mRNA_S-ischiensis_contig10.1416.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1416.1
Unique NamemRNA_S-ischiensis_contig10.1416.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1416.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.000e-28
Identity = 94/261 (36.02%), Postives = 117/261 (44.83%), Query Frame = 1 
Query:  271 MGTAQFTNPAETLARLDGALRCPERAVLGSVLVAATALVEQTKRV-------------PGATGHGTRGPTPKW------------------WMQWKPLLCRVILAKHLRPMRQAAKRLLRRLCGTQSCYHGVRDSYLFSAELRFILDALPP-GLLASVEAALSPRGGVVSSPVPGAPGPAAATGTAATLGGHVGGWTDTG--------------------------EDLPYTTQVSLHRSLNSLLRVGRTRPGNWQRFCSL 879
            M  A F  PAE L RL   LR P  AVL S +  ATAL   ++R+             P A      G  PK                     +WK LLC +I  + ++ +R  AKRLLRRLC TQ+ YHGVRDSY F+AELR +L +LPP    A+ EA   P     SS           + T    G   G W D                            ++LPYTTQV+LHRSL SLL V   RP NW+R+C++
Sbjct: 4513 MRRAAFRTPAEGLTRLGAILRVPSMAVLASAVQLATALASMSRRLERMAAGGESWGAPPNAAPTADSGERPKHPQTSSPPTAEVMRRRHKGLTEWKALLCTLIADREVKSLRHDAKRLLRRLCVTQAAYHGVRDSYQFTAELRKVLHSLPPRAARAACEALRDPAAAAGSS-----------SSTRDARGKKRGRWDDAPPCSGQGVAFAXXXXXXXXXXXXGSDVDELPYTTQVALHRSLTSLLHVAEMRPTNWRRYCAV 4762
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BLAST of mRNA_S-ischiensis_contig10.1416.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.540e-28
Identity = 95/261 (36.40%), Postives = 119/261 (45.59%), Query Frame = 1 
Query:  271 MGTAQFTNPAETLARLDGALRCPERAVLGSVLVAATALVEQTKRV-------------PGATGHGTRGPTPKW------------------WMQWKPLLCRVILAKHLRPMRQAAKRLLRRLCGTQSCYHGVRDSYLFSAELRFILDALPP-GLLASVEAALSPRGGVVSSPVPGAPGPAAATGTAATLGGHVGGWTD----TGE----------------------DLPYTTQVSLHRSLNSLLRVGRTRPGNWQRFCSL 879
            M  A F  PAE L RL   LR P  AVL S +  ATAL   ++R+             P A      G  PK                     +WK LLC +I  + ++ +R  AKRLLRRLC TQ+ YHGVRDSY F+AELR +L +LPP    A+ EA   P     SS           + T    G   G W D    +G+                      +LPYTTQV+LHRSL SLL V   RP NW+R+C++
Sbjct: 5073 MRKAAFRTPAEGLTRLGAILRVPAMAVLASTIQLATALASMSRRLEKMAAGGESWEAPPNAAPTADSGECPKHPQTSSPPTAEVMGRRHKGLTEWKALLCTLIADREVKSLRHDAKRLLRRLCVTQAAYHGVRDSYQFTAELRKVLHSLPPRAARAACEALRDPAAAAGSS-----------SSTRDARGKKRGRWDDAPPCSGQGVASXXXXXXXXXXXXXXXXXXELPYTTQVALHRSLTSLLHVAEMRPTNWRRYCAV 5322
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI3.000e-2836.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE5.540e-2836.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1498180..1500289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal peptide
Exons3
Model size968
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1416.1prot_S-ischiensis_contig10.1416.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1498180..1500288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.760831-CDS-S-ischiensis_contig10:1498179..14985801622815522.760831-CDS-S-ischiensis_contig10:1498179..1498580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1498180..1498580 +
1695739747.1713746-CDS-S-ischiensis_contig10:1498179..14985801695739747.1713746-CDS-S-ischiensis_contig10:1498179..1498580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1498180..1498580 +
1622815522.772264-CDS-S-ischiensis_contig10:1498858..14990121622815522.772264-CDS-S-ischiensis_contig10:1498858..1499012Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1498859..1499012 +
1695739747.181337-CDS-S-ischiensis_contig10:1498858..14990121695739747.181337-CDS-S-ischiensis_contig10:1498858..1499012Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1498859..1499012 +
1622815522.7851937-CDS-S-ischiensis_contig10:1499877..15002881622815522.7851937-CDS-S-ischiensis_contig10:1499877..1500288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1499878..1500288 +
1695739747.1894217-CDS-S-ischiensis_contig10:1499877..15002881695739747.1894217-CDS-S-ischiensis_contig10:1499877..1500288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1499878..1500288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1416.1

>prot_S-ischiensis_contig10.1416.1 ID=prot_S-ischiensis_contig10.1416.1|Name=mRNA_S-ischiensis_contig10.1416.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=322bp
GPGAATAAAAAAAAAAAATAAATAATDASGEPVASTEASAPTKKSRAKSK
TRGQSKSQANSRGGSGSKDGDPAAKSAAGGSGRTEEGGPRMGTAQFTNPA
ETLARLDGALRCPERAVLGSVLVAATALVEQTKRVPGATGHGTRGPTPKW
WMQWKPLLCRVILAKHLRPMRQAAKRLLRRLCGTQSCYHGVRDSYLFSAE
LRFILDALPPGLLASVEAALSPRGGVVSSPVPGAPGPAAATGTAATLGGH
VGGWTDTGEDLPYTTQVSLHRSLNSLLRVGRTRPGNWQRFCSLPCLPDLE
DACSPQALSPEEGSQASVNTGA
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mRNA from alignment at S-ischiensis_contig10:1498180..1500289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1416.1 ID=mRNA_S-ischiensis_contig10.1416.1|Name=mRNA_S-ischiensis_contig10.1416.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2110bp|location=Sequence derived from alignment at S-ischiensis_contig10:1498180..1500289+ (Schizocladia ischiensis KU_0333)
GGGCCAGGGGCGGCAACTGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAACGGCAGCGGCGACGGCGGCAACCGATGCGTCCGGTGAGCCCGTCG
CTTCTACCGAAGCCTCCGCGCCCACCAAGAAGAGCCGGGCCAAGTCCAAG
ACCAGGGGTCAGAGCAAGAGCCAGGCGAATTCCCGAGGAGGGTCTGGATC
GAAAGATGGCGACCCTGCCGCAAAATCTGCGGCGGGGGGCTCGGGCCGCA
CGGAAGAGGGCGGCCCACGAATGGGAACAGCGCAGTTCACCAACCCTGCG
GAGACGCTGGCGAGGCTGGATGGCGCGCTGCGGTGCCCTGAGCGGGCGGT
GCTGGGGTCGGTGCTGGTGGCGGCGACGGCGCTCGTGGAGCAAACGAAGA
GGTGAGGAGGAGAGGGGGTGGACGAGTTGAGACTGGAGGCGGAGGGGGAG
GAGGAGGAGGAGCAGCAGGGGAGGAGGGAGGGGGGAGGGGGGACAAAACG
CACAAGCGGGGAGCTAGAGCTCTAGCAATAGTGTACGGGGTTGCTACCAT
GGGCCACAAGCGACTCATCGCCAGGCAGACATCTCCGCTGACTGCATCCT
GTCCACCTGGCGCGTCTGTGCCCCCCCCCCAAAACACACGGCCACCCTGT
CATCTGCCGATCCTCCCTGCCGCAAACAGGGTTCCTGGTGCCACTGGACA
CGGGACGCGCGGCCCCACGCCAAAGTGGTGGATGCAGTGGAAGCCGCTGC
TGTGCCGGGTCATCCTGGCCAAGCACCTGCGGCCCATGCGCCAGGCCGCC
AAGCGGCTCCTTCGCCGACTGTGTGGGACACAGGTGAGCCTGGCTGCCTG
CCTGCCTGCCTGCCTGCCTGCCTCCCTCCCTCCCTCCCTGCCTGCCTCCC
TCCCTGCCTGCTGGCCTGCTTGCCTGTTTGGCTGTTTGCCTGCTTGCTTG
CGGGCTCTTGCCTCTCAGAGAGAGGGAGAGGGGGGGGGTGGTGCTTGTGT
GACTGCCAGGCCTGTGTGACGCCTTGGGATGTGGGCGGTTTGAAGTACAC
ACTCTCTTTGTACTCTATGTTTGCTTGGGCACAGGCGGGCACCTGCCTTT
CTCCCTGTGTGCCCTGGTGTGTCCCATGCGTCCCCTGCTCGGCAACGAGG
CAGCCAGGCTAACGTGCTGTACAGACAGTCAACACATGGCGCCGTTTCGA
CTGGCCGTGCGCTGACTGTTGGAGTATTGCAGAGTACCCAAATACTACGT
AATACCAAGTTTGATGCCGGGAAATACCGTACTTGGGAGATCGTGTGCGT
AACGCGTGGCTCCCTCAGGAAGAATTCGACGCGTCACAGCAGTGCGGGAC
CTGATACCCCTTCGTTATCATGTGCTTCCGAGCAGCATCCTCTGTATTTC
CTTGCGGGAGTACGAGTACCCGCCTTGTGCTTGCCGTACTCCCGAGATCA
TGAACAAAGGTAGAGTGGTGCCTTGGAATAACACTCACCGCTGGAAGGAG
TGCGTTCATGCTTGGGGCCAGGAACCTGCTCCTCCGTGCACTTCAACACT
CCAATCCGACAGGTAAAAAATCCACTCCTGTGTGTGGTGTGGGTGTTCAT
TAAAGTGCAGGCCGTTTGAGTGCAACATTCGGCCCCTCTGTCCGGCTGTC
CATCCGCACACCGACTTCAACTATGTGTCCCCTCACCCCCATGGACAGAG
CTGCTACCACGGCGTGCGAGACAGCTACCTCTTCTCCGCAGAATTGCGAT
TCATCCTGGACGCTCTGCCTCCTGGGCTGCTCGCCTCCGTGGAGGCCGCC
TTGTCCCCCCGAGGAGGCGTTGTCTCCTCACCCGTGCCAGGCGCGCCGGG
GCCGGCGGCGGCGACAGGGACAGCAGCGACATTGGGGGGACACGTGGGAG
GGTGGACTGACACGGGGGAAGACCTGCCTTACACCACACAGGTGTCTCTG
CACAGGTCGCTCAACAGCCTGCTGCGCGTGGGGCGCACACGCCCGGGCAA
CTGGCAACGCTTCTGCTCGCTGCCCTGCCTCCCTGACCTGGAGGACGCCT
GCTCCCCGCAGGCTCTCAGCCCAGAGGAGGGCAGTCAGGCCTCGGTCAAC
ACGGGTGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1498180..1500289+

>mRNA_S-ischiensis_contig10.1416.1 ID=mRNA_S-ischiensis_contig10.1416.1|Name=mRNA_S-ischiensis_contig10.1416.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1932bp|location=Sequence derived from alignment at S-ischiensis_contig10:1498180..1500289+ (Schizocladia ischiensis KU_0333)
GGGCCAGGGGCGGCAACTGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAACGGCAGCGGCGACGGCGGCAACCGATGCGTCCGGTGAGCCCGTCG
CTTCTACCGAAGCCTCCGCGCCCACCAAGAAGAGCCGGGCCAAGTCCAAG
ACCAGGGGTCAGAGCAAGAGCCAGGCGAATTCCCGAGGAGGGTCTGGATC
GAAAGATGGCGACCCTGCCGCAAAATCTGCGGCGGGGGGCTCGGGCCGCA
CGGAAGAGGGCGGCCCACGAATGGGAACAGCGCAGTTCACCAACCCTGCG
GAGACGCTGGCGAGGCTGGATGGCGCGCTGCGGTGCCCTGAGCGGGCGGT
GCTGGGGTCGGTGCTGGTGGCGGCGACGGCGCTCGTGGAGCAAACGAAGA
GGGGCCAGGGGCGGCAACTGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAACGGCAGCGGCGACGGCGGCAACCGATGCGTCCGGTGAGCCCGTC
GCTTCTACCGAAGCCTCCGCGCCCACCAAGAAGAGCCGGGCCAAGTCCAA
GACCAGGGGTCAGAGCAAGAGCCAGGCGAATTCCCGAGGAGGGTCTGGAT
CGAAAGATGGCGACCCTGCCGCAAAATCTGCGGCGGGGGGCTCGGGCCGC
ACGGAAGAGGGCGGCCCACGAATGGGAACAGCGCAGTTCACCAACCCTGC
GGAGACGCTGGCGAGGCTGGATGGCGCGCTGCGGTGCCCTGAGCGGGCGG
TGCTGGGGTCGGTGCTGGTGGCGGCGACGGCGCTCGTGGAGCAAACGAAG
AGGGTTCCTGGTGCCACTGGACACGGGACGCGCGGCCCCACGCCAAAGTG
GTGGATGCAGTGGAAGCCGCTGCTGTGCCGGGTCATCCTGGCCAAGCACC
TGCGGCCCATGCGCCAGGCCGCCAAGCGGCTCCTTCGCCGACTGTGTGGG
ACACAGGGTTCCTGGTGCCACTGGACACGGGACGCGCGGCCCCACGCCAA
AGTGGTGGATGCAGTGGAAGCCGCTGCTGTGCCGGGTCATCCTGGCCAAG
CACCTGCGGCCCATGCGCCAGGCCGCCAAGCGGCTCCTTCGCCGACTGTG
TGGGACACAGAGCTGCTACCACGGCGTGCGAGACAGCTACCTCTTCTCCG
CAGAATTGCGATTCATCCTGGACGCTCTGCCTCCTGGGCTGCTCGCCTCC
GTGGAGGCCGCCTTGTCCCCCCGAGGAGGCGTTGTCTCCTCACCCGTGCC
AGGCGCGCCGGGGCCGGCGGCGGCGACAGGGACAGCAGCGACATTGGGGG
GACACGTGGGAGGGTGGACTGACACGGGGGAAGACCTGCCTTACACCACA
CAGGTGTCTCTGCACAGGTCGCTCAACAGCCTGCTGCGCGTGGGGCGCAC
ACGCCCGGGCAACTGGCAACGCTTCTGCTCGCTGCCCTGCCTCCCTGACC
TGGAGGACGCCTGCTCCCCGCAGGCTCTCAGCCCAGAGGAGGGCAGTCAG
GCCTCGGTCAACACGGGTGCCAGCTGCTACCACGGCGTGCGAGACAGCTA
CCTCTTCTCCGCAGAATTGCGATTCATCCTGGACGCTCTGCCTCCTGGGC
TGCTCGCCTCCGTGGAGGCCGCCTTGTCCCCCCGAGGAGGCGTTGTCTCC
TCACCCGTGCCAGGCGCGCCGGGGCCGGCGGCGGCGACAGGGACAGCAGC
GACATTGGGGGGACACGTGGGAGGGTGGACTGACACGGGGGAAGACCTGC
CTTACACCACACAGGTGTCTCTGCACAGGTCGCTCAACAGCCTGCTGCGC
GTGGGGCGCACACGCCCGGGCAACTGGCAACGCTTCTGCTCGCTGCCCTG
CCTCCCTGACCTGGAGGACGCCTGCTCCCCGCAGGCTCTCAGCCCAGAGG
AGGGCAGTCAGGCCTCGGTCAACACGGGTGCC
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