mRNA_S-ischiensis_contig10.1598.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1598.1
Unique NamemRNA_S-ischiensis_contig10.1598.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1598.1 vs. uniprot
Match: D7FIR1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-11
Identity = 59/152 (38.82%), Postives = 74/152 (48.68%), Query Frame = 1 
Query:  277 WTEGMDGLLATLVHELEFDFEAVARGMAAGVEPCAGGEGAAVTADECRRRWACLDMEACGPDEMDMGDESWDEEEGDGDVAARDAEERCSDGGARVCSAVLENAGLSFEQLLRNCEGKRSRFLRPPVDLPSMEDASS----DDGSXXXDNDE 720
            WT   D  LA LV E EF+F+ VA   ++ V    GGE  A+TA+ECR R+A  D E    +E + GD+     EG       D +       A     V+ENAGLSF  L R     +SRFL PP DLPS  D       DD +   D D+
Sbjct:  608 WTASRDWALARLVRECEFEFDLVAARFSSCVASGDGGEEEAITAEECRVRFARFDRE----EEDNAGDDMGGGGEGYNHNLVPDLD-------AIPAPGVIENAGLSFADLERKARNMKSRFLEPPKDLPSTRDGDDRLDGDDDAKDGDADD 748
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BLAST of mRNA_S-ischiensis_contig10.1598.1 vs. uniprot
Match: A0A6H5KFG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.420e-7
Identity = 75/237 (31.65%), Postives = 93/237 (39.24%), Query Frame = 1 
Query:  163 FQRLLKAAAKEVAAETAEAKDISRAVTG--ADPAKNPPEP-----------------------------------WTEGMDGLLATLVHELEFDFEAVARGMAAGV---EPCAGGEGAAVTADECRRRWACLDMEACGPDEMDMGDESWDEEEGDGDVAARDAEERCSDGGARVCSAVLENAGLSFEQLLRNCEGKRSR-------------------------FLRPPVDLPSMED 678
            FQR L+ A+ EV+AE A +  I  A +G   +PA+N  +P                                   WT   D  LA LV   EFDF+ VA   ++ +   + C  GE  AVTA+ECR R+A  D E  G    DMG  S    EG    A  D +       A     V+ENAGLSF  L R     +SR                         FL PP DLPS  D
Sbjct:  571 FQRRLEEASAEVSAEAAASPQIVTATSGPRGNPAENTQQPQRHRGEQVPFPGATEGSGMCDPGGGVGGGWSGGRQWTASKDRALARLVRGCEFDFDLVAARFSSAIASGDRC--GEEEAVTAEECRVRFARFDREEEGNAGDDMGGGS----EGYNHNAVPDLD-------AIPAPGVIENAGLSFADLERKARNMKSRYNSILISPDWPFLPQTVAGRFGLARFLEPPKDLPSTRD 794
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIR1_ECTSI1.380e-1138.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KFG8_9PHAE2.420e-731.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2988150..2989723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FIR1
Preferred nameDNAAF1
KEGG koko:K19750
GOsGO:0000003,GO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003146,GO:0003305,GO:0003313,GO:0003314,GO:0003341,GO:0003352,GO:0003356,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007276,GO:0007283,GO:0007368,GO:0007369,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016020,GO:0016043,GO:0016477,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030323,GO:0030324,GO:0031016,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036158,GO:0036159,GO:0040011,GO:0040012,GO:0040017,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0044877,GO:0048232,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051272,GO:0051641,GO:0051674,GO:0051704,GO:0055123,GO:0060026,GO:0060027,GO:0060271,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0060972,GO:0060973,GO:0061008,GO:0061371,GO:0065003,GO:0065007,GO:0070013,GO:0070286,GO:0070727,GO:0070840,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0071944,GO:0072001,GO:0072359,GO:0097014,GO:0098916,GO:0099536,GO:0099537,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:2000145,GO:2000147,GO:2000155
EggNOG free text desc.dynein complex binding
EggNOG OGs2CMIN@1,2QQFE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-20_003270.1
Exons1
Model size1574
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1598.1prot_S-ischiensis_contig10.1598.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2988438..2988956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.486083-UTR-S-ischiensis_contig10:2988149..29884371622815537.486083-UTR-S-ischiensis_contig10:2988149..2988437Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2988150..2988437 +
1695739755.9971492-UTR-S-ischiensis_contig10:2988149..29884371695739755.9971492-UTR-S-ischiensis_contig10:2988149..2988437Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2988150..2988437 +
1622815537.5110004-UTR-S-ischiensis_contig10:2988956..29897231622815537.5110004-UTR-S-ischiensis_contig10:2988956..2989723Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2988957..2989723 +
1695739756.022045-UTR-S-ischiensis_contig10:2988956..29897231695739756.022045-UTR-S-ischiensis_contig10:2988956..2989723Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2988957..2989723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.500417-CDS-S-ischiensis_contig10:2988437..29889561622815537.500417-CDS-S-ischiensis_contig10:2988437..2988956Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2988438..2988956 +
1695739756.0118742-CDS-S-ischiensis_contig10:2988437..29889561695739756.0118742-CDS-S-ischiensis_contig10:2988437..2988956Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2988438..2988956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1598.1

>prot_S-ischiensis_contig10.1598.1 ID=prot_S-ischiensis_contig10.1598.1|Name=mRNA_S-ischiensis_contig10.1598.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
MDGLLATLVHELEFDFEAVARGMAAGVEPCAGGEGAAVTADECRRRWACL
DMEACGPDEMDMGDESWDEEEGDGDVAARDAEERCSDGGARVCSAVLENA
GLSFEQLLRNCEGKRSRFLRPPVDLPSMEDASSDDGSDDSDNDEGEKLLS
REDIKAAMVARTAASARQAKAA*
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mRNA from alignment at S-ischiensis_contig10:2988150..2989723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1598.1 ID=mRNA_S-ischiensis_contig10.1598.1|Name=mRNA_S-ischiensis_contig10.1598.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1574bp|location=Sequence derived from alignment at S-ischiensis_contig10:2988150..2989723+ (Schizocladia ischiensis KU_0333)
GTTCACTCTGCCCACAGCTGCTTACCCCCCCTCGAGGCAATGGTACAACT
ATCTTTGAGACCCCCAGGGAAATGAGCCCAACGCCCCCACCAACCTCGAC
TTTCCTACCAGGCCAAGGGCGACGGCGTGCTGGAGCGGCCCACGGCGCAA
GCGGACTCCACCTTCCAGAGGCTGCTCAAGGCGGCCGCCAAGGAGGTTGC
GGCCGAGACGGCCGAGGCAAAAGACATATCCAGGGCCGTGACTGGCGCAG
ACCCTGCCAAGAACCCCCCCGAGCCCTGGACGGAGGGCATGGACGGGCTT
TTGGCCACCCTCGTCCACGAGCTCGAATTCGACTTCGAGGCCGTGGCACG
GGGCATGGCGGCGGGGGTGGAGCCATGCGCGGGGGGCGAGGGCGCGGCGG
TGACGGCAGACGAGTGCCGCCGTCGGTGGGCCTGCCTGGACATGGAAGCC
TGCGGCCCGGACGAGATGGACATGGGAGACGAGAGCTGGGACGAGGAGGA
GGGGGATGGTGACGTCGCCGCCCGCGATGCTGAGGAAAGGTGCTCGGACG
GGGGGGCGCGAGTCTGCTCGGCTGTGCTCGAAAACGCCGGGCTGTCGTTC
GAGCAGCTGCTGAGGAACTGCGAGGGCAAGAGGTCCCGCTTTCTCCGGCC
CCCGGTGGACCTGCCGTCCATGGAGGACGCGAGCAGCGATGACGGCTCTG
ACGACTCCGACAACGATGAGGGGGAGAAGTTGCTGAGCAGGGAGGACATC
AAGGCGGCCATGGTGGCGCGCACCGCGGCCTCCGCCAGGCAAGCCAAGGC
AGCCTAAGGGGTAGCAGGCGTCTTGTCGCTGGGCTAGGGGTCTGACAACA
GGAGAGGACTCCCAGGGAGGGGGTTGTCAGTAGTGGTGGTGGCGGTGGCG
GTGCAGGGCGGTACTTATCACAGCAGTAGCCAAAGCGTTCAGGCTGACGG
GGTATGAGTACTTGTATGTGTATGTAGATGAAGCGTGAGGACAGCAGGCA
TGGGGGGAACTCCGAGCCGCTGCCCGGGCCGACCTGCCCCGTCGCCGGAC
AAGGTCAAACCTGCCCAGGATAGATGAACGCAGCACGGACTGAATTGCCG
AGGGTGTCCATCCTCTCTCTCTCTCTCTCTCTCCTCGTGTGGATCAGCCG
ACACGTGCTGTACTGTACAACAGTACTCTACTGTACTTGCGGAAGCAAGT
AGGTACTCTACTCGAGTACTGTAGTGCCAAAATACTCCGGGCAGCGTCCT
CCCATTCTATAGCTGGTGGATTCCACTGCACTTACGGAGGCACTGTACAT
AAGAACACCTACTGTACTAGTGTACTCCAAACACCGACGAAGGGTCCTCC
TGGCCTGTTGAAGGTGGACATAACTCCGGCACATCACGATCGCCCCACGA
GCACGTACGTCATGCTTCCCGAGCCGTGGACTGACTTGACCCGCTTGAGG
TGGCGCAGGGTGTTGACGAGTGCCCGCACGGTCGCCTGCGAGGGTGTGGG
GGGCGCGGAACACGTGCAGTGCGTACCGTCGGCGTGGCAGCGGGGCAGAC
ACACAGTGATGGGCAACATGTCAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2988150..2989723+

>mRNA_S-ischiensis_contig10.1598.1 ID=mRNA_S-ischiensis_contig10.1598.1|Name=mRNA_S-ischiensis_contig10.1598.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig10:2988150..2989723+ (Schizocladia ischiensis KU_0333)
ATGGACGGGCTTTTGGCCACCCTCGTCCACGAGCTCGAATTCGACTTCGA
GGCCGTGGCACGGGGCATGGCGGCGGGGGTGGAGCCATGCGCGGGGGGCG
AGGGCGCGGCGGTGACGGCAGACGAGTGCCGCCGTCGGTGGGCCTGCCTG
GACATGGAAGCCTGCGGCCCGGACGAGATGGACATGGGAGACGAGAGCTG
GGACGAGGAGGAGGGGGATGGTGACGTCGCCGCCCGCGATGCTGAGGAAA
GGTGCTCGGACGGGGGGGCGCGAGTCTGCTCGGCTGTGCTCGAAAACGCC
GGGCTGTCGTTCGAGCAGCTGCTGAGGAACTGCGAGGGCAAGAGGTCCCG
CTTTCTCCGGCCCCCGGTGGACCTGCCGTCCATGGAGGACGCGAGCAGCG
ATGACGGCTCTGACGACTCCGACAACGATGAGGGGGAGAAGTTGCTGAGC
AGGGAGGACATCAAGGCGGCCATGGTGGCGCGCACCGCGGCCTCCGCCAG
GCAAGCCAAGGCAGCCTAAATGGACGGGCTTTTGGCCACCCTCGTCCACG
AGCTCGAATTCGACTTCGAGGCCGTGGCACGGGGCATGGCGGCGGGGGTG
GAGCCATGCGCGGGGGGCGAGGGCGCGGCGGTGACGGCAGACGAGTGCCG
CCGTCGGTGGGCCTGCCTGGACATGGAAGCCTGCGGCCCGGACGAGATGG
ACATGGGAGACGAGAGCTGGGACGAGGAGGAGGGGGATGGTGACGTCGCC
GCCCGCGATGCTGAGGAAAGGTGCTCGGACGGGGGGGCGCGAGTCTGCTC
GGCTGTGCTCGAAAACGCCGGGCTGTCGTTCGAGCAGCTGCTGAGGAACT
GCGAGGGCAAGAGGTCCCGCTTTCTCCGGCCCCCGGTGGACCTGCCGTCC
ATGGAGGACGCGAGCAGCGATGACGGCTCTGACGACTCCGACAACGATGA
GGGGGAGAAGTTGCTGAGCAGGGAGGACATCAAGGCGGCCATGGTGGCGC
GCACCGCGGCCTCCGCCAGGCAAGCCAAGGCAGCCTAA
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