mRNA_S-ischiensis_contig10.1467.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1467.1
Unique NamemRNA_S-ischiensis_contig10.1467.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1905183..1907709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size400
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1467.1prot_S-ischiensis_contig10.1467.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1905183..1907708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.817678-CDS-S-ischiensis_contig10:1905182..19052381622815497.817678-CDS-S-ischiensis_contig10:1905182..1905238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1905183..1905238 +
1695739735.310765-CDS-S-ischiensis_contig10:1905182..19052381695739735.310765-CDS-S-ischiensis_contig10:1905182..1905238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1905183..1905238 +
1622815497.8333375-CDS-S-ischiensis_contig10:1905980..19062531622815497.8333375-CDS-S-ischiensis_contig10:1905980..1906253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1905981..1906253 +
1695739735.3223004-CDS-S-ischiensis_contig10:1905980..19062531695739735.3223004-CDS-S-ischiensis_contig10:1905980..1906253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1905981..1906253 +
1622815497.8504233-CDS-S-ischiensis_contig10:1907638..19077081622815497.8504233-CDS-S-ischiensis_contig10:1907638..1907708Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1907639..1907708 +
1695739735.3347816-CDS-S-ischiensis_contig10:1907638..19077081695739735.3347816-CDS-S-ischiensis_contig10:1907638..1907708Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1907639..1907708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1467.1

>prot_S-ischiensis_contig10.1467.1 ID=prot_S-ischiensis_contig10.1467.1|Name=mRNA_S-ischiensis_contig10.1467.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
GRYGRWRTRRLGMWTSLSRRAGTLPSAAAAQACHRRGPPRQPVTQNTSAD
SELELATQAWWMAPALRRGVTGPRLALGAPALARMAVWMLRRLPGRPPWL
GWSWLPGTSRPRGHSPSCCRTGSARTPCAASRG
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mRNA from alignment at S-ischiensis_contig10:1905183..1907709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1467.1 ID=mRNA_S-ischiensis_contig10.1467.1|Name=mRNA_S-ischiensis_contig10.1467.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2527bp|location=Sequence derived from alignment at S-ischiensis_contig10:1905183..1907709+ (Schizocladia ischiensis KU_0333)
GGGCGGTACGGCCGGTGGAGGACCAGGAGATTGGGGATGTGGACTTCCTT
GTCAAGGTGGGCAGGTCTGTCCGTGCCTTGGCGGGGACGGCGAGATCGAA
GCTTGGCAATGGACAGATGTACTTCGAAGTATGCTTTTCCATCAGGCGAG
GTGCAAAGGTCACGAGTGGCAGTGCCAGCGGGTATGCATGCATGCCTGCG
AGTCCAAACGAACTGGGATGAAAATCGATTTCACCGACTGCCCGAAGGCT
AGGTACTGACTTGTCTAGTTGGGTACCTCATATGCTGTGCTTGGAAGTAC
CGTACATTGTACTTTGAAGCACTGTAGTGCTTACTGAGCTACTTAGAAGC
ACTTGTACAGTACGTACTCACTCGTACTCGAGTAGTGTACCTCCCTCAAG
TACGAGTACTGTACAGTACTGTATTTCAGTAGCTTGCGGGGCCAGCAGTG
CATGATCATCTGCCAGTCACCAACAACTTCGGAACCCCCCTTCGCCACCT
CCCTTTGCCTTGACGCAAAAAGCATAGCATCCCCTTGAAGGCTTACCACT
GGAAGTGATCTGCCCCCCGCCCCCCCGCCTTTCGGCATCCTCCGGAGACT
CAAATGGCGGCCGTGCCCGCCCGCCTCCCAGCCTCCTATTGCCCAACTCA
CACAAGGCCTGCACAACACATGGCCCGGGGCCCCTGGCCACGGCCTGCCA
TGTCCCGCCCCCTCACTCACCCGCCCTGTGGGTCTCCGGGCACGGCCCCC
CACGGGTCGTCGTCGGGTCCACTGGCACACCCTGCTGCATCGTGGCAGGC
GTGCTGGAACATTGCCGTCCGCTGCTGCCGCTCAGGCGTGCCATCGTCGG
GGACCGCCGCGGCAGCCCGTGACTCAGAACACATCAGCGGACTCGGAGTT
GGAGCTGGCGACTCAGGCTTGGTGGATGGCCCCGGCACTGAGGCGGGGGG
TGACAGGCCCGCGGCTGGCGCTGGGGGCGCCGGCTTTGGCCAGGATGGCG
GTATGGATGCTGCGGCGGCTGCCCGGGCGGCCGCCCTGGCTTGGGTGGAG
CTGGCTCCCTGGTACTTCCAGGTGGGCGGGAGAGAGGGTAAGGTACTAAG
GTGCCATGTGGTGAGGGGTGGGCGAGAGGAGGTGGGGTGCCTGGCTGGTA
CTTAGCGTCGCAGCACGCAGCACTATGTACGGTGCCTAGACTATAAAGTA
GTACCGCGGTGCATGCATTCACAGCAGCATGCGCTAGATACCGCTCTGGT
GATCCATCCAACTTTTATTGAACAGGCAAGTACGCGTGCTTCGAAGTGCT
ACGTCACTGTGTCGTCACTGTGTTTGGCGCACGCGCTGTGCTGTTGCCGA
CCTGCACGTCGTCTTGAGGGGACTCGGCGGTGCCTTGTGGGGACTTGAAA
GCCCCGGTGGCCGCCTTGCTGGTCACTGACGGTTGCCACTTCTCAGGATA
TCTGGGTTGTGTACTTCGTAGGTCGTTTTGCCCGCTGAGACTGCGGCAAT
GTGGCCCTCAACTATGATACTGTAAAGAATTGAGGGTAGTATTCAATACT
TCGAAGTACAAGGTACAATGATATTGAAGTGGTACGAGCAACCACCCGGG
CACACACCTGTTTGGACTTGAAAGTGCCAATGTGCGCTACGTGATGAAGT
AGTTGATGACTGTATCCGGAAACAGCCGACCGCGAACACAGCTTGCACGG
GACCAGCCCAACGGCAGCCGGCGGCCGCGCAGCGGGGCTGAGGCCCCGCC
GCAGCCGTCCCTCCGGGACATCTCCCCCCCCCGCCGTCGCGTGCTGTGCT
GTACGCAGTACACTACTAGGAAGCAGTGCTTTATTCGTCAACCCTCACTC
AGCCTACCAGGCGTTTTCGACTAGCGTAGTGTACGAGTACACGGATTGCT
GTACGGGTTGGAAGCAGTAGTTGCTATGTAGTAGTACTTTGAAGTAGTTA
CAATATGTAGCCCTTCGCACACTGGCGCTTGCGACTTGCGCATCCTGTCT
GGAGGCAAACTTGACGGCGGGTGGCCTTTTTGACAACTACGCTCCGTGCG
CATCCAACTATGTAGCACTTCTACCTGCTGTACTCGAATACACACTTGGT
TGATTTTCTCTCGTTTGGCTTTGTCGGTCGCTGCGTCTCTTGAGTTACCC
CTGCACGCCGCTGGTCAGGTGGCAACGGATAAAGTACACTAACGTGGTTA
ACGTGGTACACTGCTATGGTAGTACTCGAGTCCGTCTCAGGAGACTGTGA
TTCCACAATACTTACCTAGTGGACATATGCACCACCCGAATAACTACCGT
AGACCCACCCACAATCCTTGAGTGTGCTCCTGTGCCGCTGTCCTCCGACG
CACGCGCCCAACTCGCACACGCATCATCAACCCTGAGTCGCCGAGGCCAC
CTGCGACTCGTTCCCCCACGCGCCCACGGGTGTGTAACAACAACCGCCGC
GTGAAGGCCTCGCGGACATTCACCCAGCTGCTGCCGGACGGGGAGTGCGC
GGACGCCCTGCGCGGCCAGCAGGGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1905183..1907709+

>mRNA_S-ischiensis_contig10.1467.1 ID=mRNA_S-ischiensis_contig10.1467.1|Name=mRNA_S-ischiensis_contig10.1467.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig10:1905183..1907709+ (Schizocladia ischiensis KU_0333)
GGGCGGTACGGCCGGTGGAGGACCAGGAGATTGGGGATGTGGACTTCCTT
GTCAAGGGGCGGTACGGCCGGTGGAGGACCAGGAGATTGGGGATGTGGAC
TTCCTTGTCAAGGCGTGCTGGAACATTGCCGTCCGCTGCTGCCGCTCAGG
CGTGCCATCGTCGGGGACCGCCGCGGCAGCCCGTGACTCAGAACACATCA
GCGGACTCGGAGTTGGAGCTGGCGACTCAGGCTTGGTGGATGGCCCCGGC
ACTGAGGCGGGGGGTGACAGGCCCGCGGCTGGCGCTGGGGGCGCCGGCTT
TGGCCAGGATGGCGGTATGGATGCTGCGGCGGCTGCCCGGGCGGCCGCCC
TGGCTTGGGTGGAGCTGGCTCCCTGGTACTTCCAGGCGTGCTGGAACATT
GCCGTCCGCTGCTGCCGCTCAGGCGTGCCATCGTCGGGGACCGCCGCGGC
AGCCCGTGACTCAGAACACATCAGCGGACTCGGAGTTGGAGCTGGCGACT
CAGGCTTGGTGGATGGCCCCGGCACTGAGGCGGGGGGTGACAGGCCCGCG
GCTGGCGCTGGGGGCGCCGGCTTTGGCCAGGATGGCGGTATGGATGCTGC
GGCGGCTGCCCGGGCGGCCGCCCTGGCTTGGGTGGAGCTGGCTCCCTGGT
ACTTCCAGGCCTCGCGGACATTCACCCAGCTGCTGCCGGACGGGGAGTGC
GCGGACGCCCTGCGCGGCCAGCAGGGGTGCCTCGCGGACATTCACCCAGC
TGCTGCCGGACGGGGAGTGCGCGGACGCCCTGCGCGGCCAGCAGGGGT
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