|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2011 |
| Cds size | 1047 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815497.3263266-UTR-S-ischiensis_contig10:1623760..1624407 | 1622815497.3263266-UTR-S-ischiensis_contig10:1623760..1624407 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1623761..1624407 - |
| 1695739735.066219-UTR-S-ischiensis_contig10:1623760..1624407 | 1695739735.066219-UTR-S-ischiensis_contig10:1623760..1624407 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1623761..1624407 - |
| 1622815497.3631835-UTR-S-ischiensis_contig10:1624558..1624758 | 1622815497.3631835-UTR-S-ischiensis_contig10:1624558..1624758 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1624559..1624758 - |
| 1695739735.0763965-UTR-S-ischiensis_contig10:1624558..1624758 | 1695739735.0763965-UTR-S-ischiensis_contig10:1624558..1624758 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1624559..1624758 - |
| 1622815497.4191222-UTR-S-ischiensis_contig10:1628260..1628377 | 1622815497.4191222-UTR-S-ischiensis_contig10:1628260..1628377 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1628261..1628377 - |
| 1695739735.125494-UTR-S-ischiensis_contig10:1628260..1628377 | 1695739735.125494-UTR-S-ischiensis_contig10:1628260..1628377 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 1628261..1628377 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815497.375008-CDS-S-ischiensis_contig10:1624758..1624879 | 1622815497.375008-CDS-S-ischiensis_contig10:1624758..1624879 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1624759..1624879 - |
| 1695739735.0856586-CDS-S-ischiensis_contig10:1624758..1624879 | 1695739735.0856586-CDS-S-ischiensis_contig10:1624758..1624879 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1624759..1624879 - |
| 1622815497.385198-CDS-S-ischiensis_contig10:1626123..1626455 | 1622815497.385198-CDS-S-ischiensis_contig10:1626123..1626455 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1626124..1626455 - |
| 1695739735.094524-CDS-S-ischiensis_contig10:1626123..1626455 | 1695739735.094524-CDS-S-ischiensis_contig10:1626123..1626455 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1626124..1626455 - |
| 1622815497.396082-CDS-S-ischiensis_contig10:1627542..1627903 | 1622815497.396082-CDS-S-ischiensis_contig10:1627542..1627903 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1627543..1627903 - |
| 1695739735.1036499-CDS-S-ischiensis_contig10:1627542..1627903 | 1695739735.1036499-CDS-S-ischiensis_contig10:1627542..1627903 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1627543..1627903 - |
| 1622815497.4086444-CDS-S-ischiensis_contig10:1628027..1628260 | 1622815497.4086444-CDS-S-ischiensis_contig10:1628027..1628260 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1628028..1628260 - |
| 1695739735.1129434-CDS-S-ischiensis_contig10:1628027..1628260 | 1695739735.1129434-CDS-S-ischiensis_contig10:1628027..1628260 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 1628028..1628260 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1438.1 >prot_S-ischiensis_contig10.1438.1 ID=prot_S-ischiensis_contig10.1438.1|Name=mRNA_S-ischiensis_contig10.1438.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=349bp
MTGGSAFGPETAEQQMSVAEDVLTSFSLGGAAQASWSGLRALLRDHHPNS
SLHLLETTLFIAFLTLLFGWHLKSKRERQQCTQERSSPSCPQQQPRDICE
VFQGLPRSTSATGSFYDFSPLIEADKEFETEPGEASWTSGSDTGELSTEE
LGDCDTGDLGWAEARLLAHSRAYKPPLPPRSRKKGRSARGANQEATVPGP
LDGSGRSIRQPSFSGRGGRVLKRSLSADAGTRMRMGRTSHTAPRPKPRLW
NRRFRSARLLETGHSESDESADDAGDKCPLMKQACARPEVLEGHMVRVKG
QGEGMILRRIRRRGRQTKFEVIFTDGQLHKLALKRSDSKGHVPFTLLP* back to topmRNA from alignment at S-ischiensis_contig10:1623761..1628377- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig10.1438.1 ID=mRNA_S-ischiensis_contig10.1438.1|Name=mRNA_S-ischiensis_contig10.1438.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4617bp|location=Sequence derived from alignment at S-ischiensis_contig10:1623761..1628377- (Schizocladia ischiensis KU_0333)
GCGAAGCCCAGGAGAAGCAAAAGAAGTTGTGTCGAGCGGCCCTTTGTCCC
TCCCAGCCGAGCCGGGAGGTTCGGGAGCGTCTCAAAGCTCTTTTTGCCTG
GTCTACCCCTGTCTCTGATGACGGGAGGAAGCGCGTTTGGGCCCGAGACT
GCAGAGCAACAGATGTCAGTGGCCGAGGATGTGTTGACATCTTTTTCTCT
CGGAGGGGCTGCCCAAGCTTCATGGAGCGGCCTCCGGGCTTTGCTGCGGG
ACCATCACCCAAACTCCTCCCTTCACCTGCTGGAGACCACTCTCTTCATC
GCCTTCCTCACCCTGCTCTTCGGCTGGCACCTTAAAAGCAAACGGGAGAG
GTGCGCACCTCTTGCTGGGCGTCTGCTCGTTGACTTCTCCTTGGCATCTC
GAGCGCCTCCTACGCATCAGAATCCCATGTTCGCCGCTCAACCTCAGCTC
TGGACGCAACCCCAATTTCCACAGGCAACAGTGCACGCAGGAGCGCTCGA
GTCCTTCGTGTCCGCAGCAGCAGCCTCGAGATATTTGCGAGGTGTTCCAG
GGCTTGCCAAGAAGCACCAGTGCCACTGGTTCGTTCTACGACTTCTCCCC
GTTAATTGAAGCGGACAAGGAGTTTGAAACAGAACCGGGCGAGGCTTCTT
GGACGTCCGGCTCTGACACAGGCGAATTGTCCACTGAGGAGCTTGGCGAT
TGCGACACCGGCGACCTGGGCTGGGCAGAAGCTCGGTTGTTAGCACACTC
AAGGGCATACAAGCCACCCCTGCCCCCACGGAGCCGCAAGAAAGGCCGGT
CTGCCCGGGGCGCCAACCAGGAAGCCACTGTTCCGGTGTGTATTTTGGCA
GATGCGCTCGAATGTCTTCTCAAGTGGGATTGGACGGAATTAGAATCTTC
CTATGAAAAAGATGGCTACCGTCTCAGGCGCCTTTTTATTTGCCAAGTAT
GGCTTGCGTTCCAAAATACTCAAACCTTTCCCGGGGCTTTTGCTGATCCC
TAGAAGGGTCGCTGGCTTGTCTGCTGCCGTGAAGAATGTGAGATTTGTGT
ATACTCATGTCGGACAGGGGACACCCTTTCCTGTGCGTGCCACCGACCGT
CAGCCCAGTATACTACTTGCTGGACCGCCGGCCAGCCCCCGCAGCGTAGC
CCTTAGGCCATTGGCCTGACGTCCGCTTGACGGAGCGTAAGTTTCCGGTT
TCTCGCCGGACAGGCGTGTGTCGCACACCGATCCCAGCTTGCGATTGTGT
GTGTGTGTACTCACGGGGGACAGGGGACAGCCCGTCATTGTGTCGTCGTC
ATTGTGTACACAAGTAAAGAAACTGTTAAGAGAGGGCAGTTCCTCGTGCC
CTTCTCACACAAGTACTGTGCAGCCCCCCCTCTTTGACCCTCCAAAGCAG
CCTCGTTCGTCTACGGAACACCGCACATAGGTTGCGTCCATCTGGCCCCG
ACTATGCTTAGGTACCACTCACCATGCATGCGGACATACAACAGTAGCAC
TCGGTGGCATGGCATTAGTGCTCATTCCCCGTGTTGCTCCCTGCACTCTG
AACCTTGGGTGGACGATACTGCACTAGTCTATAGGTGTTTGAGGGAAGAC
TTGCTGTGCACGTCCTCTATATGGGTTGATCCCTTCGGGTCCCGGGGTGT
GCCGTATAAAAGTACTCGAATATGCATTTACTAAGCCTCACATGGCTTGC
CAAAGTGGGCCGTATCGCACTCTAAACACAGTGCAATCCTTCCAGGACAA
ACAGCTACTGTGCACTGTTTTTTATGCCCTTGAGCTTCAGCTTTCCGGGA
GCCAAAGGGGGCGTGGTGCTCTGTCCAGCGTGTGCCCAAGCTCACCCCCC
CCGCGCCTCCCTGTTCCTCGCCCGTTCCTCGCCCCCTCTGTGCAACCACC
GGTAAAATTTCCCCCACCACAGGGGCCATTGGACGGCTCGGGGAGGAGCA
TCCGACAGCCGTCATTCTCAGGGCGGGGGGGGCGTGTGCTCAAGAGGAGC
CTGAGCGCCGACGCAGGCACCAGAATGCGTATGGGACGTACGAGCCACAC
GGCGCCTCGCCCAAAGCCCCGCTTGTGGAATCGCCGGTTCCGCAGCGCGC
GCCTCCTGGAGACGGGCCACAGCGAAAGCGACGAAAGCGCGGACGACGCA
GGCGACAAGTGCCCGCTAATGAAGCAGGCGTGTGCGCGCCCAGAGGTGCT
GGAGGGGCACATGGTCCGGGTAAAGGGCCAGGGCGAGGGCATGATCTTGC
GCAGGTGAGAGACTGGGGTGGGGGCCGGGCGGGGGCGGAGTGCAGCGGGA
GGCGGTGTCTCCAGCATGTGTGTTTTTTCGGTTACCCTTGCGTGTTGGCG
GCGTCGTGCCCCGGTATATGCACTCGCGTTGTCTGTCGTAATCCCGAGAC
CATTGACCACGCGCCTCGATCGAGATGGAGCAGTCCCCCTCCCTCCCCTG
GCATACTCGTATAGTAGGAATCACTTCAAAAGCAATATGTGTCCGTGATC
GTATAGAGCATATCCGTGCTGGGGGCCCAAGCTGTAGCCTCTTACTGTTT
TGTCCGGTTTGTCCTCCGAAATGGGGCCCACAAGTACTGCGGCCGCTACA
CCAGTTGGTGTCATACCAGTGTCTGCGTTGGAGCCCTTCATGCTCTTTCG
ATGCATGGTGCCGCTTGCCGCTGCCCGTCAGCTCGGCGGTATCATGCCAA
CCGCTTGCCAGCTGCAGTAATGGCAGCCCCCAGTAGTTTCCATGCCGTAG
CCATGGGCTACAACCCATGTACTTTGAAGTACTGTATAGTCACATTGTGC
TTGCCAAAGCCCAGCGACCGTTGACTGTTCGCGCTCTTTGGAGTTTGCAT
CGATTGCACCGTATTGCAACCGCGGTACATGTATGGTCAGTGGGCCAGGC
AGGGCACGTACTTCGCAACTTAGCAGGGTTTGCGCTGGCCAGGCTCGGGA
CCCTCGTGGGAAAACGCCCCGCGTCAGGCGTGATGAGAGCTGCAACGCAC
TTTGTAGTGCCGCCTGAATGTGTGTTGCCTTACGCCACAGCATGGTACTT
AGCTCTTTGTACAGTGCTCGGCTATGGGTTGTTTTTCACGCATCACTTGC
ATCGCTTTCCGCTTGAGTGAGACACGCTGGTTTTCTTCTGTTTGTTGCGG
GCTCCTGGCCGTGGAGTTTTGCGCCATGGTACCTGCTGACCTGTTCCACT
GGTCACAGAACTATTGCAGTGGTTTGAATACTGCGTACCAAGCAAATGCA
GTTCGTCTGCTAATGTTCTCCCAGTGAAATATAATACTTCGAAGTGCTGT
ACTAGCATTGCCAGGAAGACACAGGGCGAGGTGCAGCCACGTCACTAAAG
ACCTCAACAGTGGCCCTCCTTTAGCTCGCCAGGGAAGTACTACTGTACAG
TACTACTTAGTAGTAGTGCGGTGCTGACGTGCTGATTTCGGCTTGCGATG
CATTGACGTACTGGCATTCTCCCTTGTTTGCCCTCGGCCGTGGAACAGGA
TCCGACGGCGAGGAAGGCAGACCAAGTTTGAGGTGATCTTCACAGACGGT
CAACTGCACAAGCTGGCCCTCAAGCGCAGCGACTCCAAGGGCCACGTGCC
CTTCACTCTGCTGCCCTGATCAGCCCCTGTCTACACGCGCTGTAGTCTGT
ATGAAGCATCTAGGAGTAGTAAGAAATTTTAATACTATTTTGTACATTTA
CTGTATGTTGGCGGCCCGGGCGTCCTGGAGGATAAGTACCTGAGCGCGAT
AGAGCGTGGAAAACGAACCCCAGGCAAGCTGAGTCGACCGCGCTTTTCTG
GTAAGACCTCTGACTTCCAGTCCTGGGAGGAACAGTACCTGAGCGCGATA
GATTACCAGACACTCGCATATGATCGGAAAGGCTTGGGCGGGGCGGCCTC
CACAGTGCCGCCGAGGAGCTCTGTCAGACGTGTCTGGTAATCTATCGCGC
TCAGATACTGTTCCTTCCAGGATGGGAACTCAGCTTGCCCTATGGGTTCG
TTTTCCGCGCTCCAAACTTGGAGGAAGCCGGCCACCCCGGAGGCATGCAC
AGGATGGGGTAGCTGTCGTACCTGTCTGGCATGAGTGAACACACACACAT
TTATATAGGGTACTGTGCGAGTAGTCGTTCAATTTTTGCCTTCGCCAATG
AAGTTGAGGTTGCGCTGGAAGGATTGGAGTGCACCGGAATTTTGCCATTG
GTCTTGCCGAATGGGCATCAGGATGTGTTTAGTACTTCGAAGTAGCTCTT
ACGTCCGTATCACACGTCCCGATAGATATTCAACCCCGGATCGGCCCAAT
TCCTGAATCTGGGGTGCCTTGTGGGCCCTGAAATTTCTCAGGCTGTAGCA
GGCATGTCAAGTAGAAGTTGGTCCCGGGGTCTGTGAAGGAGAAGCCTTGC
CCCAAGAAGAATGGGAGCTGAGAGCTACACCTTCATTGTCAATGAGTATT
ATATACTTGGAAGTACTACGCAGTACTCGTACTCATAGATTGAGGCGGAT
GGGGTCGGGCTTGCTGGTAGTTCGACCAGCAGCCTCCACCTTACATCTTC
CAGCAACTGGAACACTGAGCCCACGGGGCCCAAAATACACCGAAAATGGC
ATATTCCCCTAAACGCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig10:1623761..1628377- >mRNA_S-ischiensis_contig10.1438.1 ID=mRNA_S-ischiensis_contig10.1438.1|Name=mRNA_S-ischiensis_contig10.1438.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2094bp|location=Sequence derived from alignment at S-ischiensis_contig10:1623761..1628377- (Schizocladia ischiensis KU_0333)
ATGACGGGAGGAAGCGCGTTTGGGCCCGAGACTGCAGAGCAACAGATGTC
AGTGGCCGAGGATGTGTTGACATCTTTTTCTCTCGGAGGGGCTGCCCAAG
CTTCATGGAGCGGCCTCCGGGCTTTGCTGCGGGACCATCACCCAAACTCC
TCCCTTCACCTGCTGGAGACCACTCTCTTCATCGCCTTCCTCACCCTGCT
CTTCGGCTGGCACCTTAAAAGCAAACGGGAGAGATGACGGGAGGAAGCGC
GTTTGGGCCCGAGACTGCAGAGCAACAGATGTCAGTGGCCGAGGATGTGT
TGACATCTTTTTCTCTCGGAGGGGCTGCCCAAGCTTCATGGAGCGGCCTC
CGGGCTTTGCTGCGGGACCATCACCCAAACTCCTCCCTTCACCTGCTGGA
GACCACTCTCTTCATCGCCTTCCTCACCCTGCTCTTCGGCTGGCACCTTA
AAAGCAAACGGGAGAGGCAACAGTGCACGCAGGAGCGCTCGAGTCCTTCG
TGTCCGCAGCAGCAGCCTCGAGATATTTGCGAGGTGTTCCAGGGCTTGCC
AAGAAGCACCAGTGCCACTGGTTCGTTCTACGACTTCTCCCCGTTAATTG
AAGCGGACAAGGAGTTTGAAACAGAACCGGGCGAGGCTTCTTGGACGTCC
GGCTCTGACACAGGCGAATTGTCCACTGAGGAGCTTGGCGATTGCGACAC
CGGCGACCTGGGCTGGGCAGAAGCTCGGTTGTTAGCACACTCAAGGGCAT
ACAAGCCACCCCTGCCCCCACGGAGCCGCAAGAAAGGCCGGTCTGCCCGG
GGCGCCAACCAGGAAGCCACTGTTCCGGCAACAGTGCACGCAGGAGCGCT
CGAGTCCTTCGTGTCCGCAGCAGCAGCCTCGAGATATTTGCGAGGTGTTC
CAGGGCTTGCCAAGAAGCACCAGTGCCACTGGTTCGTTCTACGACTTCTC
CCCGTTAATTGAAGCGGACAAGGAGTTTGAAACAGAACCGGGCGAGGCTT
CTTGGACGTCCGGCTCTGACACAGGCGAATTGTCCACTGAGGAGCTTGGC
GATTGCGACACCGGCGACCTGGGCTGGGCAGAAGCTCGGTTGTTAGCACA
CTCAAGGGCATACAAGCCACCCCTGCCCCCACGGAGCCGCAAGAAAGGCC
GGTCTGCCCGGGGCGCCAACCAGGAAGCCACTGTTCCGGGGCCATTGGAC
GGCTCGGGGAGGAGCATCCGACAGCCGTCATTCTCAGGGCGGGGGGGGCG
TGTGCTCAAGAGGAGCCTGAGCGCCGACGCAGGCACCAGAATGCGTATGG
GACGTACGAGCCACACGGCGCCTCGCCCAAAGCCCCGCTTGTGGAATCGC
CGGTTCCGCAGCGCGCGCCTCCTGGAGACGGGCCACAGCGAAAGCGACGA
AAGCGCGGACGACGCAGGCGACAAGTGCCCGCTAATGAAGCAGGCGTGTG
CGCGCCCAGAGGTGCTGGAGGGGCACATGGTCCGGGTAAAGGGCCAGGGC
GAGGGCATGATCTTGCGCAGGGGCCATTGGACGGCTCGGGGAGGAGCATC
CGACAGCCGTCATTCTCAGGGCGGGGGGGGCGTGTGCTCAAGAGGAGCCT
GAGCGCCGACGCAGGCACCAGAATGCGTATGGGACGTACGAGCCACACGG
CGCCTCGCCCAAAGCCCCGCTTGTGGAATCGCCGGTTCCGCAGCGCGCGC
CTCCTGGAGACGGGCCACAGCGAAAGCGACGAAAGCGCGGACGACGCAGG
CGACAAGTGCCCGCTAATGAAGCAGGCGTGTGCGCGCCCAGAGGTGCTGG
AGGGGCACATGGTCCGGGTAAAGGGCCAGGGCGAGGGCATGATCTTGCGC
AGGATCCGACGGCGAGGAAGGCAGACCAAGTTTGAGGTGATCTTCACAGA
CGGTCAACTGCACAAGCTGGCCCTCAAGCGCAGCGACTCCAAGGGCCACG
TGCCCTTCACTCTGCTGCCCTGAGATCCGACGGCGAGGAAGGCAGACCAA
GTTTGAGGTGATCTTCACAGACGGTCAACTGCACAAGCTGGCCCTCAAGC
GCAGCGACTCCAAGGGCCACGTGCCCTTCACTCTGCTGCCCTGA back to top
|