mRNA_S-ischiensis_contig10.1616.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1616.1
Unique NamemRNA_S-ischiensis_contig10.1616.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3146775..3150747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2326
Cds size1311
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1616.1prot_S-ischiensis_contig10.1616.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3146817..3149774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.3647568-UTR-S-ischiensis_contig10:3146774..31468161622815500.3647568-UTR-S-ischiensis_contig10:3146774..3146816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3146775..3146816 +
1695739736.588732-UTR-S-ischiensis_contig10:3146774..31468161695739736.588732-UTR-S-ischiensis_contig10:3146774..3146816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3146775..3146816 +
1622815500.4307597-UTR-S-ischiensis_contig10:3149774..31507471622815500.4307597-UTR-S-ischiensis_contig10:3149774..3150747Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3149775..3150747 +
1695739736.6445436-UTR-S-ischiensis_contig10:3149774..31507471695739736.6445436-UTR-S-ischiensis_contig10:3149774..3150747Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3149775..3150747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.379844-CDS-S-ischiensis_contig10:3146816..31475001622815500.379844-CDS-S-ischiensis_contig10:3146816..3147500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3146817..3147500 +
1695739736.5998316-CDS-S-ischiensis_contig10:3146816..31475001695739736.5998316-CDS-S-ischiensis_contig10:3146816..3147500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3146817..3147500 +
1622815500.3935926-CDS-S-ischiensis_contig10:3147842..31480161622815500.3935926-CDS-S-ischiensis_contig10:3147842..3148016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3147843..3148016 +
1695739736.6084592-CDS-S-ischiensis_contig10:3147842..31480161695739736.6084592-CDS-S-ischiensis_contig10:3147842..3148016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3147843..3148016 +
1622815500.4091532-CDS-S-ischiensis_contig10:3148416..31486071622815500.4091532-CDS-S-ischiensis_contig10:3148416..3148607Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3148417..3148607 +
1695739736.6201468-CDS-S-ischiensis_contig10:3148416..31486071695739736.6201468-CDS-S-ischiensis_contig10:3148416..3148607Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3148417..3148607 +
1622815500.4206176-CDS-S-ischiensis_contig10:3149512..31497741622815500.4206176-CDS-S-ischiensis_contig10:3149512..3149774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3149513..3149774 +
1695739736.6301222-CDS-S-ischiensis_contig10:3149512..31497741695739736.6301222-CDS-S-ischiensis_contig10:3149512..3149774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3149513..3149774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1616.1

>prot_S-ischiensis_contig10.1616.1 ID=prot_S-ischiensis_contig10.1616.1|Name=mRNA_S-ischiensis_contig10.1616.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=437bp
MASPKHDVWSTLGHAILSYVAQPSTLGEAAGVCKSFKELAQQPLLWQLVE
RTYYATQFSEGELLAGTTHDSPKDGQSRDACRSTAASRAQWPAGVKGRRT
LISLPTCCFDFAFTRDLLLAAGESGTLTVVNRVSGAVLLDAPVSTMTVLS
VWACQRDGTGDAAGLGQSGTNVRVLLGGVDKCLRVVDVSVPSETLRRSLE
ADDVETAGAVTATEQAAIQLDGAVRRVQADLKRYVAATATGQVHVLDAAT
LEQTQSFQAHEHSVTGCCLLLEARLCTLSVEGRALKVWSLAARGGKNAHA
VPLHTLDFSGSSPPSCMDMGWHKGTGFVSVGLSDGSICVCDTNRGTVMRR
LEGAHRGEVWDVAMSGCSVLSTGKDGRLAAHDLATGKVLFEAAAKWAIKL
WFDYSAACVLEFDGTVSLLRLAVAQIGAGGAGDDSG*
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mRNA from alignment at S-ischiensis_contig10:3146775..3150747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1616.1 ID=mRNA_S-ischiensis_contig10.1616.1|Name=mRNA_S-ischiensis_contig10.1616.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3973bp|location=Sequence derived from alignment at S-ischiensis_contig10:3146775..3150747+ (Schizocladia ischiensis KU_0333)
CAGCGACAGAGGCGGCGGCTGCAGCTTCTGCGGGTGCATGAGATGGCCTC
TCCCAAGCACGATGTCTGGTCCACCCTGGGCCATGCTATCCTGTCGTACG
TGGCACAGCCTTCCACGCTGGGGGAGGCTGCGGGGGTGTGCAAAAGCTTC
AAAGAGTTGGCCCAGCAACCCCTGCTTTGGCAATTGGTTGAACGCACGTA
CTACGCCACTCAATTCTCCGAGGGGGAGCTTTTGGCAGGAACAACTCACG
ATTCGCCAAAGGACGGACAGTCCAGGGACGCCTGCCGCAGCACAGCGGCT
TCTCGCGCGCAGTGGCCTGCAGGCGTGAAGGGCCGGCGGACGTTGATATC
TCTGCCGACGTGCTGCTTTGACTTTGCCTTCACTCGCGACCTGCTGCTGG
CTGCGGGTGAGAGCGGCACCCTCACGGTGGTGAACCGCGTCTCCGGAGCC
GTCCTGCTGGACGCTCCTGTTAGCACCATGACGGTGCTATCGGTGTGGGC
TTGCCAGCGCGACGGCACCGGGGATGCCGCGGGGCTGGGGCAGTCTGGTA
CCAACGTCCGCGTGCTGCTTGGGGGCGTGGATAAATGTCTGCGCGTCGTA
GACGTTAGCGTGCCCAGCGAAACCTTGAGGAGGAGCCTGGAAGCTGACGA
CGTGGAAACCGCTGGGGCTGTGACGGCTACGGAACAGGCGGCCATCCAGT
TGGATGGGGCTGTTAGGCGGGTACAGGTGCGGCCCGGGGTGGGGGGGCAC
ACTAAGTGCTGTGCTGCACGTGCGCAGCGCAGGCGCCGTGTTTGTCCCGT
GTGGTTTGCACTGTAGGCTGCGCGGGTGCTGCCGAATGTGTGAGCCCTCA
AGGATCTGACTGAAATTGGCAGCTGTTAGCCACCACAAGAGTGCGCTGGT
TGCGGTTGCATGCCATGGCAACCATTGGCCTGGCCCAGGGTTGGGCCTTT
GACCTGCCTGGCCATACCACAGGACCGCCCCTGGGCCCCTCCCTCACCAT
GCCTGGCCCTCCCGCTCCTCCTCCTCCTCCGCCTCCTCCTCTGCCTCCCA
TCGACATCTGCTCTACAGGCGGATTTGAAGCGGTACGTTGCCGCCACCGC
TACAGGCCAGGTCCACGTGCTCGATGCCGCCACCCTGGAGCAGACGCAGA
GCTTCCAGGCCCACGAGCATTCCGTCACGGGGTGCTGTCTGCTGCTGGAG
GCCCGTCTCTGCACCCTGTCTGTTGAGGGCCGCGCACTAAAGGTTTGGGG
CTCGGCGCACATGCACCGTGTCTGCCACACGCCCGCCTCCCTAGAGTCCT
CGTACCAGTCTCTGCAAGGGCAATTGCATTTAGGCCACGTGACTGAGTGC
TTGAATTTTGGGCTCAACCAGTAGACCCGACATGCCCGCTCCCCCCTTGC
GGTGTCTGCCCGCCTGCCTACTCTGAGTTATTGGATGCCTTCCACCGCCC
ATCTGTGTGCCTGCCTGCCTGCCGGCCAGCCTGCCTGCGTCCCTTCCCTG
CCTGATACCGCCCCGCCTACGTGACGTACACTGCTCCACTTATCTGCGCG
CCTGCCTTCCCACACGCTTGCCTACACCTGTTCCCTTGCCTGGCAACGGG
CTGTCTCGCCCGGCGGACGGCGGCGGCCAACGTCCTGCGCAGGTTTGGAG
CCTAGCAGCACGAGGGGGTAAAAACGCCCACGCCGTCCCGCTCCACACCT
TGGACTTTTCCGGCAGCAGCCCCCCGAGCTGCATGGACATGGGCTGGCAC
AAGGGCACGGGCTTTGTGTCGGTCGGCCTCTCGGACGGCAGCATCTGCGT
CTGTGACACGAACCGGGGCACGGTCATGCGGCGGTGAGCCTGATGAGGAG
GGCTTTCGTGACACAAAGTACGGTCGGCACAAACCCGGCATGCTCCGGCC
CGGACTACTATACTAGTAGTGGGGACATGAGAGGTCAAATGGCTAGAAAG
CAAATGTACTCCGGCAGGAGGGCAAACCCCATGGTTAAACTCAACTGTGT
AGTATGGTTAGAATGTACTCACAACGTGCTTGCCGTAGTCCCGAGACCAT
TGACCACGCGCCTCGGTCGAGACGGGGCAGGTTGTATGGTTAGTGGTCCT
CAACAGCTTGACCACATCTATGAACAGTGTAGTTGAGAGTCTATGGTTAA
ACAGCTACCTACTCCCGCACGAGGGCAAACCTGATGTTTCACGTTGCGCT
GTCGACTATGCACTCACGGCTACGTCCAAAGACATGCCAACGAGTACATA
CCTACTATGAAGCATACATGCATACAGCCAATGAATTGAGCTGTGTGTAC
GAGTACTCGAGCACTCATGTTGGGCAGGGAGCTGCCCCGTTCTGTGAGCA
CGCTAAGCTTGCCGGCTAGCGGCCCAGCGCACACCACGTGCGGGACCGCC
GGCTAGCCTCCTCACGGTAGCCATTGTGGCCGTTGGCCTCGCGTCCTACT
GCGATATGCACGACGGAGCACGCCGGGTTCTAGTCGGTCAAGCGTGACAT
GCGCCGAGTGGTCCACGGTGCTCTGACCGTGCTCGCCCCAAAGCTAATGT
GACTCTGGGTTCTTGCGATTGATGGCCCTGGCCGCCCTCTGGCCCGACCC
TCCGCACCCTGCCCGGACCGGCCCCGCATGTTCTCACCACAATCCGAAAC
TGCCGTTGCATGCATTGCCCCGCACTCGCACGCACCCCGGGGGGCGGGCG
CGGGCACTGTACCGGTGAAATCCGCGTGCTGTTTGCAGCTTGGAGGGGGC
CCACCGCGGGGAGGTGTGGGACGTAGCCATGTCTGGCTGCTCGGTGCTGA
GCACGGGCAAGGACGGGCGCTTGGCTGCGCACGACCTCGCCACCGGCAAG
GTGCTCTTCGAGGCCGCCGCCAAATGGGCGATAAAGCTGTGGTTCGACTA
CTCGGCGGCTTGCGTGCTGGAGTTTGACGGGACGGTCTCGCTGCTAAGGC
TGGCGGTGGCGCAGATCGGGGCCGGCGGCGCGGGCGACGACAGCGGGTGA
AAACGGCGGAAACGGGCTTTGCGCGGTGTGCGCTGAGGGCTGCCAGGCAT
TGAGGCACGCCGCGTAGGCTAGACCTTAGCTACCTATCTGCGATGCCAGG
TGCGGCCTCAGTATATACGAGTAGTACCCCCTCCCACCCTGGCTCTGCCA
GGGGAGGGAGGGGTCCTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGGT
CTCGGGACTACGGCAAGCACCACGTGAGTACATATATCGATATACTTCGG
AAGTACTTCAAAGTGAAGTATTGCTTCGAAACCTGTAGTAGTACAAGTAG
GCGGCACCGCTCGGCCCAGTCACAAAGCTGGACGTGGTACAGCGCTCGGC
AGCGTAGCTTATACTTCCAAGTACTTCGTACTTTGGGCCGTGCGAGCTTC
ATCTGCTGTCCCGCGGCTCTCGCATTCAAGTTCCTTTTCCCCCTCGTAGT
TTAACTCGTGTAGGCGCAAGTGGAGTGCCAGTGGTCAACTGCAGTAGCAA
CTTCCACAACTGTCAGAGTGCCGGCCGCGGCACGACCATCGCGTCCCTGC
CTGAAGCGTGACATCACTGAGGGTGAGGCGGTCCCCGCCCCGGCCCTGAT
AGAGATCATGTACATCTGTGTGGGCGGCGGGCTTGGGTGCTGATAAGCCC
AAGTACTTCGTGTACTGTACGCTACTACTTCAGGTGTAAACGGAACTATA
GGTATTAGTGTGCATGTACACCTTCCCGGGGTTCAAAGGGTGAATTACCC
CTGCATCACGCTGGCCGAGGCGCGCTATAGGTGGCCAATGATCTCGGGAC
TGCGGCAAGAACAGCGTGCGTGCGTGCATGTAGACCACGTCAGGTGGCAA
CCAACAAGGTACTTCTAAGTACGAGTACGATATGTGATGCAGTGGACTCG
GAGCTCACTTTGTTCACCCTCTTGTGCACTTCCCAGACTGTACACAGTAT
AAGACATACTCTGAAGCACATGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3146775..3150747+

>mRNA_S-ischiensis_contig10.1616.1 ID=mRNA_S-ischiensis_contig10.1616.1|Name=mRNA_S-ischiensis_contig10.1616.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2622bp|location=Sequence derived from alignment at S-ischiensis_contig10:3146775..3150747+ (Schizocladia ischiensis KU_0333)
ATGGCCTCTCCCAAGCACGATGTCTGGTCCACCCTGGGCCATGCTATCCT
GTCGTACGTGGCACAGCCTTCCACGCTGGGGGAGGCTGCGGGGGTGTGCA
AAAGCTTCAAAGAGTTGGCCCAGCAACCCCTGCTTTGGCAATTGGTTGAA
CGCACGTACTACGCCACTCAATTCTCCGAGGGGGAGCTTTTGGCAGGAAC
AACTCACGATTCGCCAAAGGACGGACAGTCCAGGGACGCCTGCCGCAGCA
CAGCGGCTTCTCGCGCGCAGTGGCCTGCAGGCGTGAAGGGCCGGCGGACG
TTGATATCTCTGCCGACGTGCTGCTTTGACTTTGCCTTCACTCGCGACCT
GCTGCTGGCTGCGGGTGAGAGCGGCACCCTCACGGTGGTGAACCGCGTCT
CCGGAGCCGTCCTGCTGGACGCTCCTGTTAGCACCATGACGGTGCTATCG
GTGTGGGCTTGCCAGCGCGACGGCACCGGGGATGCCGCGGGGCTGGGGCA
GTCTGGTACCAACGTCCGCGTGCTGCTTGGGGGCGTGGATAAATGTCTGC
GCGTCGTAGACGTTAGCGTGCCCAGCGAAACCTTGAGGAGGAGCCTGGAA
GCTGACGACGTGGAAACCGCTGGGGCTGTGACGGCTACGGAACAGGCGGC
CATCCAGTTGGATGGGGCTGTTAGGCGGGTACAGATGGCCTCTCCCAAGC
ACGATGTCTGGTCCACCCTGGGCCATGCTATCCTGTCGTACGTGGCACAG
CCTTCCACGCTGGGGGAGGCTGCGGGGGTGTGCAAAAGCTTCAAAGAGTT
GGCCCAGCAACCCCTGCTTTGGCAATTGGTTGAACGCACGTACTACGCCA
CTCAATTCTCCGAGGGGGAGCTTTTGGCAGGAACAACTCACGATTCGCCA
AAGGACGGACAGTCCAGGGACGCCTGCCGCAGCACAGCGGCTTCTCGCGC
GCAGTGGCCTGCAGGCGTGAAGGGCCGGCGGACGTTGATATCTCTGCCGA
CGTGCTGCTTTGACTTTGCCTTCACTCGCGACCTGCTGCTGGCTGCGGGT
GAGAGCGGCACCCTCACGGTGGTGAACCGCGTCTCCGGAGCCGTCCTGCT
GGACGCTCCTGTTAGCACCATGACGGTGCTATCGGTGTGGGCTTGCCAGC
GCGACGGCACCGGGGATGCCGCGGGGCTGGGGCAGTCTGGTACCAACGTC
CGCGTGCTGCTTGGGGGCGTGGATAAATGTCTGCGCGTCGTAGACGTTAG
CGTGCCCAGCGAAACCTTGAGGAGGAGCCTGGAAGCTGACGACGTGGAAA
CCGCTGGGGCTGTGACGGCTACGGAACAGGCGGCCATCCAGTTGGATGGG
GCTGTTAGGCGGGTACAGGCGGATTTGAAGCGGTACGTTGCCGCCACCGC
TACAGGCCAGGTCCACGTGCTCGATGCCGCCACCCTGGAGCAGACGCAGA
GCTTCCAGGCCCACGAGCATTCCGTCACGGGGTGCTGTCTGCTGCTGGAG
GCCCGTCTCTGCACCCTGTCTGTTGAGGGCCGCGCACTAAAGGCGGATTT
GAAGCGGTACGTTGCCGCCACCGCTACAGGCCAGGTCCACGTGCTCGATG
CCGCCACCCTGGAGCAGACGCAGAGCTTCCAGGCCCACGAGCATTCCGTC
ACGGGGTGCTGTCTGCTGCTGGAGGCCCGTCTCTGCACCCTGTCTGTTGA
GGGCCGCGCACTAAAGGTTTGGAGCCTAGCAGCACGAGGGGGTAAAAACG
CCCACGCCGTCCCGCTCCACACCTTGGACTTTTCCGGCAGCAGCCCCCCG
AGCTGCATGGACATGGGCTGGCACAAGGGCACGGGCTTTGTGTCGGTCGG
CCTCTCGGACGGCAGCATCTGCGTCTGTGACACGAACCGGGGCACGGTCA
TGCGGCGGTTTGGAGCCTAGCAGCACGAGGGGGTAAAAACGCCCACGCCG
TCCCGCTCCACACCTTGGACTTTTCCGGCAGCAGCCCCCCGAGCTGCATG
GACATGGGCTGGCACAAGGGCACGGGCTTTGTGTCGGTCGGCCTCTCGGA
CGGCAGCATCTGCGTCTGTGACACGAACCGGGGCACGGTCATGCGGCGCT
TGGAGGGGGCCCACCGCGGGGAGGTGTGGGACGTAGCCATGTCTGGCTGC
TCGGTGCTGAGCACGGGCAAGGACGGGCGCTTGGCTGCGCACGACCTCGC
CACCGGCAAGGTGCTCTTCGAGGCCGCCGCCAAATGGGCGATAAAGCTGT
GGTTCGACTACTCGGCGGCTTGCGTGCTGGAGTTTGACGGGACGGTCTCG
CTGCTAAGGCTGGCGGTGGCGCAGATCGGGGCCGGCGGCGCGGGCGACGA
CAGCGGGTGACTTGGAGGGGGCCCACCGCGGGGAGGTGTGGGACGTAGCC
ATGTCTGGCTGCTCGGTGCTGAGCACGGGCAAGGACGGGCGCTTGGCTGC
GCACGACCTCGCCACCGGCAAGGTGCTCTTCGAGGCCGCCGCCAAATGGG
CGATAAAGCTGTGGTTCGACTACTCGGCGGCTTGCGTGCTGGAGTTTGAC
GGGACGGTCTCGCTGCTAAGGCTGGCGGTGGCGCAGATCGGGGCCGGCGG
CGCGGGCGACGACAGCGGGTGA
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