mRNA_S-ischiensis_contig10.1590.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1590.1
Unique NamemRNA_S-ischiensis_contig10.1590.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1590.1 vs. uniprot
Match: A0A6H5JIM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM5_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.440e-37
Identity = 115/291 (39.52%), Postives = 154/291 (52.92%), Query Frame = 1 
Query:   91 KEGLQVPSLHGLDPASEAKKAVSSVREQVDK-----GSLSAQTSHDIFTLVQLSVDGRQ-----VQAG--SSEALAVASFRAALAPLALGLVNHFVKALQGRPPG--EDEC--------------------------KDAVIVTARHLSAMDTCIVA-SNTSFLLLAFNSLAKLLKQHWKTLLGGL-DAARTLHRLCGIYRDGLRQLGQALHPEE-------EEAGPGNPAAGGRNGLREWQPEHVQKFGKLLSTFGARLSTVVRYLGPECPAASVHQALLLLAEAAGQLY 816
            ++GL  PSL GLDPA  A+  VS     V       G +S  T  ++F L+QL +D RQ     V+AG  ++   A  +FR+ALAP ALGLV     ALQ R      D C                          +DAV++ A HL+AM+  +   +NT  LL+A N+L+KLLK +W  L+GG+ DA R L RLC IYRDGL QL  AL   +       EE   GN +AGG  G       H++KFGKLL+TFG R++ ++R+LGPEC      +A  L A+A   +Y
Sbjct:    6 RDGLACPSLRGLDPAKLARDLVSRSAASVASAGVKGGGISVATVDEVFALIQLGLDDRQPTPATVEAGITNNSPEAETAFRSALAPGALGLVPKLAAALQHRDRNLAADSCDGGXXXAESAAREQEQHPVSRSGRGQRDAVVLAAGHLTAMEQLVTRQNNTPALLMAHNALSKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLGQLDIALAQADAKNAASSEEPRSGNRSAGGGAG----DTAHLKKFGKLLATFGTRMACLLRHLGPECRPRKRREAFRLYAKATASVY 292
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BLAST of mRNA_S-ischiensis_contig10.1590.1 vs. uniprot
Match: D8LJB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.060e-31
Identity = 102/256 (39.84%), Postives = 134/256 (52.34%), Query Frame = 1 
Query:  184 GSLSAQTSHDIFTLVQLSVDGRQVQAGSSEA-------LAVASFRAALAPLALGLVNHFVKALQGRPP--GEDEC---------------------------KDAVIVTARHLSAMDTCIVA-SNTSFLLLAFNSLAKLLKQHWKTLLGGL-DAARTLHRLCGIYRDGLRQLGQALHPEE-------EEAGPGNPAAGGRNGLREWQPEHVQKFGKLLSTFGARLSTVVRYLGPECPAASVHQALLLLAEAAGQLY 816
            G +S  T  ++F LVQL +D RQ    ++EA        A  +FR+ALAP ALGLV     ALQ R      D C                           +DAV++ A HL+AM+  +   +NT  LL+A N+LAKLLK +W  L+GG+ DA R L RLC IYRDGL QL  AL   +       EE    N +AGG  G       H++KFGKLL+TFG R++ ++R+LGPECP      A  L A+A   +Y
Sbjct:   47 GGVSVATVDEVFALVQLGLDDRQPTPAAAEAGITHNSPEAEKAFRSALAPGALGLVPKLAAALQHRDGHLATDGCGGGGVGGAESAARDQEQQPVSRSGRGQRDAVVLAAGHLTAMEQLVTRQNNTPALLMAHNALAKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLDQLKIALAQADAKHAASGEEHSCVNRSAGGGAG----DTAHLKKFGKLLATFGTRMACLLRHLGPECPPRERRAAFRLYAKATASVY 298
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BLAST of mRNA_S-ischiensis_contig10.1590.1 vs. uniprot
Match: A0A835YJU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.000e-6
Identity = 56/189 (29.63%), Postives = 86/189 (45.50%), Query Frame = 1 
Query:   61 IIAEAGPPQWKEGLQVPSLHGLDPASEAKKAVSSVREQVDKGSLSAQTSHDIFTLVQLSVDGRQ-VQAGSSEALAVASFRAALAPLALGLVNHFVKAL-QGRPPGEDEC---KDAVIVTARHLSAMDTCIVASNTSFLLLAFNSLAKLLKQHWKTLL---------GGLDAARTLHRLCGIYRDGLRQL 585
            ++A   PP W +     S   L+ + +A++ +  V+  +    ++ Q   D+F+L+ L  D R  +   + +AL     R+ LA     L    V AL  G PP  +       A  V ARHL  ++     +NT  LL+A+ SLAKLLK+H  TL+         GGL     L RL      G+ +L
Sbjct:   10 LVAATQPPTWLDSPACTST-ALEISVDAQRCIDYVKHSLTASQITPQLCDDVFSLLALVADARCCLVTPAGQAL-----RSKLASEVPSLTKQLVTALASGAPPAAEAAFVRAAAAAVAARHLLGLEQHAAHANTVMLLIAYGSLAKLLKRHGATLMTEPWLCEGAGGL-----LARLAATVEGGVAEL 187
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIM5_9PHAE3.440e-3739.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJB2_ECTSI5.060e-3139.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJU1_9STRA6.000e-629.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2940780..2942670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size922
Cds size921
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1590.1prot_S-ischiensis_contig10.1590.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2940780..2942670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.0095892-CDS-S-ischiensis_contig10:2940779..29412821622815537.0095892-CDS-S-ischiensis_contig10:2940779..2941282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2940780..2941282 -
1695739755.71396-CDS-S-ischiensis_contig10:2940779..29412821695739755.71396-CDS-S-ischiensis_contig10:2940779..2941282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2940780..2941282 -
1622815537.028296-CDS-S-ischiensis_contig10:2941868..29419741622815537.028296-CDS-S-ischiensis_contig10:2941868..2941974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2941869..2941974 -
1695739755.7256327-CDS-S-ischiensis_contig10:2941868..29419741695739755.7256327-CDS-S-ischiensis_contig10:2941868..2941974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2941869..2941974 -
1622815537.0451498-CDS-S-ischiensis_contig10:2942193..29424331622815537.0451498-CDS-S-ischiensis_contig10:2942193..2942433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2942194..2942433 -
1695739755.733784-CDS-S-ischiensis_contig10:2942193..29424331695739755.733784-CDS-S-ischiensis_contig10:2942193..2942433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2942194..2942433 -
1622815537.0582404-CDS-S-ischiensis_contig10:2942598..29426701622815537.0582404-CDS-S-ischiensis_contig10:2942598..2942670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2942599..2942670 -
1695739755.7456336-CDS-S-ischiensis_contig10:2942598..29426701695739755.7456336-CDS-S-ischiensis_contig10:2942598..2942670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2942599..2942670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1590.1

>prot_S-ischiensis_contig10.1590.1 ID=prot_S-ischiensis_contig10.1590.1|Name=mRNA_S-ischiensis_contig10.1590.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=307bp
RERTLGACRARLWAAMADRRIIAEAGPPQWKEGLQVPSLHGLDPASEAKK
AVSSVREQVDKGSLSAQTSHDIFTLVQLSVDGRQVQAGSSEALAVASFRA
ALAPLALGLVNHFVKALQGRPPGEDECKDAVIVTARHLSAMDTCIVASNT
SFLLLAFNSLAKLLKQHWKTLLGGLDAARTLHRLCGIYRDGLRQLGQALH
PEEEEAGPGNPAAGGRNGLREWQPEHVQKFGKLLSTFGARLSTVVRYLGP
ECPAASVHQALLLLAEAAGQLYAATAGGREGAGGGSSHGGRSDCGGGGGT
GSLAQDG
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mRNA from alignment at S-ischiensis_contig10:2940780..2942670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1590.1 ID=mRNA_S-ischiensis_contig10.1590.1|Name=mRNA_S-ischiensis_contig10.1590.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1891bp|location=Sequence derived from alignment at S-ischiensis_contig10:2940780..2942670- (Schizocladia ischiensis KU_0333)
CGCGAACGTACCCTGGGAGCTTGCCGGGCACGGCTGTGGGCGGCGATGGC
TGATCGGAGGATCATCGCCGAGGTGAGAACGCCACAGCGCGTCCGCCAGG
TCCCTGTTACCTCCGTTTGCTGCGTCTGCCACTCTGTCAACAATGTCCGG
GGTCGTTCAAGGCGGAGCCGGTTGGTGCTGGCGTTGCCCCAACTTGGAAA
ACTCTGAACGCCCCATGATTTCCGTGCCGTGCTGCAGGCTGGGCCCCCGC
AGTGGAAGGAGGGCCTTCAGGTTCCATCGCTGCATGGACTTGACCCGGCC
TCGGAAGCAAAAAAGGCAGTGTCGAGCGTCCGCGAACAGGTGGACAAGGG
CTCTTTGTCAGCCCAAACCAGCCACGACATTTTCACGCTCGTGCAGCTCT
CGGTAGACGGGCGGCAAGTACAAGCTGGCTCTTCGGAGGCGCTGGCGGTC
GCATCTTTTCGTGCGGCACTGGCCCCGGTGAGTTTGTTTTTGACCGAGCA
GTAGCTCGCAAATGTGGGTCAGGTTTTCATGCTCCCCATCGCGCGTACTA
GCAGGTGCGATTGAACGAGAGCTTGCCGGCGGGCCCGGTGAGGTTGGGGC
AGAGAGGTGCAGTAGGTGGAACCTGGTCCTTCGTATACCATCGTCTGCCA
AGCGTTAATACCCGGACATCCGCCATCTCTGGTTGCCCCACAACAGCTTG
CGCTCGGGCTGGTGAACCATTTTGTCAAGGCGCTACAGGGGCGGCCGCCC
GGGGAGGACGAGTGCAAGGATGCAGTCATCGTCACTGCTCGGCACCTCAG
CGGTGGGTGGACGGGCGGGCTGGTGGGTGGGTGGGTGGGTGGGTGGGTGG
TTGATTGGGTGGGCGAATTGGTCACGTGAAGTGGGCCGATCGATGGCATG
TGGGCCTGCGGTTGTCGGGGCCATCACGCTACCGCGTCCAAAGGCGTGCT
CAAGTGTCCCTGAGGGAGGCACACATCCATGGGCAGGGCGCTCGGCGGCC
CGCGGGCAGAGCAGGTTGCACGCACTCTCAGTATGTGACGGCGCCAGTTT
TCCCGCAACGCTTCGAGCTGCCCGCCTCTACAGTAGGTACCCGTACAAAG
TCGATCGGAACATGGGGCAGGTTTTGCTGGACATACACGCCCCCAACCAT
GTGCGCGGATTGGCCTGGTGACGTGGGACTCGGCACCCGCATGCCTTCCA
TGCTTGGGCGGCCTGTCCACAGTGGCAGCATACGGCGGTCCGCCCGCGGG
CCCGGCCCAGCCAAGCCGGCCACGCGGCCATCCCACGCCTCCCCCCCCCC
CCCTTTTCCCCCTCCCCCCCCCCCCCCTCCCCTCCCCTCCCCTCCCCTCC
CCGGCCTGGTGCACGCCACCGTCGGCTCTCCCCCCCAGCGATGGACACGT
GCATCGTCGCCTCCAACACGAGCTTCCTGCTGCTGGCCTTCAACAGCCTG
GCCAAGCTCCTCAAGCAGCACTGGAAGACCCTCCTGGGGGGGCTCGATGC
CGCCCGCACGCTCCACCGCCTGTGCGGCATCTACCGGGACGGCTTGCGGC
AGCTTGGGCAGGCGCTCCACCCGGAGGAGGAGGAGGCGGGCCCGGGCAAC
CCGGCGGCTGGCGGCCGCAACGGACTTCGGGAATGGCAGCCCGAACACGT
CCAGAAGTTCGGGAAACTCTTGTCCACGTTCGGGGCCCGCCTGTCCACCG
TCGTGCGGTACCTGGGGCCCGAGTGCCCCGCGGCAAGCGTGCACCAGGCG
CTGCTGCTTCTCGCGGAGGCCGCAGGCCAGCTGTACGCCGCCACTGCCGG
GGGGCGGGAGGGCGCCGGAGGCGGCAGCAGCCACGGGGGCAGAAGCGACT
GCGGCGGCGGCGGCGGCACGGGCTCACTGGCACAGGATGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2940780..2942670-

>mRNA_S-ischiensis_contig10.1590.1 ID=mRNA_S-ischiensis_contig10.1590.1|Name=mRNA_S-ischiensis_contig10.1590.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1842bp|location=Sequence derived from alignment at S-ischiensis_contig10:2940780..2942670- (Schizocladia ischiensis KU_0333)
CGCGAACGTACCCTGGGAGCTTGCCGGGCACGGCTGTGGGCGGCGATGGC
TGATCGGAGGATCATCGCCGAGCGCGAACGTACCCTGGGAGCTTGCCGGG
CACGGCTGTGGGCGGCGATGGCTGATCGGAGGATCATCGCCGAGGCTGGG
CCCCCGCAGTGGAAGGAGGGCCTTCAGGTTCCATCGCTGCATGGACTTGA
CCCGGCCTCGGAAGCAAAAAAGGCAGTGTCGAGCGTCCGCGAACAGGTGG
ACAAGGGCTCTTTGTCAGCCCAAACCAGCCACGACATTTTCACGCTCGTG
CAGCTCTCGGTAGACGGGCGGCAAGTACAAGCTGGCTCTTCGGAGGCGCT
GGCGGTCGCATCTTTTCGTGCGGCACTGGCCCCGGCTGGGCCCCCGCAGT
GGAAGGAGGGCCTTCAGGTTCCATCGCTGCATGGACTTGACCCGGCCTCG
GAAGCAAAAAAGGCAGTGTCGAGCGTCCGCGAACAGGTGGACAAGGGCTC
TTTGTCAGCCCAAACCAGCCACGACATTTTCACGCTCGTGCAGCTCTCGG
TAGACGGGCGGCAAGTACAAGCTGGCTCTTCGGAGGCGCTGGCGGTCGCA
TCTTTTCGTGCGGCACTGGCCCCGCTTGCGCTCGGGCTGGTGAACCATTT
TGTCAAGGCGCTACAGGGGCGGCCGCCCGGGGAGGACGAGTGCAAGGATG
CAGTCATCGTCACTGCTCGGCACCTCAGCGCTTGCGCTCGGGCTGGTGAA
CCATTTTGTCAAGGCGCTACAGGGGCGGCCGCCCGGGGAGGACGAGTGCA
AGGATGCAGTCATCGTCACTGCTCGGCACCTCAGCGCGATGGACACGTGC
ATCGTCGCCTCCAACACGAGCTTCCTGCTGCTGGCCTTCAACAGCCTGGC
CAAGCTCCTCAAGCAGCACTGGAAGACCCTCCTGGGGGGGCTCGATGCCG
CCCGCACGCTCCACCGCCTGTGCGGCATCTACCGGGACGGCTTGCGGCAG
CTTGGGCAGGCGCTCCACCCGGAGGAGGAGGAGGCGGGCCCGGGCAACCC
GGCGGCTGGCGGCCGCAACGGACTTCGGGAATGGCAGCCCGAACACGTCC
AGAAGTTCGGGAAACTCTTGTCCACGTTCGGGGCCCGCCTGTCCACCGTC
GTGCGGTACCTGGGGCCCGAGTGCCCCGCGGCAAGCGTGCACCAGGCGCT
GCTGCTTCTCGCGGAGGCCGCAGGCCAGCTGTACGCCGCCACTGCCGGGG
GGCGGGAGGGCGCCGGAGGCGGCAGCAGCCACGGGGGCAGAAGCGACTGC
GGCGGCGGCGGCGGCACGGGCTCACTGGCACAGGATGGCCGATGGACACG
TGCATCGTCGCCTCCAACACGAGCTTCCTGCTGCTGGCCTTCAACAGCCT
GGCCAAGCTCCTCAAGCAGCACTGGAAGACCCTCCTGGGGGGGCTCGATG
CCGCCCGCACGCTCCACCGCCTGTGCGGCATCTACCGGGACGGCTTGCGG
CAGCTTGGGCAGGCGCTCCACCCGGAGGAGGAGGAGGCGGGCCCGGGCAA
CCCGGCGGCTGGCGGCCGCAACGGACTTCGGGAATGGCAGCCCGAACACG
TCCAGAAGTTCGGGAAACTCTTGTCCACGTTCGGGGCCCGCCTGTCCACC
GTCGTGCGGTACCTGGGGCCCGAGTGCCCCGCGGCAAGCGTGCACCAGGC
GCTGCTGCTTCTCGCGGAGGCCGCAGGCCAGCTGTACGCCGCCACTGCCG
GGGGGCGGGAGGGCGCCGGAGGCGGCAGCAGCCACGGGGGCAGAAGCGAC
TGCGGCGGCGGCGGCGGCACGGGCTCACTGGCACAGGATGGC
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