mRNA_S-ischiensis_contig10.1440.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1440.1
Unique NamemRNA_S-ischiensis_contig10.1440.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 196 bits (497), Expect = 4.450e-58
Identity = 129/261 (49.43%), Postives = 163/261 (62.45%), Query Frame = 1
Query:  127 MRLRDGDSVRAFNGEHGEFVATVSGV-GARSGRATGKG---AHRETALHIESQLRPQ--DGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHG-EEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAACARLG 888
            MRLRDG +VRAFNG  GE++ T+S   G+ S +  GKG   A    AL +E QLR Q  D     +    WLL API++ R+K+LVEKATELG +C+  V TAHTQEA ++A    +L   A+EA+EQCERL++P L  PA PL  LL  W  +         P  R   LFVC ERSP + P+L+AL    AS   G      P AFLVGPEGGFS +E + +A L +++ VSLGA VLR+ETAALYALSC+S+  A  G
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDSCADLD---VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEA-LDAEGTSRLLPIAIEAAEQCERLSLPHLHPPA-PLPELLARWHSE---------PHTRARQLFVCQERSPQSPPLLEAL--AAASAARGVPSSAAPAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAAAG 245          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.150e-50
Identity = 140/328 (42.68%), Postives = 183/328 (55.79%), Query Frame = 1
Query:   43 PRLYVD-LPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATV--------------------SGVGARSGRATGK--GAHRETALHIESQLRPQDGIPGE--------EPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAM-EASVLDKL-ATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAM-------DTVVPLGPE--APQPRPATLFVCVERSPDALPVLQAL--------DDLLASPLHGEEGP--PPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            PR+Y++   L  G +V L+ EQ  +LV VMRLRDG  VR F+G +GEF+A V                    SG G R GR      GA +   L +E   R Q GI G         + P   L+FAPIRK RLK+LVEKA E+GAS L  V TA TQ+ A+ +AS+LD+L A TAVEA+EQCER+TVP +  P V LA  L    +        +++ L  +       P  +FVC ER  DA P+L+AL        ++     ++  +G      AFL+GPEGGF P+E+ ++A   FVR VSLG  VLR+ETAA+YALS WSA
Sbjct:  144 PRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASP-VTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 470          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI0004150087 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004150087)

HSP 1 Score: 174 bits (441), Expect = 2.220e-49
Identity = 119/275 (43.27%), Postives = 151/275 (54.91%), Query Frame = 1
Query:   46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            RLYVD PLA G +V L  E+AH+L  VMR   GD++  FNG  GE+ AT+ G G        KG     +L ++ +LR Q   P       WLLFAP+++ R+  + EKA+ELGAS +  V T  T    +    LD+L   AVEA+EQCERLTVP L  P VPL   L GW  D V              LF C E S  A+PV +A+        H      P AFLVGPEGGF   E+ ++ +L FV PV LG  +LR++TAA  AL+CW A
Sbjct:   18 RLYVDGPLATGQAVGLDHERAHYLRHVMRRDRGDAIAVFNGRDGEWRATIDGFG--------KGW---CSLTVDGRLRAQTAAPD-----LWLLFAPLKRGRIDTVAEKASELGASRIWPVFTRRTDPHRVN---LDRLRANAVEAAEQCERLTVPELAEP-VPLDRALAGWPADRV--------------LFFCAE-SGSAIPVAEAVR------AHATR---PAAFLVGPEGGFDTRELDAIRNLPFVVPVGLGPRILRADTAAFAALACWQA 248          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A2S2CPY0_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPY0_9PROT)

HSP 1 Score: 172 bits (437), Expect = 6.250e-49
Identity = 119/273 (43.59%), Postives = 148/273 (54.21%), Query Frame = 1
Query:   46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCW 864
            RL+VD PLA GLSV L  E+AH L  V+RL  GD+V  FNG  GE++A + G G        KG     +L +  Q  PQ G P       WLLFAP++K R+  + EKATE+G S L  V T  T    +    LD+L   AVEASEQCERLTVP L  P VPL+  L  W              P   TLF+C E S  A PV +A+          E G  P A L+GPEGGF   E+  ++ L FV PV LG  +LR++TA + AL+CW
Sbjct:    8 RLFVDSPLAEGLSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWLALIDGFG--------KGW---CSLAVRHQRLPQSGEPD-----LWLLFAPLKKARIDFVAEKATEMGVSRLWPVFTRRTDPNRVN---LDRLRAHAVEASEQCERLTVPDLSEP-VPLSRALADW--------------PEGRTLFLCAE-SGAARPVAEAMR---------ERGRGPAALLIGPEGGFEKSELDEISKLSFVVPVGLGPRILRADTAVVAALACW 236          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI001A961B97 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A961B97)

HSP 1 Score: 171 bits (434), Expect = 2.330e-48
Identity = 116/275 (42.18%), Postives = 149/275 (54.18%), Query Frame = 1
Query:   46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            RLYV+ PLA G SV L  E+AH L  V+RL  GD V  FNG  GE++A + G G        KG     +L +E + RPQ     E+ P  WLLFAPI++ R+  + EKA+ELGAS +  V T  T  + +    LD+L   A+EA+EQCERLTVP L  P V LA  L GW              P   TL++C E      P+ +A+ D          G  P AFLVGPEGGF   E+   + L FV PV LG  +LR++TA + AL+ W A
Sbjct:   13 RLYVESPLAEGQSVGLDHERAHFLRHVLRLDKGDLVAVFNGRDGEWLAAIDGFG--------KGW---CSLAVEERRRPQ-----EDGPDLWLLFAPIKRARIDSVAEKASELGASRIWPVFTRRTDPSRVN---LDRLRANAIEAAEQCERLTVPELSEP-VTLAKALAGW--------------PEERTLYLCAEAG-SVRPIAEAVRD---------RGAGPAAFLVGPEGGFDKSELDEFSKLSFVVPVGLGPRILRADTAVVAALALWQA 243          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: W9H021_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9H021_9PROT)

HSP 1 Score: 170 bits (431), Expect = 6.000e-48
Identity = 118/287 (41.11%), Postives = 154/287 (53.66%), Query Frame = 1
Query:   10 TSSRQPPLHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            T S + P  T  RL+VD PLAAG +V L  E+AH+L  V+RL  GD V  FNG  GE+ A + G G        KG     +L ++ Q RPQ        P  WLLFAPI++TR+  + EKA ELGAS +  V T HT  A +    +D+L   A+EA+EQCERLTVP L  PA  L  +   W+ D               T+ +C E  P   P+  A+  L   P+         A L GPEGGF+ +E+  +  L FV PV LG  +LR++TAAL AL+CW A
Sbjct:    7 TGSPEAPPKT--RLHVDEPLAAGATVGLDHERAHYLRHVLRLDRGDRVALFNGRDGEWSARIDGFG--------KGW---CSLAVDRQRRPQ-----APEPDLWLLFAPIKRTRIDFVAEKAAELGASVVWPVLTRHTDVARVN---VDRLRANAIEAAEQCERLTVPDLREPAK-LDQVTRDWSSDR--------------TILLCAEAGP-VKPIAAAVAGLKPGPV---------AILTGPEGGFAKDELDGLLKLPFVVPVGLGPRILRADTAALAALACWQA 247          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: UPI001AEAA837 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Azospirillum soli TaxID=1304799 RepID=UPI001AEAA837)

HSP 1 Score: 169 bits (427), Expect = 2.060e-47
Identity = 116/275 (42.18%), Postives = 147/275 (53.45%), Query Frame = 1
Query:   46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            RLYVD PLA G +V L  E+AH L  V+RL  GD V  FNG  GE++A + G G        KG     +L + +Q RPQ G P       WLLFAPI++ R+  + EKA+ELGAS +  V T  T    +     D+L   A+EA+EQCERLTVP L  P VPL   L GW              P   TL++C E      P+ +A+    A P        P AFLVGPEGGF   E+  +  L FV PV LG  +LR++TA + AL+CW A
Sbjct:   13 RLYVDSPLAEGQAVGLDHERAHFLRHVLRLDKGDVVAVFNGRDGEWLAAIDGFG--------KGW---CSLTVSAQRRPQQGEPD-----LWLLFAPIKRGRIDFIAEKASELGASRIWPVFTRRTDPNRVNT---DRLRANAIEAAEQCERLTVPELSEP-VPLDKALAGW--------------PEERTLYLCAEAG-HVRPIAEAMR---ARPRG------PAAFLVGPEGGFQQSELDEICKLPFVVPVGLGPRILRADTAVVAALACWQA 243          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.030e-47
Identity = 131/300 (43.67%), Postives = 167/300 (55.67%), Query Frame = 1
Query:  127 MRLRDGDSVRAFNGEHGEFVATV------------------SGVGARSGRA--TGKGAHRETALHIESQLRPQDGIPGE--------EPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAM-EASVLDKL-ATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAM-------DTVVPLGPEAPQPR--PATLFVCVERSPDALPVLQAL-------------DDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSA 870
            MRLRDG+ VR F+G +GEF+A V                  SG G R GR   +  GA +   L +E   R Q GI G         + P   L+FAPIRK RLK+LVEKA E+GAS L  V TA TQ+ A+ +AS+LD+L A TAVEA+EQCER+TVP +  P V LA  L    +        ++V L  +    R  P  +FVC ER  DA P+L+AL             D + +S  +        AFL+GPEGGF P+E+ ++A   FVR VSLG  VLR+ETAA+YALS WSA
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASP-VTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANA---AFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 296          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A1Q8FZS0_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FZS0_9PROT)

HSP 1 Score: 167 bits (424), Expect = 4.360e-47
Identity = 111/285 (38.95%), Postives = 157/285 (55.09%), Query Frame = 1
Query:   31 LHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPV---LQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAAC 876
            + T PRL++D+PL+ G +V LS E AH+L+ VMR  +GD VR FNG  GE+ A ++        A+ K A    AL +  Q RPQ G+P       WLLFAP+++T+ ++++EKATELG + +  V TA TQ   +     D+L   A EA+EQ ERL +P +      L  +L+ W  D  +                C E   DA       +     +A+ L G  G P  A L+GPEGGFSP E + + +LD V PV+LG  +LR+ETAA+ AL+ W +AC
Sbjct:    1 MSTDPRLFLDVPLSVGAAVPLSREDAHYLINVMRRGEGDVVRVFNGTDGEWSAVIA-------HASKKAA----ALTVGEQTRPQLGVPD-----LWLLFAPVKRTKTELIIEKATELGVAAICPVTTARTQSDRIR---FDRLQAIAKEAAEQTERLDLPEIR-DVEKLDKVLDAWPADREI--------------IFCDESGDDADEAWGGARGRGQPMATTLDGVGGRPA-AILIGPEGGFSPAERERLRALDHVIPVTLGPRILRAETAAIAALTIWQSAC 250          
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Match: A0A1J5SQ47_9ZZZZ (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SQ47_9ZZZZ)

HSP 1 Score: 167 bits (423), Expect = 5.970e-47
Identity = 114/284 (40.14%), Postives = 151/284 (53.17%), Query Frame = 1
Query:   46 RLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDSVRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPGEEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASVLDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAPQPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGGFSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAACARLGAAP 897
            RL+VD  LA G ++ L++EQAH+L+ VMR   G  V  FNG  GE+ A +   G + GR           L +ES  RPQ        P  WLLFAPI++TR+  + EKATELG S L  V T HT    M     ++L   A+EA+EQCERL+VP++  PA  L  LL GW  +                  + ++      PV +AL         G   P P A LVGPEGGF+  E++S+ +L F  PV LG  +LR++TAAL AL+C+ A C   G AP
Sbjct:    8 RLFVDAALAPGAALPLTAEQAHYLLSVMRAAAGTPVAVFNGRDGEWRARLEPAGRKGGR-----------LILESPSRPQ-----APEPDLWLLFAPIKRTRIDFIAEKATELGVSALQPVFTRHT---VMSRVNDERLRAIAIEAAEQCERLSVPQVR-PAAALDSLLAGWPSER---------------RLILLDEGGGGRPVAEAL---------GALPPGPAALLVGPEGGFAAAELESLRALPFTVPVGLGPRILRADTAALAALACYQALCGDGGLAP 247          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHN8_9STRA4.450e-5849.4316S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6H5K9Y9_9PHAE1.150e-5042.6816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
UPI00041500872.220e-4943.2716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A2S2CPY0_9PROT6.250e-4943.59Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI001A961B972.330e-4842.1816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
W9H021_9PROT6.000e-4841.11Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI001AEAA8372.060e-4742.1816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI4.030e-4743.6716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A1Q8FZS0_9PROT4.360e-4738.95Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1J5SQ47_9ZZZZ5.970e-4740.1416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1645536..1646441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score173.3
Seed ortholog evalue1.7e-40
Seed eggNOG ortholog1121033.AUCF01000019_gene3712
Preferred namersmE
KEGG koko:K09761
EggNOG free text desc.Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
EggNOG OGs1MXCU@1224,2JRPI@204441,2TS0N@28211,COG1385@1,COG1385@2
EC2.1.1.193
COG Functional cat.J
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size906
Cds size906
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.039381-CDS-S-ischiensis_contig10:1645535..16464411622815526.039381-CDS-S-ischiensis_contig10:1645535..1646441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1645536..1646441 -
1695739748.5231762-CDS-S-ischiensis_contig10:1645535..16464411695739748.5231762-CDS-S-ischiensis_contig10:1645535..1646441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1645536..1646441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1440.1prot_S-ischiensis_contig10.1440.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1645536..1646441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1440.1

>prot_S-ischiensis_contig10.1440.1 ID=prot_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=302bp
MKRTSSRQPPLHTTPRLYVDLPLAAGLSVALSSEQAHHLVKVMRLRDGDS
VRAFNGEHGEFVATVSGVGARSGRATGKGAHRETALHIESQLRPQDGIPG
EEPPGAWLLFAPIRKTRLKVLVEKATELGASCLVAVATAHTQEAAMEASV
LDKLATTAVEASEQCERLTVPRLLVPAVPLAHLLEGWAMDTVVPLGPEAP
QPRPATLFVCVERSPDALPVLQALDDLLASPLHGEEGPPPPAFLVGPEGG
FSPEEVQSMASLDFVRPVSLGANVLRSETAALYALSCWSAACARLGAAPP
GQ
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mRNA from alignment at S-ischiensis_contig10:1645536..1646441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1440.1 ID=mRNA_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig10:1645536..1646441- (Schizocladia ischiensis KU_0333)
ATGAAGCGGACCTCTTCGCGCCAGCCACCTTTGCACACGACACCCCGCTT GTACGTGGACCTCCCACTCGCCGCCGGCCTTTCCGTTGCACTGAGCAGCG AGCAGGCTCATCACCTTGTCAAGGTGATGCGCCTTCGCGATGGCGACAGC GTCCGCGCGTTCAACGGGGAGCATGGGGAGTTCGTGGCTACCGTGTCTGG AGTCGGGGCGCGCAGCGGCCGGGCCACAGGCAAAGGGGCACACCGGGAGA CCGCCCTCCACATCGAGTCCCAGCTGCGTCCGCAGGACGGCATCCCGGGT GAAGAACCTCCAGGCGCTTGGTTGCTCTTTGCCCCGATCCGCAAGACACG CCTCAAGGTTTTGGTGGAGAAAGCAACGGAGTTGGGCGCCTCGTGCCTGG TGGCGGTGGCAACCGCGCACACGCAGGAGGCGGCGATGGAGGCGTCCGTG CTGGACAAGTTGGCCACCACAGCGGTGGAGGCCTCTGAACAGTGCGAGCG CTTAACGGTCCCACGCCTGCTCGTCCCTGCTGTGCCACTTGCACACCTGC TGGAGGGCTGGGCCATGGACACAGTTGTTCCCCTGGGGCCCGAGGCACCT CAGCCTCGGCCTGCGACACTGTTTGTATGTGTGGAACGGTCCCCCGATGC CCTGCCTGTATTGCAGGCGCTAGATGACCTGCTTGCATCGCCCTTGCACG GGGAGGAAGGGCCGCCGCCGCCGGCCTTCCTGGTTGGACCTGAAGGGGGC TTCTCCCCCGAGGAGGTGCAGTCCATGGCTAGTTTGGACTTTGTGCGCCC AGTGTCCCTGGGCGCAAATGTCCTGCGGTCGGAGACAGCGGCGCTGTATG CTCTGAGCTGCTGGAGCGCGGCGTGTGCACGACTGGGGGCAGCGCCGCCG GGTCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1645536..1646441-

>mRNA_S-ischiensis_contig10.1440.1 ID=mRNA_S-ischiensis_contig10.1440.1|Name=mRNA_S-ischiensis_contig10.1440.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig10:1645536..1646441- (Schizocladia ischiensis KU_0333)
ATGAAGCGGACCTCTTCGCGCCAGCCACCTTTGCACACGACACCCCGCTT
GTACGTGGACCTCCCACTCGCCGCCGGCCTTTCCGTTGCACTGAGCAGCG
AGCAGGCTCATCACCTTGTCAAGGTGATGCGCCTTCGCGATGGCGACAGC
GTCCGCGCGTTCAACGGGGAGCATGGGGAGTTCGTGGCTACCGTGTCTGG
AGTCGGGGCGCGCAGCGGCCGGGCCACAGGCAAAGGGGCACACCGGGAGA
CCGCCCTCCACATCGAGTCCCAGCTGCGTCCGCAGGACGGCATCCCGGGT
GAAGAACCTCCAGGCGCTTGGTTGCTCTTTGCCCCGATCCGCAAGACACG
CCTCAAGGTTTTGGTGGAGAAAGCAACGGAGTTGGGCGCCTCGTGCCTGG
TGGCGGTGGCAACCGCGCACACGCAGGAGGCGGCGATGGAGGCGTCCGTG
CTGGACAAGTTGGCCACCACAGCGGTGGAGGCCTCTGAACAGTGCGAGCG
CTTAACGGTCCCACGCCTGCTCGTCCCTGCTGTGCCACTTGCACACCTGC
TGGAGGGCTGGGCCATGGACACAGTTGTTCCCCTGGGGCCCGAGGCACCT
CAGCCTCGGCCTGCGACACTGTTTGTATGTGTGGAACGGTCCCCCGATGC
CCTGCCTGTATTGCAGGCGCTAGATGACCTGCTTGCATCGCCCTTGCACG
GGGAGGAAGGGCCGCCGCCGCCGGCCTTCCTGGTTGGACCTGAAGGGGGC
TTCTCCCCCGAGGAGGTGCAGTCCATGGCTAGTTTGGACTTTGTGCGCCC
AGTGTCCCTGGGCGCAAATGTCCTGCGGTCGGAGACAGCGGCGCTGTATG
CTCTGAGCTGCTGGAGCGCGGCGTGTGCACGACTGGGGGCAGCGCCGCCG
GGTCAGATGAAGCGGACCTCTTCGCGCCAGCCACCTTTGCACACGACACC
CCGCTTGTACGTGGACCTCCCACTCGCCGCCGGCCTTTCCGTTGCACTGA
GCAGCGAGCAGGCTCATCACCTTGTCAAGGTGATGCGCCTTCGCGATGGC
GACAGCGTCCGCGCGTTCAACGGGGAGCATGGGGAGTTCGTGGCTACCGT
GTCTGGAGTCGGGGCGCGCAGCGGCCGGGCCACAGGCAAAGGGGCACACC
GGGAGACCGCCCTCCACATCGAGTCCCAGCTGCGTCCGCAGGACGGCATC
CCGGGTGAAGAACCTCCAGGCGCTTGGTTGCTCTTTGCCCCGATCCGCAA
GACACGCCTCAAGGTTTTGGTGGAGAAAGCAACGGAGTTGGGCGCCTCGT
GCCTGGTGGCGGTGGCAACCGCGCACACGCAGGAGGCGGCGATGGAGGCG
TCCGTGCTGGACAAGTTGGCCACCACAGCGGTGGAGGCCTCTGAACAGTG
CGAGCGCTTAACGGTCCCACGCCTGCTCGTCCCTGCTGTGCCACTTGCAC
ACCTGCTGGAGGGCTGGGCCATGGACACAGTTGTTCCCCTGGGGCCCGAG
GCACCTCAGCCTCGGCCTGCGACACTGTTTGTATGTGTGGAACGGTCCCC
CGATGCCCTGCCTGTATTGCAGGCGCTAGATGACCTGCTTGCATCGCCCT
TGCACGGGGAGGAAGGGCCGCCGCCGCCGGCCTTCCTGGTTGGACCTGAA
GGGGGCTTCTCCCCCGAGGAGGTGCAGTCCATGGCTAGTTTGGACTTTGT
GCGCCCAGTGTCCCTGGGCGCAAATGTCCTGCGGTCGGAGACAGCGGCGC
TGTATGCTCTGAGCTGCTGGAGCGCGGCGTGTGCACGACTGGGGGCAGCG
CCGCCGGGTCAG
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