mRNA_S-ischiensis_contig10.1600.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1600.1
Unique NamemRNA_S-ischiensis_contig10.1600.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: K3X7U2_GLOUD (PHD-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7U2_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 4.040e-7
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 2 
Query:   83 FQVGDCVDVMHRLWPGSNKQGGVARVKVVH--DDGT-----YDVKYVTENRSERRLEPRFILQAQAFQE 268
            FQV D V V+ R W GSNK GGVARV+ VH  D+G      YDV YV  N  E+R+E  ++   Q  +E
Sbjct:  894 FQVNDVVLVLAREWIGSNKPGGVARVRAVHKVDNGGKEELFYDVAYVLTNAKEKRVEAEYVRAYQKMEE 962
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: A0A7S2RRG2_9STRA (RING-type E3 ubiquitin transferase BRCA1 n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RRG2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.060e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:   83 FQVGDCVDVMHRLWPGSNKQGGVARVKVVHDDGTYDVKYVTENRSERRL 229
            F VG+ V V  R++PGSNK GG A++  V+DD TYDV+Y+    +E+R+
Sbjct:  623 FVVGNTVTVSRRMYPGSNKPGGAAKITKVNDDDTYDVRYIVARNTEKRV 671
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: A0A485LN11_9STRA (Aste57867_23576 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN11_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-6
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:   83 FQVGDCVDVMHRLWPGSNKQGGVARVKVVHDDGTYDVKYVTENR 214
            F VG+ VDVM RLW GSNK GGV R+K  H+   YD+ YV  +R
Sbjct: 1055 FNVGELVDVMPRLWTGSNKPGGVGRIKKKHEGDKYDIDYVLGSR 1098
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: A0A662XFX0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFX0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.700e-5
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 2 
Query:   83 FQVGDCVDVMHRLWPGSNKQGGVARVKVVHDDGT---YDVKYVTENRSERRLEPRFILQAQA 259
            F V D V+V+ R W GSNK GGVARVK V   G    YDV+YV     E+ +  RF+ + Q+
Sbjct: 1364 FAVNDVVEVLAREWRGSNKPGGVARVKAVAVGGEEVFYDVRYVVGAGKEKHVAARFVRRYQS 1425
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: A0A485KVR3_9STRA (Aste57867_12351 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVR3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.790e-5
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2 
Query:   92 GDCVDVMHRLWPGSNKQGGVARVKVVHDDGTYDVKYVTENRSERRLEPRFI 244
            G  V V  R WPG NK+GGVARV+ V+ DGT +VKYV     +R + P  I
Sbjct:   35 GTLVMVDPRFWPGMNKEGGVARVERVNQDGTVNVKYVVVGGRDRNIPPACI 85
[Close]
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Match: A0A5D6Y5V2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5V2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.320e-5
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 2 
Query:   26 GLFGVHARPDQPAAATLVT-----FQVGDCVDVMHRLWPGSNKQGGVARVKVVH---DDGT------YDVKYVTENRSERRLEPRFI 244
            G  G  A   + AA T  T     FQV D V ++ R W GSNK GGVAR++ VH   D  T      YD+ YV  +  ++R+E  ++
Sbjct: 1391 GDSGTSAPRGKAAAGTPTTVPDRVFQVNDVVMILPREWIGSNKPGGVARIRAVHTSVDASTGETERFYDITYVLSSSKDKRVEAEYV 1477
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
K3X7U2_GLOUD4.040e-747.83PHD-type domain-containing protein n=1 Tax=Globisp... [more]
A0A7S2RRG2_9STRA4.060e-748.98RING-type E3 ubiquitin transferase BRCA1 n=2 Tax=l... [more]
A0A485LN11_9STRA1.030e-656.82Aste57867_23576 protein n=1 Tax=Aphanomyces stella... [more]
A0A662XFX0_9STRA1.700e-546.77Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A485KVR3_9STRA1.790e-550.98Aste57867_12351 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6Y5V2_9STRA2.320e-537.93Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2993876..2995540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.041625-CDS-S-ischiensis_contig10:2993875..29941311622815500.041625-CDS-S-ischiensis_contig10:2993875..2994131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2993876..2994131 +
1695739736.4839444-CDS-S-ischiensis_contig10:2993875..29941311695739736.4839444-CDS-S-ischiensis_contig10:2993875..2994131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2993876..2994131 +
1622815500.0524256-CDS-S-ischiensis_contig10:2995402..29955391622815500.0524256-CDS-S-ischiensis_contig10:2995402..2995539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2995403..2995539 +
1695739736.494899-CDS-S-ischiensis_contig10:2995402..29955391695739736.494899-CDS-S-ischiensis_contig10:2995402..2995539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2995403..2995539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1600.1prot_S-ischiensis_contig10.1600.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2993876..2995539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1600.1

>prot_S-ischiensis_contig10.1600.1 ID=prot_S-ischiensis_contig10.1600.1|Name=mRNA_S-ischiensis_contig10.1600.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
GGETRIGRGAVRRARETGPAGSGHAGDLPGRGLRGRDAPVVAREQQARGR
GTGEGGARRRHVRRQVCHGEPVGAAVGAAVHPPGPGISGRRPQGPLARTR
RRCRTAQAKVYREPRFTGKWPCRYSQQRQRR
back to top

mRNA from alignment at S-ischiensis_contig10:2993876..2995540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1600.1 ID=mRNA_S-ischiensis_contig10.1600.1|Name=mRNA_S-ischiensis_contig10.1600.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1665bp|location=Sequence derived from alignment at S-ischiensis_contig10:2993876..2995540+ (Schizocladia ischiensis KU_0333)
GGAGGGGAGACACGGATCGGGAGGGGGGCTGTTCGGCGTGCACGCGAGAC
CGGACCAGCCGGCAGCGGCCACGCTGGTGACCTTCCAGGTCGGGGACTGC
GTGGACGTGATGCACCGGTTGTGGCCCGGGAGCAACAAGCAAGGGGGCGT
GGCACGGGTGAAGGTGGTGCACGACGACGGCACGTACGACGTCAAGTATG
TCACGGAGAACCGGTCGGAGCGGCGGTTGGAGCCGCGGTTCATCCTCCAG
GCCCAGGTGCGGGGCGGGGGGCGGCGGGGTTTACGATGTGGACTGTATGT
AGCGGATGATTGATGTGTTTGTCGGCAACGTGCGGCGGTCGTTGCACAGG
TTTCGATGTTTGGTGATCTATCGACATATTCTGGGTCGGTGTACCCGGGT
ATATACTACTTGCGTACGTAGTATATATGTACTCATCAGCTTAGTTGTCT
TGCGGCATAACCGTGCAAGGCGTGCTTAGCCGACAGCCCTCAGTCGAAAC
TTCGGGTTTGCCCTCCAACAGGAGTATACACTACGTTCAACCAACTAGAG
TAGTTCAGGTATCTCATTGAGAAGACTTTTGGTGCGAACTTACCTGGCCT
CTCCTCCGACCCTGCGGCTGCCGCCATTGCTGTTGTGGTGGTCCTTCTGG
TGTGTGAGACGTGTGCCTGCCAGGTCGATGTACGTGCAGCAGGATCGACC
CGTAGCTCGTTGTTGAGGGAACATGCTACTTCGAAGTACTTCGAAGTACA
ATGTAGGAGGCTCAAGCTTCGTGTTTGCCCTCTGACAGCTACACTACTGT
ACGTTGAACCAACCAACTAAAAAAAGTACTGTACGTAGGGTTTTTCATTG
AGAAGGCTTTCGGTGGCATGGCCAAGAGGCAAAGCCGGCAAGCTCCGGAC
GCGGCCCAGGCTGGGTCGATACATCAGTTGTTGTTACTTCGAAGTAGGTC
GGCATATCCGCCATCTACTCTGGCGCGAGGTCAATGGTCTCGGGACTACG
GCAAGCGCCACGTGAGTACATATATACTCTGAAGTATGTGAGTAGTTGTT
CCATGTTCGGTTTTGATATACTCCGTATGCAGGGGAGGGAGGGTGCCTGC
TCCGTCTCGATCGAGGCGCGTGGTCAATGTTCTCGGGACTATGGCACGCA
CGACGTGCGTACATGTATATGTATATATATATATGCATGTAGAGTCTCCG
TCTCGTCCGAGGTGTGTGTTCAATGATCTCGGGACTATGGCAATCACCAC
GCGGGCACATATATACTTCGAAGTATATATGTAGAGTACTCCCGGAGTAT
TTGATACTTCCAAGTATATCATCGGCTCATTTCGTTTCCCATTCAATGCA
CACCCAACATCCAGATGCCTACCTTCCATTTGCGTCCCCCCCTTTCCACA
CCGTGCGGTGCGCCTTCCCTGCCGTGTGGGCGGACTCATGTACGGGTAGG
TACTGTAGCTCTTTTATGGTCGGCATCCCGCCCCATTTTTTGCCCCAACC
TCACACCAAACGCCAATCGGACGGCAGGCATTTCAGGAAGACGGCCCCAA
GGGCCGCTTGCGCGCACCAGGCGCCGATGCCGGACCGCCCAAGCGAAGGT
GTACCGGGAGCCACGTTTCACGGGGAAATGGCCCTGCAGGTACAGCCAGC
AACGGCAGCGGCGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:2993876..2995540+

>mRNA_S-ischiensis_contig10.1600.1 ID=mRNA_S-ischiensis_contig10.1600.1|Name=mRNA_S-ischiensis_contig10.1600.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig10:2993876..2995540+ (Schizocladia ischiensis KU_0333)
GGAGGGGAGACACGGATCGGGAGGGGGGCTGTTCGGCGTGCACGCGAGAC
CGGACCAGCCGGCAGCGGCCACGCTGGTGACCTTCCAGGTCGGGGACTGC
GTGGACGTGATGCACCGGTTGTGGCCCGGGAGCAACAAGCAAGGGGGCGT
GGCACGGGTGAAGGTGGTGCACGACGACGGCACGTACGACGTCAAGTATG
TCACGGAGAACCGGTCGGAGCGGCGGTTGGAGCCGCGGTTCATCCTCCAG
GCCCAGGGAGGGGAGACACGGATCGGGAGGGGGGCTGTTCGGCGTGCACG
CGAGACCGGACCAGCCGGCAGCGGCCACGCTGGTGACCTTCCAGGTCGGG
GACTGCGTGGACGTGATGCACCGGTTGTGGCCCGGGAGCAACAAGCAAGG
GGGCGTGGCACGGGTGAAGGTGGTGCACGACGACGGCACGTACGACGTCA
AGTATGTCACGGAGAACCGGTCGGAGCGGCGGTTGGAGCCGCGGTTCATC
CTCCAGGCCCAGGCATTTCAGGAAGACGGCCCCAAGGGCCGCTTGCGCGC
ACCAGGCGCCGATGCCGGACCGCCCAAGCGAAGGTGTACCGGGAGCCACG
TTTCACGGGGAAATGGCCCTGCAGGTACAGCCAGCAACGGCAGCGGCGGG
CATTTCAGGAAGACGGCCCCAAGGGCCGCTTGCGCGCACCAGGCGCCGAT
GCCGGACCGCCCAAGCGAAGGTGTACCGGGAGCCACGTTTCACGGGGAAA
TGGCCCTGCAGGTACAGCCAGCAACGGCAGCGGCGG
back to top