mRNA_S-ischiensis_contig10.1606.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1606.1
Unique NamemRNA_S-ischiensis_contig10.1606.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3034652..3036105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size320
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1606.1prot_S-ischiensis_contig10.1606.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3034652..3036104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.0881476-CDS-S-ischiensis_contig10:3034651..30347031622815500.0881476-CDS-S-ischiensis_contig10:3034651..3034703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3034652..3034703 +
1695739736.5051177-CDS-S-ischiensis_contig10:3034651..30347031695739736.5051177-CDS-S-ischiensis_contig10:3034651..3034703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3034652..3034703 +
1622815500.097833-CDS-S-ischiensis_contig10:3034859..30349621622815500.097833-CDS-S-ischiensis_contig10:3034859..3034962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3034860..3034962 +
1695739736.5153143-CDS-S-ischiensis_contig10:3034859..30349621695739736.5153143-CDS-S-ischiensis_contig10:3034859..3034962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3034860..3034962 +
1622815500.110728-CDS-S-ischiensis_contig10:3035941..30361041622815500.110728-CDS-S-ischiensis_contig10:3035941..3036104Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3035942..3036104 +
1695739736.525512-CDS-S-ischiensis_contig10:3035941..30361041695739736.525512-CDS-S-ischiensis_contig10:3035941..3036104Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3035942..3036104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1606.1

>prot_S-ischiensis_contig10.1606.1 ID=prot_S-ischiensis_contig10.1606.1|Name=mRNA_S-ischiensis_contig10.1606.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
LSVGRSAPAWRRGSTMDAQDAETFGDLDTADDGLPDFFTHGAGTDGDKAL
DSLMGDLKVSALADGEDLGNDLYSGLDNLPEFFQTGASGGAHGEPASGAL
QGAGPL
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mRNA from alignment at S-ischiensis_contig10:3034652..3036105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1606.1 ID=mRNA_S-ischiensis_contig10.1606.1|Name=mRNA_S-ischiensis_contig10.1606.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1454bp|location=Sequence derived from alignment at S-ischiensis_contig10:3034652..3036105+ (Schizocladia ischiensis KU_0333)
CTGAGCGTGGGGCGGAGTGCCCCCGCTTGGCGCAGGGGCAGTACCATGGA
CGGTGAGATGCATCAAATTGCGTGTCCAACGATGGCTCACGTTGGATGGG
TTCGTGTGGTTCCTGGCATTATGACTGCTTCTTTGGCAGATGGGAACGGT
TCCTTGGTTGGCGCGTGACACCCGCCCCCCCTGCCCCTCGCCCTTCCGTG
CACGGCAGCTCAAGACGCCGAAACGTTTGGGGACCTGGACACTGCCGACG
ATGGACTTCCAGACTTCTTTACCCATGGCGCTGGCACAGATGGCGACAAG
GCTCTTGACAGGTGTAGATCAGACACCACAAACGGCACGTTGCACTTTGC
CATTGCTCTTTCATTTACGCCCAGGGGCTGCAACAACTCACTTTTGCCAT
CAACCACTAGTCCTGCGTCCGGAGTGGAGCCAACTCGCGTTTTGTCATTG
CAGATTATCTGTACCCCAGCGGTTGCATCAACTTGACGGGTTGCTATGGT
ACATCGCCGGCACGGCGTGTCGGGGGCTCCGGCAAGGTCCAGGCGTGCAC
CCAGGGTGGCGGCGTGATCCGGTGGCATGTGTGTAGGTGGAGGCCTGCTC
CATCCCCCCCAGAGTGGAAAACTCGACATGCCGGGGACGGGGAGCACCCC
GCTTGGAGGGAAGTCTGCTGTTTCACTACGAAGTAGGTACTCAGAAGGGC
AAAGCAGATCAGCCACACACGCTGCCGGATCCAAAGCAAACACGCCGCAC
AGCGTTGGAGGCGCCGCCTGTCGCCTTTCGTCTCAGGCCGCCCTTTGTGG
GCGAGCAAACTCAAGAACATTCGGGCTTTTGTTGCCGCCACCGTGTGGCT
GTCCTACTTAACGCAAGCGCGGGTAAATACCAAACTCGTATACAGAGGTC
TTGGAGGGCTGCACTCTTGTAAGAGGCTGAAAGGGGCAGAGGGGGGGCGG
GGGGGCAGAACCAGGACACACCTGGGGGCGCTGGCCGACGCCCCTTGCGG
GCATGGGATATTTCCCGTCACCAACCGGGGATGGGGGGGGGTATGGACTT
GGCCACCCCTCCGCTTCTGCCACCCCCTCCCACCCGGCTCTGCCAGGGGA
GGGAGGGGGCCAGCTTCGTCTCGACAGAGGCGCGTGGTCAATGGTCTCGG
GACTGCGGCAAGCACCACATGAGTACATATGTATACTTCGAAGAATATAT
AACCCACCCGCCCGCCCGCCCGCTGCCCTCATGTGCGCCTTTTGCCGCCG
CGCTCTCTTCTTTTGCCTCTCCCCGCGGACGCCAACCCAGCCTCATGGGC
GACCTCAAGGTCAGCGCGCTGGCGGATGGGGAGGACCTCGGGAACGACCT
ATACTCGGGCCTGGACAACCTGCCCGAGTTCTTCCAGACCGGCGCCTCGG
GCGGCGCCCATGGGGAGCCAGCGTCGGGAGCCTTGCAGGGGGCGGGGCCG
CTTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3034652..3036105+

>mRNA_S-ischiensis_contig10.1606.1 ID=mRNA_S-ischiensis_contig10.1606.1|Name=mRNA_S-ischiensis_contig10.1606.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig10:3034652..3036105+ (Schizocladia ischiensis KU_0333)
CTGAGCGTGGGGCGGAGTGCCCCCGCTTGGCGCAGGGGCAGTACCATGGA
CGCTGAGCGTGGGGCGGAGTGCCCCCGCTTGGCGCAGGGGCAGTACCATG
GACGCTCAAGACGCCGAAACGTTTGGGGACCTGGACACTGCCGACGATGG
ACTTCCAGACTTCTTTACCCATGGCGCTGGCACAGATGGCGACAAGGCTC
TTGACAGCTCAAGACGCCGAAACGTTTGGGGACCTGGACACTGCCGACGA
TGGACTTCCAGACTTCTTTACCCATGGCGCTGGCACAGATGGCGACAAGG
CTCTTGACAGCCTCATGGGCGACCTCAAGGTCAGCGCGCTGGCGGATGGG
GAGGACCTCGGGAACGACCTATACTCGGGCCTGGACAACCTGCCCGAGTT
CTTCCAGACCGGCGCCTCGGGCGGCGCCCATGGGGAGCCAGCGTCGGGAG
CCTTGCAGGGGGCGGGGCCGCTTCCTCATGGGCGACCTCAAGGTCAGCGC
GCTGGCGGATGGGGAGGACCTCGGGAACGACCTATACTCGGGCCTGGACA
ACCTGCCCGAGTTCTTCCAGACCGGCGCCTCGGGCGGCGCCCATGGGGAG
CCAGCGTCGGGAGCCTTGCAGGGGGCGGGGCCGCTT
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