mRNA_S-ischiensis_contig10.1498.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1498.1
Unique NamemRNA_S-ischiensis_contig10.1498.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.830e-22
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = 1 
Query:   19 EELAEHVLQALSKVGTNSFAISSVRRVAAREGPAVSQAGFGGRRQQRVDRLEHACFGVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            E +A  +   L KV TN+F ISS+R   +R G               V  L+HA   VGLY  A+M++HSCRPNAL  F+G  + +V TR + +GE +T+SYGPLAS++ S  ER+  L  AYFF C C AC
Sbjct:  358 ELVAAELATTLVKVSTNAFTISSLRCSDSRAG-------------HNVRPLKHATVAVGLYLVASMINHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASKMSSTSERQAYLSRAYFFRCECIAC 476
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: D7FV15_ECTSI (Set and mynd domain containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV15_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.810e-22
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1 
Query:   19 EELAEHVLQALSKVGTNSFAISSVRRVAAREGPAVSQAGFGGRRQQRVDRLEHACFGVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            E +A  +   L KV TN+F +SS+R     + PA             V  L+HA   VGLY  A+M++HSCRPNAL  F+G  + +V TR + +GE +T+SYGPLAS++ S  ER+  L  AYFF C C AC
Sbjct:  128 ELVAAELATTLVKVSTNAFTVSSLR---CSDPPAG----------HNVRPLKHATVAVGLYLVASMMNHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASKISSASERQAYLSRAYFFRCECIAC 246
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A8H7VUD7_9FUNG (SET domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VUD7_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-10
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:   19 EELAEHVLQALSKVGTNSFAISSVRRVAAREGPAVSQAGFGGRRQQRVDRLEHACFGVGLYATAAMLSHSCRPNALVRF--NGKRLEL---VTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            E+  + ++  LS++  NSFAI     VA      VS+              E    G  +Y TA+  +H C P ALV F  +G   +L   VT   + +G+ +T+SYGPLA++  +++ER++ LKE YFF+C+C +C
Sbjct:  184 EDTIDSLICILSQIRCNSFAIKQAASVAVDSSYVVSR--------------ESIHLGQAVYLTASRFNHDCDPTALVIFGSDGNPCQLQVQVTKGAIVKGQSVTISYGPLATK-HAKEERKKKLKEDYFFNCQCSSC 305
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A433DLW2_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DLW2_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 2.110e-10
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  160 VDRLEHACFGVGLYATAAMLSHSCRPNALVRFNGKRLE-----------LVTTRRVPQ-GEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEACRE 420
            ++       G G+Y  A++L+H+C PNA+V F  ++ E           +V TR V + GE + +SYGP   R+ + +ERRR+L+E Y FDC CEACRE
Sbjct:  284 MEERREVVLGTGVYLGASLLNHACWPNAMVVFGTRKEEGRVDIDPRELVVVMTREVGRVGEPICMSYGPQVGRMDA-EERRRVLREKYLFDCGCEACRE 381
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A7I8L004_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L004_SPIIN)

HSP 1 Score: 71.2 bits (173), Expect = 6.210e-10
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:   49 LSKVGTNSFAISSVRRVAAREGPAVSQAGFGGRRQQRVDRLEHACFGVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            +S++  NS AI  +R +    G    +             +E    G  +Y+T  + +HSC+PN    F  +RL L +T  VP G  L +SYGP   +    +ERRRLLK+ YFF C+C  C
Sbjct:  418 MSQMKVNSMAIVHMRSLQQARGTYSIEKAL-------TSNIEQLRVGQAIYSTGRLFNHSCQPNLHAYFLSRRLLLRSTEPVPAGSPLELSYGPQLGQW-GLEERRRLLKDQYFFTCQCSGC 531
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A0V0Q8E6_PSEPJ (SET domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q8E6_PSEPJ)

HSP 1 Score: 68.6 bits (166), Expect = 1.470e-9
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  190 VGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            +G+Y TA +L+HSC+PN +  FN +++ + T R +  GE LTVSY  +     S+QER++   + Y F C+CE C
Sbjct:   22 IGIYNTAHLLNHSCKPNCIQIFNNRQIYIKTLRPIKAGEQLTVSYFDVCR---SKQERKKYALQQYMFKCQCERC 93
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: UPI001BB243E4 (histone-lysine N-methyltransferase SMYD3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB243E4)

HSP 1 Score: 69.3 bits (168), Expect = 1.900e-9
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  190 VGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEAC 414
            VG+Y  A+ML+HSC PN LV F+G++L+L T + V +GE  T+SY  +   V  RQ     L+E Y F C C  C
Sbjct:  203 VGIYLRASMLNHSCNPNCLVVFDGRKLQLRTVKDVKEGEECTISYVDIMDPVKERQSE---LEERYHFTCNCVKC 274
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: Q4RPV1_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RPV1_TETNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.170e-9
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  187 GVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEACR 417
            GVGL+    +++H C PN  V  N  ++EL +  ++ +GE LTV+Y    +     +ERRRLLK  YFFDC+CE CR
Sbjct:   95 GVGLFPNLCLVNHDCWPNCTVILNHGKIELRSLGKIAEGEELTVAYVDFLN---LSEERRRLLKTQYFFDCQCEHCR 168
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: H3C8T2_TETNG (SET and MYND domain containing 1b n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C8T2_TETNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.440e-9
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  187 GVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEACR 417
            GVGL+    +++H C PN  V  N  ++EL +  ++ +GE LTV+Y    +     +ERRRLLK  YFFDC+CE CR
Sbjct:  175 GVGLFPNLCLVNHDCWPNCTVILNHGKIELRSLGKIAEGEELTVAYVDFLN---LSEERRRLLKTQYFFDCQCEHCR 248
[Close]
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Match: A0A671UWK4_SPAAU (Histone-lysine N-methyltransferase SMYD1-like n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UWK4_SPAAU)

HSP 1 Score: 68.6 bits (166), Expect = 3.590e-9
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  187 GVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQGEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEACRE 420
            GVGL+    +++H C PN  V  N  ++EL +  ++ +GE LTVSY      +   +ER+RLLK  YFFDC CE CR+
Sbjct:  169 GVGLFPNLCLVNHDCWPNCTVILNHGKIELRSLGKIEEGEELTVSY---VDYLNLSEERQRLLKTQYFFDCTCEHCRD 243
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Y3_9PHAE2.830e-2244.70SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FV15_ECTSI9.810e-2243.94Set and mynd domain containing protein, putative n... [more]
A0A8H7VUD7_9FUNG1.120e-1034.31SET domain-containing protein n=1 Tax=Thamnidium e... [more]
A0A433DLW2_9FUNG2.110e-1040.40Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
A0A7I8L004_SPIIN6.210e-1034.43Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A0V0Q8E6_PSEPJ1.470e-941.33SET domain-containing protein n=1 Tax=Pseudocohnil... [more]
UPI001BB243E41.900e-945.33histone-lysine N-methyltransferase SMYD3-like n=1 ... [more]
Q4RPV1_TETNG2.170e-944.16(spotted green pufferfish) hypothetical protein n=... [more]
H3C8T2_TETNG2.440e-944.16SET and MYND domain containing 1b n=1 Tax=Tetraodo... [more]
A0A671UWK4_SPAAU3.590e-943.59Histone-lysine N-methyltransferase SMYD1-like n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2095005..2099998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D7FV15
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMYND zinc finger and SET domain protein
Ec32 orthologEc-14_003800.1
Exons3
Model size991
Cds size990
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1498.1prot_S-ischiensis_contig10.1498.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2095006..2099998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.3502712-CDS-S-ischiensis_contig10:2095005..20956531622815498.3502712-CDS-S-ischiensis_contig10:2095005..2095653Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2095006..2095653 -
1695739735.622055-CDS-S-ischiensis_contig10:2095005..20956531695739735.622055-CDS-S-ischiensis_contig10:2095005..2095653Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2095006..2095653 -
1622815498.3650835-CDS-S-ischiensis_contig10:2098783..20990681622815498.3650835-CDS-S-ischiensis_contig10:2098783..2099068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2098784..2099068 -
1695739735.636972-CDS-S-ischiensis_contig10:2098783..20990681695739735.636972-CDS-S-ischiensis_contig10:2098783..2099068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2098784..2099068 -
1622815498.3796825-CDS-S-ischiensis_contig10:2099941..20999981622815498.3796825-CDS-S-ischiensis_contig10:2099941..2099998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2099942..2099998 -
1695739735.6501484-CDS-S-ischiensis_contig10:2099941..20999981695739735.6501484-CDS-S-ischiensis_contig10:2099941..2099998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2099942..2099998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1498.1

>prot_S-ischiensis_contig10.1498.1 ID=prot_S-ischiensis_contig10.1498.1|Name=mRNA_S-ischiensis_contig10.1498.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=330bp
GERAGVEELAEHVLQALSKVGTNSFAISSVRRVAAREGPAVSQAGFGGRR
QQRVDRLEHACFGVGLYATAAMLSHSCRPNALVRFNGKRLELVTTRRVPQ
GEMLTVSYGPLASRVPSRQERRRLLKEAYFFDCRCEACREEPVHPSPTPA
APPPQQGPTFARAARGGAGAGGGADAGGAAAGAPGDRGPGKSTGRRAVPP
EADGEEPRAQRRGVRTDLACLGDGCHGALQAHLSAPSGSGASYMLLWCPL
CDARLDGARARDLHREWQRDAEAWRRAQEMLALVEGEGRPPGAGGGSLSP
ATGQDDSGGGGGSGGGGSNGHGRTRAAAKT
back to top

mRNA from alignment at S-ischiensis_contig10:2095005..2099998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1498.1 ID=mRNA_S-ischiensis_contig10.1498.1|Name=mRNA_S-ischiensis_contig10.1498.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4994bp|location=Sequence derived from alignment at S-ischiensis_contig10:2095005..2099998- (Schizocladia ischiensis KU_0333)
GGAGAAAGGGCGGGTGTGGAGGAGCTCGCCGAGCATGTGCTGCAAGCTTT
GTCCAAAGTGAGGCCTTGAGTCGTGCAGGAGCAGACCGGCGCCGTAGCAC
GAATTGAGACAGTGATCTGGCTGTAGGTACAGCACTAGGCAGGATATCAA
AGTACTAGTAGAGTACACTCTTTGCCTGTCTACTCCAAGTGCTCCAAGTA
CGAGTACCTCTAAGGGGACAGATGAAATGTCCGTTGAGTTAGAGTGGTCA
TTGGGGTGTGAATGAGGTCCTGTTGGGCGATTGTAAGATGAGCTCTGGCA
ATTCAGAATGTCCGCAATAGGCCCGTGATGTAGCGGTCAAGGACGACCGT
TACGACCAACGGAAAGTTGAACCACTGCGCAGGACGGTATTGGCCAATCA
GCGTAGGATGGATAATTTCAAGGAAGCAACTCCGATTACCAAAGTCGGCT
ACACGCTCAAGCTCGACATGGGACTTACAGTAGTTGTATGTAAACGATTG
GATGTACTTCGAAGTATTAAATTTTCTCCGATTCGCTGATGCGCTTCCAA
GTCATGAATCGATGTGTTCCGAGGACTGGTTAACTTTTAGCACCCGCGCA
ATTTCAGCTTCTAGTCGAACCAGCGCCGCACTGAGCTTTCAAAGCGATCA
AGCACAGACTATTGGAAGCTTCGGGGTTTCCATGTCAGCTCCAGCTCTCG
AAACCACATCCTTTGTCCTCATCCCTGCTTGTGGTCACGGGCACGACCCC
ACCCGAGAGGCCCCAGGCACTAGGGCCGAGAGCGCTTGTGACCGGTCGTG
ACTCGACTGAGTGACTGCACAGGACCCGCTCCCACCCCATCCCCCTCCCA
TTGCCGCCGCCGCCACTGCCGCTGCCACCGCCGCCACTGCTGCCGCCGCC
ACCACCACCCTGTCTGCCCGGGTGCCCCAGGTGGGCACAAACAGCTTTGC
CATATCGTCAGTGCGCCGTGTTGCGGCGAGAGAAGGCCCCGCTGTGTCCC
AGGCGGGCTTTGGGGGGAGAAGGCAGCAGCGGGTGGACCGCCTGGAGCAC
GCGTGCTTCGGGGTCGGCCTGTACGCCACGGCGGCCATGCTCAGCCATTC
CTGCCGCCCAAATGCCCTCGTGCGGTTCAATGGGAAGAGGCTGGAGTTGG
TGACCACGCGGCGGGTCCCCCAGGGGGAGATGCTGACTGTCTCGTACGGC
CCACTGGCGTCCAGGGTGAGCGTTGCCTGCGTTGTAGTTGTGGCAGTGGT
TGTTGCCATTTGCTCCCGTTGTTGTTGTTGTTGTTGTTGTTGTCATCGTT
GTTGTCGGTATATCCGAGTATTCCCACAGTGTGCTGCAGAGACCAAGGTG
TTGTTCTTTGCTTCTATTTGCTTGCTTGCCTTGCTACTTCCACTGCAGTA
CTGTGGTTTGGTGAATATTTTGCGACCGTCTCCATCACGACCATGGCTAC
AGTCGCCGCTGCCGATTTTGTCACCGTGAGGGTGTCGTGTCGCCACGACA
CACCCTCGGTGCAGCATGCGCCTCGCAGCAGCGAGTGGTTTTCTGGAGAG
TGATCATTATTGCTACAGCTGCATGCACCTAGGACGGCGTGTGCCTTTTC
TAGAAGCTTAAAGCGCGGCTACAAAACGCCTCCGCATATCTACCAAAACT
CGCCGTAACTGCTCCGAAGTACTCGAGTCTGTCCCAAACAAACAGTACCA
TGCACTGCACTGTAACACACTGTGCTCCTCTCCTATGAGCCTATAATCGA
CCTACTGTAATGTCGAGTCGCTCAGCCACAAAGCTTGACACGCCCCCTCG
ACGAGATATCTACTGTAGTCGATTCTGCTACATATCCCTGGCACAACACA
CCCCAATGTCACGCATAAGCGCCCCCTCGGCCACGGCACATTCAGAGGGC
AAGACTAGTCCGCGGCGCCCGCGGCGACTGCCTGGCTGCGCAGCCATCCC
AAGTGTCATGCTCCTCCTCCTCCTCGTGCGAGTGCGCAAAAGGCTTGCCG
GACTTGGCAGACTTGGCCGCGGACACCAGCTTAAGCAAGTCCTTGAGTGT
CACATCGTCCGCGGGCGCTTTGCTAGCACGGTTACTGTCCTGCGTCTCTT
GCTGCCTACCGGACTGGCACTGCGAGGCTTTATGTCCCGACTTCCTGCAC
AAGTAGCAGACTCCCGGAAACGGCTTAGTGCCTTGCCTAGCATAGCCGCC
TTGCTGAGTACGGCAGGTTTCGTCCGTGTGGGACGAGGTCTTGTGTAGTG
AGCATCTCTGTACGCTTCCTGTCAAGACGTGCTCATCAAACCCCATCTTA
CACACACTTCTATCGCCGGTCCGACCGTGATGAGTGAGTATTATCTCCTT
GGCTCGCTGGTAGTTCACCTCCTTACTCGACTCGATGAACATGCGGACGC
TCTCGAAGTTCTCCTCTGGCAATGCCAAAAGAAGAGTGCCCTGCATATCT
CATCGGAAACAGGCAAGCCCATGTCACTTAAGCTGCCCGCGCATGCTCTC
CATTTCTGCTATCTCTGACTCCAACTCCTCCTTAGCCGCAAACTTACTAG
AAAGCAGTTGTAGTAGCAGTCCGACCTTGCGGTTGGACTGCCCGCGCATG
CTCTCCATTTCTGCTATCTCTGACTCCAACTCCTCCTTAGCCGCAAACTT
GCTAGAAAGCAGTTGTAGCAGCAGTCCGACCTTGCGGTTGGATGCCTTCC
CCTCATGGTGCTCAGATAACTTGGCCCAAGCCGCTAGGCCGTCCCTGTTC
CCAGCCAGTGCAATGACATCCAAACTTACGTCATCTAACGCCAGTACCAG
CTCGTCGTAGACTAGACGGTTGCTAGCTCGCCACTCCTCCACAGCCTCGG
TCGTATCGCGTGCCCGAGGTCTCTTGTCCTCGCCGCCGTCCAGGATGTAT
CCCACACCCCGCTTGTTCAGGACCGCCTTGAAACGTGTCTTCCACCGCCT
GTAGTTGCCCTTCTTCCCGGAGTAGACGATGGTCTGCACACTGCTGAACA
CCTTCGTCTGCGTGGAGCTCATGATGCTCCCAGCTCCTGGTGTCGCGCTG
TGATGGTCGCGTCCACCCTTGCCTTGTCGCCGTGCCTTGGATACGCCCCG
GAGGATGCCCGATCCGTACCGGCCCTACAGCGTAGCGGTGCGGTGTGATG
ACCGCCCCGCGTCTCCCTTGGGGGTTCCCCAGCGTAATAGCCCAGCGTGA
TAGCCGCCCCCTTGTGCGTGGCACTCTTGCCCACGGCTTCATGCACGGAT
CTCTCGTCCCCGGCTTTTGCACGGGCACCTCACCCGCGGCTTCGTGACGA
CCTGCTCGAGGCCGGAAACTGACTGTCGACCGTTCCCGCCGGACTTCCCC
AACCACTACGTCACAGGGCTCATAACCTGTCACCGTGAGGGTGTCGTGTC
GCCACGACACACCCTCGGCACAGCATGCGCCTTGCAGCAGCGAGTGGTTT
TCTGGAGAGTGATCATTATTGTTGCGGCTGCATGCACCTAGGACGGCGTG
TGCCTTTTCTAGAAGCTTAAAGCACGGCTACAAAACGCCTCCGCGTATCT
ACCAAAACTCGCCGTAACTGCTCTGAAGTACTCGAGTCTATCCCAAACAA
ACAGCACCATGCACTGCACTGTAACACACTGTGCTCCTCTCCTATGAGCC
TATAATCGACCGACTGTAATGTCGAGTCGCTCAGCCACAAAGCTTGACAG
ATTTCACTTTAGCCACCGCCCCCGACGACGTCCAGCCGCTGGTGCCCAAG
CCACGGGCAGTACAGCGCACTGGACGGCAGTCACACTGACGTTTCACGCA
CAGTTGTTCGACAGTGATCAGTGAAGGGCGAGGGGTGGAAGCATTTCCCG
GGGTGGCTCTGACCGCTGGCCACTACTTGTGCCCTCTGCACGTGTGTTGC
ATTGCCCGAGCCACATGCTTTATCTGCGGCCCGCCTGCCCCCTTGCCACC
CTGGGCCCTGTCTGCCCACTCGTGACTGCCTGCCAATCTTGTGTACCCCG
ACCCTGTCGTGGCGTATGTGAAGGTGTCCCAAAGCGAGTACAGTTATGTA
CTGTACTTCTTATATACTGTACTGTGCTTCTAAGTACGGTGCAGCATATA
CTGTACTCGCGTACTGTAGAAGAGGAGCTTCAGGGGGGCTGCCCCCTCTC
CCCTGCTTGGGGATTGTTTTTATCAGCGTGTACTCGAGCATAGTGCCTAC
ATGCTCTGTGCACGCAGCACTTACCTAGGCACACCCCCCGGGCATCTGAC
GAGGACCGCCAGAAGGAAGAGCCCAACCCAAATCACCACGAACGCGCTTG
GCGTCCCCAATCGCCGGCCGCACGCCCCGACCCGTGCGTCTGCAGGTGCC
CTCACGGCAGGAGCGCAGGAGGCTGCTGAAGGAAGCCTACTTCTTTGACT
GCCGGTGCGAGGCGTGCAGAGAGGAGCCCGTGCACCCATCACCGACGCCA
GCGGCGCCGCCGCCACAGCAGGGCCCCACATTCGCTCGCGCTGCACGCGG
CGGGGCGGGCGCGGGGGGTGGGGCAGATGCGGGAGGAGCAGCGGCGGGGG
CACCCGGCGACCGGGGCCCCGGGAAAAGCACGGGCCGCCGCGCTGTGCCG
CCCGAGGCCGACGGCGAGGAGCCCAGGGCTCAACGAAGGGGGGTGCGCAC
TGACCTGGCTTGCCTCGGGGACGGCTGCCACGGGGCGCTGCAGGCCCACC
TGTCGGCTCCAAGCGGCAGCGGCGCCTCGTACATGCTGTTGTGGTGCCCG
CTGTGCGACGCCCGGCTCGACGGCGCACGGGCCCGGGACCTCCACCGGGA
GTGGCAGCGGGACGCCGAGGCGTGGCGCCGGGCACAGGAGATGCTGGCGC
TCGTCGAGGGAGAGGGGCGGCCCCCGGGCGCCGGGGGCGGGAGCTTGTCG
CCCGCGACAGGTCAGGATGACAGCGGCGGCGGCGGCGGCAGCGGTGGCGG
CGGCAGCAACGGGCATGGCCGCACCCGGGCGGCCGCCAAGACGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:2095005..2099998-

>mRNA_S-ischiensis_contig10.1498.1 ID=mRNA_S-ischiensis_contig10.1498.1|Name=mRNA_S-ischiensis_contig10.1498.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1980bp|location=Sequence derived from alignment at S-ischiensis_contig10:2095005..2099998- (Schizocladia ischiensis KU_0333)
GGAGAAAGGGCGGGTGTGGAGGAGCTCGCCGAGCATGTGCTGCAAGCTTT
GTCCAAAGGAGAAAGGGCGGGTGTGGAGGAGCTCGCCGAGCATGTGCTGC
AAGCTTTGTCCAAAGTGGGCACAAACAGCTTTGCCATATCGTCAGTGCGC
CGTGTTGCGGCGAGAGAAGGCCCCGCTGTGTCCCAGGCGGGCTTTGGGGG
GAGAAGGCAGCAGCGGGTGGACCGCCTGGAGCACGCGTGCTTCGGGGTCG
GCCTGTACGCCACGGCGGCCATGCTCAGCCATTCCTGCCGCCCAAATGCC
CTCGTGCGGTTCAATGGGAAGAGGCTGGAGTTGGTGACCACGCGGCGGGT
CCCCCAGGGGGAGATGCTGACTGTCTCGTACGGCCCACTGGCGTCCAGGG
TGGGCACAAACAGCTTTGCCATATCGTCAGTGCGCCGTGTTGCGGCGAGA
GAAGGCCCCGCTGTGTCCCAGGCGGGCTTTGGGGGGAGAAGGCAGCAGCG
GGTGGACCGCCTGGAGCACGCGTGCTTCGGGGTCGGCCTGTACGCCACGG
CGGCCATGCTCAGCCATTCCTGCCGCCCAAATGCCCTCGTGCGGTTCAAT
GGGAAGAGGCTGGAGTTGGTGACCACGCGGCGGGTCCCCCAGGGGGAGAT
GCTGACTGTCTCGTACGGCCCACTGGCGTCCAGGGTGCCCTCACGGCAGG
AGCGCAGGAGGCTGCTGAAGGAAGCCTACTTCTTTGACTGCCGGTGCGAG
GCGTGCAGAGAGGAGCCCGTGCACCCATCACCGACGCCAGCGGCGCCGCC
GCCACAGCAGGGCCCCACATTCGCTCGCGCTGCACGCGGCGGGGCGGGCG
CGGGGGGTGGGGCAGATGCGGGAGGAGCAGCGGCGGGGGCACCCGGCGAC
CGGGGCCCCGGGAAAAGCACGGGCCGCCGCGCTGTGCCGCCCGAGGCCGA
CGGCGAGGAGCCCAGGGCTCAACGAAGGGGGGTGCGCACTGACCTGGCTT
GCCTCGGGGACGGCTGCCACGGGGCGCTGCAGGCCCACCTGTCGGCTCCA
AGCGGCAGCGGCGCCTCGTACATGCTGTTGTGGTGCCCGCTGTGCGACGC
CCGGCTCGACGGCGCACGGGCCCGGGACCTCCACCGGGAGTGGCAGCGGG
ACGCCGAGGCGTGGCGCCGGGCACAGGAGATGCTGGCGCTCGTCGAGGGA
GAGGGGCGGCCCCCGGGCGCCGGGGGCGGGAGCTTGTCGCCCGCGACAGG
TCAGGATGACAGCGGCGGCGGCGGCGGCAGCGGTGGCGGCGGCAGCAACG
GGCATGGCCGCACCCGGGCGGCCGCCAAGACGGTGCCCTCACGGCAGGAG
CGCAGGAGGCTGCTGAAGGAAGCCTACTTCTTTGACTGCCGGTGCGAGGC
GTGCAGAGAGGAGCCCGTGCACCCATCACCGACGCCAGCGGCGCCGCCGC
CACAGCAGGGCCCCACATTCGCTCGCGCTGCACGCGGCGGGGCGGGCGCG
GGGGGTGGGGCAGATGCGGGAGGAGCAGCGGCGGGGGCACCCGGCGACCG
GGGCCCCGGGAAAAGCACGGGCCGCCGCGCTGTGCCGCCCGAGGCCGACG
GCGAGGAGCCCAGGGCTCAACGAAGGGGGGTGCGCACTGACCTGGCTTGC
CTCGGGGACGGCTGCCACGGGGCGCTGCAGGCCCACCTGTCGGCTCCAAG
CGGCAGCGGCGCCTCGTACATGCTGTTGTGGTGCCCGCTGTGCGACGCCC
GGCTCGACGGCGCACGGGCCCGGGACCTCCACCGGGAGTGGCAGCGGGAC
GCCGAGGCGTGGCGCCGGGCACAGGAGATGCTGGCGCTCGTCGAGGGAGA
GGGGCGGCCCCCGGGCGCCGGGGGCGGGAGCTTGTCGCCCGCGACAGGTC
AGGATGACAGCGGCGGCGGCGGCGGCAGCGGTGGCGGCGGCAGCAACGGG
CATGGCCGCACCCGGGCGGCCGCCAAGACG
back to top