mRNA_S-ischiensis_contig10.1440.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 196 bits (497), Expect = 4.450e-58 Identity = 129/261 (49.43%), Postives = 163/261 (62.45%), Query Frame = 1
Query: 127 MRLRDGDSVRAFNGEHGEFVATVSGV-GARSGRATGKG---AHRETALHIESQLRPQ--DGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHG-EEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAACARLG 888
MRLRDG +VRAFNG GE++ T+S G+ S + GKG A AL +E QLR Q D + WLL API++ R+K+LVEKATELG +C+ V TAHTQEA ++A +L A+EA+EQCERL++P L PA PL LL W + P R LFVC ERSP + P+L+AL AS G P AFLVGPEGGFS +E + +A L +++ VSLGA VLR+ETAALYALSC+S+ A G
Sbjct: 1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDSCADLD---VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEA-LDAEGTSRLLPIAIEAAEQCERLSLPHLHPPA-PLPELLARWHSE---------PHTRARQLFVCQERSPQSPPLLEAL--AAASAARGVPSSAAPAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAAAG 245
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.150e-50 Identity = 140/328 (42.68%), Postives = 183/328 (55.79%), Query Frame = 1
Query: 43 PRLYVD-LPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATV--------------------SGVGARSGRATGK--GAHRETALHIESQLRPQDGIPGE--------EPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAM-EASVLDKL-ATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAM-------DTVVPLGPE--APQPRPATLFVCVERSPDALPVLQAL--------DDLLASPLHGEEGP--PPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
PR+Y++ L G +V L+ EQ +LV VMRLRDG VR F+G +GEF+A V SG G R GR GA + L +E R Q GI G + P L+FAPIRK RLK+LVEKA E+GAS L V TA TQ+ A+ +AS+LD+L A TAVEA+EQCER+TVP + P V LA L + +++ L + P +FVC ER DA P+L+AL ++ ++ +G AFL+GPEGGF P+E+ ++A FVR VSLG VLR+ETAA+YALS WSA
Sbjct: 144 PRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASP-VTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 470
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI0004150087 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004150087) HSP 1 Score: 174 bits (441), Expect = 2.220e-49 Identity = 119/275 (43.27%), Postives = 151/275 (54.91%), Query Frame = 1
Query: 46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
RLYVD PLA G +V L E+AH+L VMR GD++ FNG GE+ AT+ G G KG +L ++ +LR Q P WLLFAP+++ R+ + EKA+ELGAS + V T T + LD+L AVEA+EQCERLTVP L P VPL L GW D V LF C E S A+PV +A+ H P AFLVGPEGGF E+ ++ +L FV PV LG +LR++TAA AL+CW A
Sbjct: 18 RLYVDGPLATGQAVGLDHERAHYLRHVMRRDRGDAIAVFNGRDGEWRATIDGFG--------KGW---CSLTVDGRLRAQTAAPD-----LWLLFAPLKRGRIDTVAEKASELGASRIWPVFTRRTDPHRVN---LDRLRANAVEAAEQCERLTVPELAEP-VPLDRALAGWPADRV--------------LFFCAE-SGSAIPVAEAVR------AHATR---PAAFLVGPEGGFDTRELDAIRNLPFVVPVGLGPRILRADTAAFAALACWQA 248
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A2S2CPY0_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPY0_9PROT) HSP 1 Score: 172 bits (437), Expect = 6.250e-49 Identity = 119/273 (43.59%), Postives = 148/273 (54.21%), Query Frame = 1
Query: 46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCW 864
RL+VD PLA GLSV L E+AH L V+RL GD+V FNG GE++A + G G KG +L + Q PQ G P WLLFAP++K R+ + EKATE+G S L V T T + LD+L AVEASEQCERLTVP L P VPL+ L W P TLF+C E S A PV +A+ E G P A L+GPEGGF E+ ++ L FV PV LG +LR++TA + AL+CW
Sbjct: 8 RLFVDSPLAEGLSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWLALIDGFG--------KGW---CSLAVRHQRLPQSGEPD-----LWLLFAPLKKARIDFVAEKATEMGVSRLWPVFTRRTDPNRVN---LDRLRAHAVEASEQCERLTVPDLSEP-VPLSRALADW--------------PEGRTLFLCAE-SGAARPVAEAMR---------ERGRGPAALLIGPEGGFEKSELDEISKLSFVVPVGLGPRILRADTAVVAALACW 236
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI001A961B97 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A961B97) HSP 1 Score: 171 bits (434), Expect = 2.330e-48 Identity = 116/275 (42.18%), Postives = 149/275 (54.18%), Query Frame = 1
Query: 46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
RLYV+ PLA G SV L E+AH L V+RL GD V FNG GE++A + G G KG +L +E + RPQ E+ P WLLFAPI++ R+ + EKA+ELGAS + V T T + + LD+L A+EA+EQCERLTVP L P V LA L GW P TL++C E P+ +A+ D G P AFLVGPEGGF E+ + L FV PV LG +LR++TA + AL+ W A
Sbjct: 13 RLYVESPLAEGQSVGLDHERAHFLRHVLRLDKGDLVAVFNGRDGEWLAAIDGFG--------KGW---CSLAVEERRRPQ-----EDGPDLWLLFAPIKRARIDSVAEKASELGASRIWPVFTRRTDPSRVN---LDRLRANAIEAAEQCERLTVPELSEP-VTLAKALAGW--------------PEERTLYLCAEAG-SVRPIAEAVRD---------RGAGPAAFLVGPEGGFDKSELDEFSKLSFVVPVGLGPRILRADTAVVAALALWQA 243
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: W9H021_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9H021_9PROT) HSP 1 Score: 170 bits (431), Expect = 6.000e-48 Identity = 118/287 (41.11%), Postives = 154/287 (53.66%), Query Frame = 1
Query: 10 TSSRQPPLHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
T S + P T RL+VD PLAAG +V L E+AH+L V+RL GD V FNG GE+ A + G G KG +L ++ Q RPQ P WLLFAPI++TR+ + EKA ELGAS + V T HT A + +D+L A+EA+EQCERLTVP L PA L + W+ D T+ +C E P P+ A+ L P+ A L GPEGGF+ +E+ + L FV PV LG +LR++TAAL AL+CW A
Sbjct: 7 TGSPEAPPKT--RLHVDEPLAAGATVGLDHERAHYLRHVLRLDRGDRVALFNGRDGEWSARIDGFG--------KGW---CSLAVDRQRRPQ-----APEPDLWLLFAPIKRTRIDFVAEKAAELGASVVWPVLTRHTDVARVN---VDRLRANAIEAAEQCERLTVPDLREPAK-LDQVTRDWSSDR--------------TILLCAEAGP-VKPIAAAVAGLKPGPV---------AILTGPEGGFAKDELDGLLKLPFVVPVGLGPRILRADTAALAALACWQA 247
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI001AEAA837 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum soli TaxID=1304799 RepID=UPI001AEAA837) HSP 1 Score: 169 bits (427), Expect = 2.060e-47 Identity = 116/275 (42.18%), Postives = 147/275 (53.45%), Query Frame = 1
Query: 46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
RLYVD PLA G +V L E+AH L V+RL GD V FNG GE++A + G G KG +L + +Q RPQ G P WLLFAPI++ R+ + EKA+ELGAS + V T T + D+L A+EA+EQCERLTVP L P VPL L GW P TL++C E P+ +A+ A P P AFLVGPEGGF E+ + L FV PV LG +LR++TA + AL+CW A
Sbjct: 13 RLYVDSPLAEGQAVGLDHERAHFLRHVLRLDKGDVVAVFNGRDGEWLAAIDGFG--------KGW---CSLTVSAQRRPQQGEPD-----LWLLFAPIKRGRIDFIAEKASELGASRIWPVFTRRTDPNRVNT---DRLRANAIEAAEQCERLTVPELSEP-VPLDKALAGW--------------PEERTLYLCAEAG-HVRPIAEAMR---ARPRG------PAAFLVGPEGGFQQSELDEICKLPFVVPVGLGPRILRADTAVVAALACWQA 243
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 169 bits (428), Expect = 4.030e-47 Identity = 131/300 (43.67%), Postives = 167/300 (55.67%), Query Frame = 1
Query: 127 MRLRDGDSVRAFNGEHGEFVATV------------------SGVGARSGRA--TGKGAHRETALHIESQLRPQDGIPGE--------EPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAM-EASVLDKL-ATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAM-------DTVVPLGPEAPQPR--PATLFVCVERSPDALPVLQAL-------------DDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
MRLRDG+ VR F+G +GEF+A V SG G R GR + GA + L +E R Q GI G + P L+FAPIRK RLK+LVEKA E+GAS L V TA TQ+ A+ +AS+LD+L A TAVEA+EQCER+TVP + P V LA L + ++V L + R P +FVC ER DA P+L+AL D + +S + AFL+GPEGGF P+E+ ++A FVR VSLG VLR+ETAA+YALS WSA
Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASP-VTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANA---AFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 296
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A1Q8FZS0_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FZS0_9PROT) HSP 1 Score: 167 bits (424), Expect = 4.360e-47 Identity = 111/285 (38.95%), Postives = 157/285 (55.09%), Query Frame = 1
Query: 31 LHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPV---LQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAAC 876
+ T PRL++D+PL+ G +V LS E AH+L+ VMR +GD VR FNG GE+ A ++ A+ K A AL + Q RPQ G+P WLLFAP+++T+ ++++EKATELG + + V TA TQ + D+L A EA+EQ ERL +P + L +L+ W D + C E DA + +A+ L G G P A L+GPEGGFSP E + + +LD V PV+LG +LR+ETAA+ AL+ W +AC
Sbjct: 1 MSTDPRLFLDVPLSVGAAVPLSREDAHYLINVMRRGEGDVVRVFNGTDGEWSAVIA-------HASKKAA----ALTVGEQTRPQLGVPD-----LWLLFAPVKRTKTELIIEKATELGVAAICPVTTARTQSDRIR---FDRLQAIAKEAAEQTERLDLPEIR-DVEKLDKVLDAWPADREI--------------IFCDESGDDADEAWGGARGRGQPMATTLDGVGGRPA-AILIGPEGGFSPAERERLRALDHVIPVTLGPRILRAETAAIAALTIWQSAC 250
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A1J5SQ47_9ZZZZ (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SQ47_9ZZZZ) HSP 1 Score: 167 bits (423), Expect = 5.970e-47 Identity = 114/284 (40.14%), Postives = 151/284 (53.17%), Query Frame = 1
Query: 46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAACARLGAAP 897
RL+VD LA G ++ L++EQAH+L+ VMR G V FNG GE+ A + G + GR L +ES RPQ P WLLFAPI++TR+ + EKATELG S L V T HT M ++L A+EA+EQCERL+VP++ PA L LL GW + + ++ PV +AL G P P A LVGPEGGF+ E++S+ +L F PV LG +LR++TAAL AL+C+ A C G AP
Sbjct: 8 RLFVDAALAPGAALPLTAEQAHYLLSVMRAAAGTPVAVFNGRDGEWRARLEPAGRKGGR-----------LILESPSRPQ-----APEPDLWLLFAPIKRTRIDFIAEKATELGVSALQPVFTRHT---VMSRVNDERLRAIAIEAAEQCERLSVPQVR-PAAALDSLLAGWPSER---------------RLILLDEGGGGRPVAEAL---------GALPPGPAALLVGPEGGFAAAELESLRALPFTVPVGLGPRILRADTAALAALACYQALCGDGGLAP 247 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1440.1 >prot_S-ischiensis_contig10.1440.1 ID=prot_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=302bp MKRTSSRQPPLHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSback to top mRNA from alignment at S-ischiensis_contig10:1645536..1646441- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1440.1 ID=mRNA_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig10:1645536..1646441- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:1645536..1646441- >mRNA_S-ischiensis_contig10.1440.1 ID=mRNA_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig10:1645536..1646441- (Schizocladia ischiensis KU_0333)back to top |