCTCCCGCGGACCCCACCTGGCTGGA
TCCGAACGGTCTCCCCACGCCCTCTCCCGAGGATGCCACCTGGATGGGCC
CCAGCGACTCCCCCACGCCCTCTCCTGACTTGACCTGGCGGGGCGAGACC
GCTCACCCGCCCACCCACTCCCCC
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