|
|
Homology
BLAST of mRNA_S-ischiensis_contig10.1478.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.150e-18 Identity = 73/168 (43.45%), Postives = 93/168 (55.36%), Query Frame = 1
Query: 22 VEPVPSPLGVPGAVACPTPGQLYKAMVGPD-RAWLDAVQVRLVDMLQAEVLGVLGTAGRAGAAVSTRPNSLTWPEFARQALCSLLQLWDQNEDPLQDMIGLGRGSGAGPDTDVAGAGMWNPATQALAFARVGGGSLSESAIARMAGWMAGQHDPHAGARLMALLTPEA 522
+ PVPSPLG G A PT QLY A+ P+ R WLDA+QVRLVDM+Q +++ L AAV+TRPNSLTWPEFARQA+ +LL W + QD I G SGA + A A + L GGG + ++ W+ QHD GAR + +T A
Sbjct: 119 LRPVPSPLGPKGFKA-PTLPQLYSAVSSPEQRGWLDALQVRLVDMVQDQMVSSLD---EREAAVTTRPNSLTWPEFARQAVSALLLNWAE-----QDAI-FGDTSGAPSQSQAA---QGRAARKKLGK---GGGKIEPHHLSPACVWLDAQHDARHGARFIESITGNA 270
BLAST of mRNA_S-ischiensis_contig10.1478.1 vs. uniprot
Match: A0A6H5J6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B9_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 3.090e-6 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 22 VEPVPSPLGVPGAVACPTPGQLYKAMVGPD-RAWLDAVQVRLVDMLQAEVLGVLGTAGRAGAAVSTRPNSLTWPEFARQAL 261
+ PVPSPLG G A PT QLY A+ P+ R WLDA+QVRLVDM+Q +++ L AA +TRPNS AR+ L
Sbjct: 323 LRPVPSPLGPKGFKA-PTLPQLYAAVSSPEQRGWLDALQVRLVDMVQDQMVSSLD---EREAAATTRPNSAAQGRAARKKL 399
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 858 |
| Cds size | 858 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815528.449351-CDS-S-ischiensis_contig10:1970374..1970704 | 1622815528.449351-CDS-S-ischiensis_contig10:1970374..1970704 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1970375..1970704 - |
| 1695739750.1331637-CDS-S-ischiensis_contig10:1970374..1970704 | 1695739750.1331637-CDS-S-ischiensis_contig10:1970374..1970704 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1970375..1970704 - |
| 1622815528.4650114-CDS-S-ischiensis_contig10:1971441..1971663 | 1622815528.4650114-CDS-S-ischiensis_contig10:1971441..1971663 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1971442..1971663 - |
| 1695739750.1414287-CDS-S-ischiensis_contig10:1971441..1971663 | 1695739750.1414287-CDS-S-ischiensis_contig10:1971441..1971663 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1971442..1971663 - |
| 1622815528.4781182-CDS-S-ischiensis_contig10:1972055..1972128 | 1622815528.4781182-CDS-S-ischiensis_contig10:1972055..1972128 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1972056..1972128 - |
| 1695739750.1494975-CDS-S-ischiensis_contig10:1972055..1972128 | 1695739750.1494975-CDS-S-ischiensis_contig10:1972055..1972128 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1972056..1972128 - |
| 1622815528.4902868-CDS-S-ischiensis_contig10:1973059..1973157 | 1622815528.4902868-CDS-S-ischiensis_contig10:1973059..1973157 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1973060..1973157 - |
| 1695739750.1575599-CDS-S-ischiensis_contig10:1973059..1973157 | 1695739750.1575599-CDS-S-ischiensis_contig10:1973059..1973157 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1973060..1973157 - |
| 1622815528.5058985-CDS-S-ischiensis_contig10:1975794..1975929 | 1622815528.5058985-CDS-S-ischiensis_contig10:1975794..1975929 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1975795..1975929 - |
| 1695739750.1674953-CDS-S-ischiensis_contig10:1975794..1975929 | 1695739750.1674953-CDS-S-ischiensis_contig10:1975794..1975929 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1975795..1975929 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1478.1 >prot_S-ischiensis_contig10.1478.1 ID=prot_S-ischiensis_contig10.1478.1|Name=mRNA_S-ischiensis_contig10.1478.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=286bp
EGVGRNSVEPVPSPLGVPGAVACPTPGQLYKAMVGPDRAWLDAVQVRLVD
MLQAEVLGVLGTAGRAGAAVSTRPNSLTWPEFARQALCSLLQLWDQNEDP
LQDMIGLGRGSGAGPDTDVAGAGMWNPATQALAFARVGGGSLSESAIARM
AGWMAGQHDPHAGARLMALLTPEAFLEAQGPLSAAAAAGKKKKRGPGRPA
APEEPLVTVPWEASTDRAVLDAVQARLTRWRAENTRLVEEETRAVQAEVS
ARGRLKKEGNGVPSPGGGSSGRGGGASASSAGGGGG back to topmRNA from alignment at S-ischiensis_contig10:1970375..1975929- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig10.1478.1 ID=mRNA_S-ischiensis_contig10.1478.1|Name=mRNA_S-ischiensis_contig10.1478.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5555bp|location=Sequence derived from alignment at S-ischiensis_contig10:1970375..1975929- (Schizocladia ischiensis KU_0333)
GAGGGGGTGGGGAGGAACTCTGTAGAGCCGGTGCCCAGCCCCCTGGGCGT
GCCCGGCGCGGTTGCGTGCCCTACCCCGGGGCAGCTGTACAAGGCGATGG
TGGGGCCGGACCGTGCGTGGCTGGACGCTGTGCAGGTGAGCATTATGTAT
ATATATGAGTACTCACGTTGTGCTGGCCGTAGCCCCGAGACCATTGACCA
GCGGCTCGGTCAACAGCGAGCAGGACCCCTCCCTCCCCTGGCGCTACACG
GCCAGTCTGGGGCCAGGCGCGGTTTTCGAAATGAGGACGTCTGGTTCCTG
AAAGGAACTGCCACAACACAACTGGGTTAACAGCGACGGTCAGATACCTA
GTGGGGGGCACTTGTGTTTTGGCTGGCAGGTATAGTCCCTCGTGCGTTGG
GCCCGGGCAAGCAAGGGCATTCTTGCATCCTCAAACACCGTGTCGAGCCT
CAGATTAATGCCGTTGAGGGGCAGGGGTGGGGGTTGGTGGGGCTGGGCTC
TCGTGTGTGGCTCGGGCGAGGCTTGTGCCTCGAGTTGCCGTGCAGCTGCT
CTGGTGTGGGTGTGTGATCACCAGCTCGTGTGCTAGAGTTGCTGTCGGGA
AAAGGTTCGGTCTGCTTGTTTTACACATACTGTGGTCCGCCGGTGGCACA
GACACGGGGTAATAGCAACCCTGTCCGACACGAGTACAACCACACACACA
CATGTATATACTACTTCGAAGTGTATGCAGGTACGGGTGCTTGGAAGTGT
GCGGTATTCGGGCTCGAGCGCTCGCCGTGCTTCATGCTATACTCGTACGA
GTGCGGGAGTACGGCGATTGTGCTTGGCGATGCCTCACTGTAGCGGTTCC
AAGAATGTAGCACGTGCTCCAGAGCAGTCACGGCGGTGAGGTGTCGATGT
CATCGGCCAAGGGCTAGCAGGTCACGCGCTCTCAATGGTCTCTCCAGGGG
CTATAGCAAGCTCTGGTAGGTATGGGCACGCGCTGTATGAACTGTACCTG
TGCGGTGCTGCCAAGTGCTTCCGAAGTACTTCGAAGTACTTAACTCCTGT
GCTGCAGTGCTGTACGAACTGCAGTACGGTACTCATATCCCACGGTACGC
AGTAAGTACCGTGAGGTGCTACTGTACTGAGAGCCTCTCCAAGTGCCAGT
GATACTGTACTGTGGGTATTGTACTTGTACTCGAGCACCAGTGAGTGCAC
GAGCACTCTACTACGGTGAGTACCAGTATAGTCTACGTACAGTCCCGGAA
CTGGGAAATGGAACCGTTTGGCAAAAGCTCTATGTCTCGGCAACCAGTGG
GAGTTGACCCAAACCGCAAAGAAAGCACGAGAAGGCCTTGCGCTCAGGAA
CAAACTTCCTTTAAGTGGCATCCGCTACCTCGTCACCGATCACGAGCAAA
TTGCGATAAATACACTGCCAACAACCCAGGGCGCAGGTACCCCACATTTG
CATCACGTGAGAAAAATCTTCATCTCGGGAACGAGACCCGTTGTCAAAGG
AATTCTCTCCATTGCCGTAGGCACACTAATTTATCACCGTGGGAAAGCAT
GCGAATTTTCGGGCTATACCTGCTGTCGGGCGTTTTTGTGATAATACCCA
ACGTTTTGGGCGAGTTTCGCGATGGTGGAGGGTGCCTTCTCTCCCCCGCA
TTGAGGGCTTTCTCTGGATGCCTTCAGTTTCGGCCAATTCGCTGATGGTG
CGGAGTTGGTAATTTATACTTCGAAGTATTATCTAGGTTCCGGGCCTGTA
GGTACTACATTACTCTACGGTAGTGCTTGTACTGTACAGTACCGGAGTAC
TTTGTACAATACCGGTGTGTACTGTACTCATGCCGGACAGGGAGCTGCCC
CGTGAGATACGATGTGATGTGATATGATGTGATGCGCACTCTAAAACAGT
GTAGTTTGACATCATATCGCATCGAATCGCATCACTTTGTGTGTGTGCGT
GTGTGTGTACTGTACTCATGCGCTTCAGGGAGCTACCCGTCCCGCGCATG
CCATAGTACCGGTACCAGTGTTGCTCAAGTACCAGGAACACTGTGAGTAC
GGTCAGTGGTCTCGGGACTACGGCAAGCACAGCATGAGTGCGTGTATATG
CTCTCTATACTCGTTGAGCGCTCGTCTAGGCGAGTGGTCTACCGACGGCC
TTCGCGAGCCCAAGGTCGCGAGTTCGATTCCCTGTGCGGGGTCGATTTTT
CCGCGAAAAATGGACCCCTCCTGAAACACGCGCAAAATTGAAAAAAATCC
TGAGAGCCGTACCGGCTTGTCGGCCTCGGGCCCAATGGCAAAGCCGGGAC
CGGCGGGCGCCTGTCCGGTGAAAAACCGGAATGCTCTGGCCGGCGTTGTA
GGGCGCATGGCCAATGGCCGTAAGGCTACCCCGTATGGGGGCCAACCCCC
GGTCCAGCACGGAGTAACTAGCTCGAGTCGGTGGCAAGCACAGGATGGGA
TCCTCATCCGCCATGAGTACACACATACTCGTAGCGTGCAGTGCTACAAG
TACCAGTACCAGTAGAGTACTCGTACTACTGTAGGACCAGGTACCAGTGC
CAGTACTTGCACTGTACTCGAGTACAGCCGGATGTACTGTACAGTATCCG
CACCGTACAGTATCCGTACCGTGCAGCAGACGGTGTAGGAGTACCCAGTA
AGCACACGTCCAGCCGCACCCCCAGTGGAGCCCAAACCGAAACCCCGACC
CTGTCGTACAGTACCGTACAGCTTTCATACACGCCTGGCACCCCACGTGA
AACCCCGCTCCCGGTGCTGCAGGTGCGACTGGTGGACATGCTGCAGGCGG
AGGTTCTGGGGGTCCTGGGCACTGCGGGTCGGGCAGGCGCCGCGGTTTCC
ACACGGCCCAACTCGCTCACGTGAGAGAGGGGCTGAGAGGGACGGGCGGA
CAGAGGGAGGGAGGGAGGGAGGGAGAGGGAGAGCAAGATGCGAGGGGGGA
GGGAGGTGGACAGACAGAAAAGCTGGAGGGGGTGGACAGGGGAAGGGGGG
GGAGGCGGAGGGAAGGGGGAAGGAGAGGGAGGGGGCCGGAGGTGGGGGTG
GGGAGGGAGGGAGGGGGAGGTAGAAGGGGCTGGGGGGAGAGGGAGAGATA
CGGAGAGCAAGACAGAGGGGGGGAGGGAGGGAGGGAGAGGGAGGTGGACA
GGGGAGGGGGAAGGAGGGTGAGAGGGAGAAAGAGGGGAAGGGGGAGGGAG
GGAAGAGGGTTGGGGTGGGGGCGAGGGCGACCATGGAGAGAAGGGGGGAC
GGGGGTAGGCAGGCAGGCAGCGAGGGAGGGAGGGAGGGAGGGAGTGTGAG
ATGACCAGCAGACATGGGGAACAAATGGTGGAGATGGAGATGGAGATGGA
GGGGGTTGTCAGAGCAGAACTTGGCGTGCAAACTCTCAGTCAGGCGACAA
CAGTCTTGGAATTGTGTAAAGTGATGCTGTGCAACGGACAGTGGTATACT
TGGAAGTGGTGCGTAGTACTACCGTTGTGGGATTGGTTACTTCGTCTGCA
TTGTACGAGTAGTCCTTATGCTCTGCTTCGTACGTGCGTACCAGTACTAC
TACATAGCACAGTAGAGCACTACTGTACTGGAGTACTGTAGCAGTGCCCC
CGACTACTGTACTGGATATACATTGTAGCGGGTGCTGTACTTTTGAAGTA
CTTCCAAGCGCTTTTGAGTGAGTGAGCACAGTGGCTCGTACAGCACGACG
GTGTGTCCAACACCGCACAGGATATTTACGTACTAAACCCTAACTTCCAG
GCACCTCCCTGCATGGCCCCGCCCCAAACCCACCCCCCCGGTGGACCACA
GGTGGCCCGAGTTTGCGCGCCAGGCCCTTTGCTCCCTCCTGCAGCTGTGG
GACCAAAACGAGGATCCCCTCCAGGTGAACAATGCCGCTGTACAGCGAGT
CAAGCCTGCTCCCAGCGAGAGAGTAGTACAGTAGCAAGGTCTAAGTGGAT
GGCGTGCCGCCACAAGCGCTCGCGTGCTTTTCAATGCGCGGCGTTTGTCC
GAGGATTCGTGTGTGCTGTGCTGTACTCGTACTCGAGTACTGTACTGTAG
AGCTCTCTGCCGCACCCTTGTGCAGGTGCTGCGCCGGCAATACTTGTGCA
GTGCTTGTAAGTTGCTTGAAGCGCGTGCTGGACGTCCGCTACTTCACCGC
TGCAAACAAACGCGCACACGAGTACTTGGAATCTGGTTGATCTCGACCAA
CTCCCTGCCCCCCCCCCCCGCCCCATGACGCCCCCTGATCTCTGCGTCGA
ACGGCGCCGCGTCCAGGACATGATTGGCCTGGGGCGGGGCTCTGGCGCAG
GCCCCGACACTGACGTTGCCGGGGCGGGGATGTGGAACCCGGCCACCCAG
GCGTTGGCGTTCGCGCGCGTGGGGGGGGGTTCGCTGAGCGAATCGGCGAT
CGCCCGTATGGCGGGCTGGATGGCCGGGCAGCACGACCCGCACGCGGGGG
CGCGGCTGATGGCGCTTCTCACCCCCGAGGCTTTCCTGGTGGGTACGGGT
TTCAGTACTCGTGGTTAGTAAATCACGTGTTATCTCTAGTACTAGTATTG
CGGCTCTGCCAGGGGGTCCTGCTCCGTCTCGACCGAGGCGCGTGGTCAAT
GGTCTCGGGACTACGGCAAGCGCAATGTGAGGACATACTTCGTATATTGC
AGTACCGTATATCGTTCCAAGTGTGTATTATTTACCCCTCCCACGCTGGC
CCTGCCGGGGGAGGCGGGGGGCCTGCCCCGTGTATTGTCGGCCGAGGCGC
TATAGTGGTCAATTGTCTCGGGACACGTGTGCTTGCCGTCGTCCCGAGAC
CATGGGACCACGTGCCTTTGATGACGGAGCATTCTCCCTCCTGAACCCTG
GCAAGCCAGGGTGGGAGGAAGGCACCACCCCGCCGATCATGGCGGGGCAG
TGGTTGGGTCCATGCCCGCCCAGCTCCTGACTCGTGAAAGTCAGGGCGGC
GGGGACCTCTCCCCTGCCGGTCCGAGGTTCAGCAGAGGAGGGGGGCCCCC
TGCCATGCCGGGGCATGGAGGGGGATATCCAAGGTCACCATCTGCACTTC
CAAGTACACTACAGTAGCACTGCTGAGTGCTCTATGTACAGTACTGCACT
ACTACTACAAAGCATGGCCAACTACAGCCTTCCAAGCACTGCGCAAGCGA
CTCATGAGCAAGACATCCCCCCCCCCCCCCCCCCCCCCGCCCGCCCGCCC
GTCCGTCCGTTCCCCCCTCTCCCAGGAGGCACAGGGGCCTCTGTCAGCTG
CGGCGGCCGCCGGGAAGAAGAAGAAGAGGGGGCCCGGCCGCCCGGCCGCC
CCCGAGGAGCCCCTCGTCACCGTGCCCTGGGAGGCGTCCACCGACCGGGC
AGTGCTGGACGCGGTGCAAGCACGCCTGACCAGGTGGAGGGCGGAGAACA
CACGCCTCGTGGAGGAGGAGACGCGCGCCGTGCAGGCCGAGGTGTCCGCC
CGCGGGAGGCTCAAGAAGGAGGGGAATGGGGTCCCCTCGCCCGGCGGCGG
CAGCAGTGGCAGGGGTGGCGGCGCCTCGGCTTCCTCTGCTGGTGGCGGCG
GCGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig10:1970375..1975929- >mRNA_S-ischiensis_contig10.1478.1 ID=mRNA_S-ischiensis_contig10.1478.1|Name=mRNA_S-ischiensis_contig10.1478.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1716bp|location=Sequence derived from alignment at S-ischiensis_contig10:1970375..1975929- (Schizocladia ischiensis KU_0333)
GAGGGGGTGGGGAGGAACTCTGTAGAGCCGGTGCCCAGCCCCCTGGGCGT
GCCCGGCGCGGTTGCGTGCCCTACCCCGGGGCAGCTGTACAAGGCGATGG
TGGGGCCGGACCGTGCGTGGCTGGACGCTGTGCAGGAGGGGGTGGGGAGG
AACTCTGTAGAGCCGGTGCCCAGCCCCCTGGGCGTGCCCGGCGCGGTTGC
GTGCCCTACCCCGGGGCAGCTGTACAAGGCGATGGTGGGGCCGGACCGTG
CGTGGCTGGACGCTGTGCAGGTGCGACTGGTGGACATGCTGCAGGCGGAG
GTTCTGGGGGTCCTGGGCACTGCGGGTCGGGCAGGCGCCGCGGTTTCCAC
ACGGCCCAACTCGCTCACGTGCGACTGGTGGACATGCTGCAGGCGGAGGT
TCTGGGGGTCCTGGGCACTGCGGGTCGGGCAGGCGCCGCGGTTTCCACAC
GGCCCAACTCGCTCACGTGGCCCGAGTTTGCGCGCCAGGCCCTTTGCTCC
CTCCTGCAGCTGTGGGACCAAAACGAGGATCCCCTCCAGGTGGCCCGAGT
TTGCGCGCCAGGCCCTTTGCTCCCTCCTGCAGCTGTGGGACCAAAACGAG
GATCCCCTCCAGGACATGATTGGCCTGGGGCGGGGCTCTGGCGCAGGCCC
CGACACTGACGTTGCCGGGGCGGGGATGTGGAACCCGGCCACCCAGGCGT
TGGCGTTCGCGCGCGTGGGGGGGGGTTCGCTGAGCGAATCGGCGATCGCC
CGTATGGCGGGCTGGATGGCCGGGCAGCACGACCCGCACGCGGGGGCGCG
GCTGATGGCGCTTCTCACCCCCGAGGCTTTCCTGGACATGATTGGCCTGG
GGCGGGGCTCTGGCGCAGGCCCCGACACTGACGTTGCCGGGGCGGGGATG
TGGAACCCGGCCACCCAGGCGTTGGCGTTCGCGCGCGTGGGGGGGGGTTC
GCTGAGCGAATCGGCGATCGCCCGTATGGCGGGCTGGATGGCCGGGCAGC
ACGACCCGCACGCGGGGGCGCGGCTGATGGCGCTTCTCACCCCCGAGGCT
TTCCTGGAGGCACAGGGGCCTCTGTCAGCTGCGGCGGCCGCCGGGAAGAA
GAAGAAGAGGGGGCCCGGCCGCCCGGCCGCCCCCGAGGAGCCCCTCGTCA
CCGTGCCCTGGGAGGCGTCCACCGACCGGGCAGTGCTGGACGCGGTGCAA
GCACGCCTGACCAGGTGGAGGGCGGAGAACACACGCCTCGTGGAGGAGGA
GACGCGCGCCGTGCAGGCCGAGGTGTCCGCCCGCGGGAGGCTCAAGAAGG
AGGGGAATGGGGTCCCCTCGCCCGGCGGCGGCAGCAGTGGCAGGGGTGGC
GGCGCCTCGGCTTCCTCTGCTGGTGGCGGCGGCGGCGAGGCACAGGGGCC
TCTGTCAGCTGCGGCGGCCGCCGGGAAGAAGAAGAAGAGGGGGCCCGGCC
GCCCGGCCGCCCCCGAGGAGCCCCTCGTCACCGTGCCCTGGGAGGCGTCC
ACCGACCGGGCAGTGCTGGACGCGGTGCAAGCACGCCTGACCAGGTGGAG
GGCGGAGAACACACGCCTCGTGGAGGAGGAGACGCGCGCCGTGCAGGCCG
AGGTGTCCGCCCGCGGGAGGCTCAAGAAGGAGGGGAATGGGGTCCCCTCG
CCCGGCGGCGGCAGCAGTGGCAGGGGTGGCGGCGCCTCGGCTTCCTCTGC
TGGTGGCGGCGGCGGC back to top
|