mRNA_S-ischiensis_contig10.1457.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1457.1
Unique NamemRNA_S-ischiensis_contig10.1457.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.420e-25
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 2 
Query:  131 KGDTSEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDS 364
            +G+ SE+G ARGVDFR VSFVLNVDFPPTASSY HR GRTARGGASGTALSL+LA+D+ +   L++VQ+S P+L   S
Sbjct:  478 RGEDSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQSSQPSLAAPS 555
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.630e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 2 
Query:  131 KGDTSEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQ 334
            +G+ SE+G ARGVDFR VSFVLNVDFPPTASSY HR GRTARGGASGTALSL+LA+D+ +   L++VQ
Sbjct:  535 RGEDSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQ 602
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.710e-23
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:  131 KGDTSEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPV 358
            KGD +EYGVARG+DFR V FV+NVDFPP+A SY HR GRTARGGASGTALSL+  R  AE   L +VQAS PALP+
Sbjct:  377 KGD-AEYGVARGIDFRGVKFVMNVDFPPSARSYTHRVGRTARGGASGTALSLLCERAPAEVAALAEVQASQPALPL 451
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A4D9D2A0_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2A0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.010e-22
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  146 EYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDSG 367
            EYGV RG+DFR V+FV+NVDFP +A +Y HR GRTARGGA+GTALSL+   D  EQEVL  VQAS PALP   G
Sbjct:   15 EYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKEDAREQEVLAAVQASQPALPPSEG 88
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.510e-22
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  137 DTSEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDSG 367
            D  EYGV RG+DFR V+FV+NVDFP +A +Y HR GRTARGGA+GTALSL+   D  EQEVL  VQAS PALP   G
Sbjct:  432 DEKEYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKDDAREQEVLAAVQASQPALPPSEG 508
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A6V2D6B0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D6B0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.630e-21
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  143 SEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDS 364
            SEYGV+RG+DFR VSFV+NVDFPP + SY HR GRTARGGASG ALSL+ A  + + E L++VQ S P LP  S
Sbjct:  118 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGS 191
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A7S4VQY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQY4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.340e-21
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  143 SEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDS 364
            SEYGV+RG+DFR VSFV+NVDFPP + SY HR GRTARGGASG ALSL+ A  + + E L++VQ S P LP  S
Sbjct:  388 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGS 461
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A7S2VYS2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYS2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.450e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2 
Query:  143 SEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPV 358
            SEYGV+RG+DFR VSFV+NVDFPP+  SY HR GRTARGGASG ALSL+   D  ++ +L +VQ S P LP+
Sbjct:  370 SEYGVSRGLDFRGVSFVVNVDFPPSCQSYTHRIGRTARGGASGVALSLVNMDDTEQESMLSRVQESQPPLPL 441
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: A0A1Z5KBW1_FISSO (ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW1_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 1.190e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:  143 SEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALP 355
            SEYGVARG+DFR VSFV+NVDFPP+A SY HR GRTARGGA G ALSL+  +   E + L  VQ   PALP
Sbjct:  362 SEYGVARGLDFRNVSFVVNVDFPPSAKSYAHRVGRTARGGAKGVALSLVDNKSAEEFQTLLAVQDDQPALP 432
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BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Match: M4BKX7_HYAAE (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=M4BKX7_HYAAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.630e-19
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:  131 KGDTSEYGVARGVDFREVSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKVQASLPALPVDS 364
            +GD   YGV+RGVDFR V FV+NVDFP +  +Y HR GRTARGGASGTALSL+   D  E+  L++VQA   A+  +S
Sbjct:  437 RGDDKSYGVSRGVDFRGVKFVINVDFPKSVRAYTHRIGRTARGGASGTALSLVAKEDSKEERALKRVQAKQQAVRSES 514
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE7_ECTSI1.420e-2569.23DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KX88_9PHAE2.630e-2373.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDE1_9STRA2.710e-2371.05DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D2A0_9STRA2.010e-2267.57Helicase C-terminal domain-containing protein n=1 ... [more]
W7TVX7_9STRA4.510e-2266.23Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
A0A6V2D6B0_9STRA4.630e-2164.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VQY4_9STRA7.340e-2164.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2VYS2_9STRA3.450e-2063.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5KBW1_FISSO1.190e-1966.20ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fist... [more]
M4BKX7_HYAAE1.630e-1957.69Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1841151..1842008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue5e-22
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1457.1prot_S-ischiensis_contig10.1457.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1841151..1841977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.3801887-CDS-S-ischiensis_contig10:1841150..18412351622815527.3801887-CDS-S-ischiensis_contig10:1841150..1841235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1841151..1841235 -
1695739749.531403-CDS-S-ischiensis_contig10:1841150..18412351695739749.531403-CDS-S-ischiensis_contig10:1841150..1841235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1841151..1841235 -
1622815527.394875-CDS-S-ischiensis_contig10:1841726..18419771622815527.394875-CDS-S-ischiensis_contig10:1841726..1841977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1841727..1841977 -
1695739749.5441132-CDS-S-ischiensis_contig10:1841726..18419771695739749.5441132-CDS-S-ischiensis_contig10:1841726..1841977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1841727..1841977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.4086916-UTR-S-ischiensis_contig10:1841977..18420081622815527.4086916-UTR-S-ischiensis_contig10:1841977..1842008Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1841978..1842008 -
1695739749.5538065-UTR-S-ischiensis_contig10:1841977..18420081695739749.5538065-UTR-S-ischiensis_contig10:1841977..1842008Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1841978..1842008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1457.1

>prot_S-ischiensis_contig10.1457.1 ID=prot_S-ischiensis_contig10.1457.1|Name=mRNA_S-ischiensis_contig10.1457.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MAKAKTSSAELGKANAARGKKRGRSNGAASASAKGDTSEYGVARGVDFRE
VSFVLNVDFPPTASSYVHRAGRTARGGASGTALSLILARDQAEQEVLRKV
QASLPALPVDSG
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mRNA from alignment at S-ischiensis_contig10:1841151..1842008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1457.1 ID=mRNA_S-ischiensis_contig10.1457.1|Name=mRNA_S-ischiensis_contig10.1457.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig10:1841151..1842008- (Schizocladia ischiensis KU_0333)
CGAGGAGGAGGAGCAGGAGCAGGGCGGAGACATGGCCAAGGCAAAGACGA
GCAGCGCAGAATTAGGGAAGGCGAACGCAGCTCGAGGGAAGAAGAGGGGC
CGCAGCAACGGTGCCGCCTCGGCGTCTGCCAAGGGAGACACCTCCGAGTA
TGGCGTTGCCCGGGGGGTGGACTTCCGCGAAGTGTCCTTTGTGCTCAACG
TTGACTTCCCCCCCACCGCCTCCAGCTACGTGCACCGGGCGGGGCGCACC
GCCCGGGGGGGGGCCTCGGGCACTGCCCTCAGGTGTGTGGAGATGTGGGG
TGGAGTGGAGACGTGTGTGTGTGTGTGTGTTTGTGTGTCACGTCGTTTGT
GGTTTGTTCCCCCTGGAGGCAATTGCGCCACGAACGTGTGTTGCATGGGG
TCGTCAGGCCTGCAGTGCAGGAGGCAGTGCACAAACCCCCAAGTTTGCCC
GAGCACTTGTAGTGCATGTGCTTCGAAGTATGGTGCAGTAGAGTACAGTT
TCAGTGGGCCCACGTCGGGAAGATGGTCCCTGAAGCGGTACTTGCACCAA
TGGTATGCGTTCTCCTGCCCTCTGTCCCTCCTGGATCCCCCCCCCCACCT
CGCTGTCTCTTTCCTCCTCCTCCTCCTGCTCCTCCTCCTCCGCCTTCCCC
CTCCCTTCCTGTCTCACTCCTTATCTTCTTCCTGCTCCTCCTCCTCATCC
TCCTCCTCCTCCTCCCCCGCTCCCTCCTCCCCACCATCCCCCCCCCGTCC
CCCCCTCCACCCTTGCCGGACAGCCTCATCCTTGCCCGCGACCAAGCTGA
ACAAGAAGTCCTGCGCAAAGTTCAGGCCTCCCTACCAGCCCTGCCCGTGG
ACAGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1841151..1842008-

>mRNA_S-ischiensis_contig10.1457.1 ID=mRNA_S-ischiensis_contig10.1457.1|Name=mRNA_S-ischiensis_contig10.1457.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig10:1841151..1842008- (Schizocladia ischiensis KU_0333)
ATGGCCAAGGCAAAGACGAGCAGCGCAGAATTAGGGAAGGCGAACGCAGC
TCGAGGGAAGAAGAGGGGCCGCAGCAACGGTGCCGCCTCGGCGTCTGCCA
AGGGAGACACCTCCGAGTATGGCGTTGCCCGGGGGGTGGACTTCCGCGAA
GTGTCCTTTGTGCTCAACGTTGACTTCCCCCCCACCGCCTCCAGCTACGT
GCACCGGGCGGGGCGCACCGCCCGGGGGGGGGCCTCGGGCACTGCCCTCA
GATGGCCAAGGCAAAGACGAGCAGCGCAGAATTAGGGAAGGCGAACGCAG
CTCGAGGGAAGAAGAGGGGCCGCAGCAACGGTGCCGCCTCGGCGTCTGCC
AAGGGAGACACCTCCGAGTATGGCGTTGCCCGGGGGGTGGACTTCCGCGA
AGTGTCCTTTGTGCTCAACGTTGACTTCCCCCCCACCGCCTCCAGCTACG
TGCACCGGGCGGGGCGCACCGCCCGGGGGGGGGCCTCGGGCACTGCCCTC
AGCCTCATCCTTGCCCGCGACCAAGCTGAACAAGAAGTCCTGCGCAAAGT
TCAGGCCTCCCTACCAGCCCTGCCCGTGGACAGTGGCCCTCATCCTTGCC
CGCGACCAAGCTGAACAAGAAGTCCTGCGCAAAGTTCAGGCCTCCCTACC
AGCCCTGCCCGTGGACAGTGGC
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