mRNA_S-ischiensis_contig10.1410.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1410.1
Unique NamemRNA_S-ischiensis_contig10.1410.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1410.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.630e-8
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 GGGGRGARFAPPFVTPVLAVLYENGSLQCFTSPAHLKAMEDAR 129
            G G  GA   PP+VTPVL VL++NGS+QC+TSPAHL A+E  R
Sbjct: 2975 GRGSYGAGHQPPYVTPVLMVLFDNGSVQCYTSPAHLTAVEKER 3017
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BLAST of mRNA_S-ischiensis_contig10.1410.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.380e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 GGRGARFAPPFVTPVLAVLYENGSLQCFTSPAHLKAMEDAR 129
            G  GA   PP+VTPVL  L++NGS+QC+TSPAHL A+E  R
Sbjct: 3168 GSYGAGHQPPYVTPVLMALFDNGSVQCYTSPAHLTAVEKER 3208
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI3.630e-862.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE2.380e-760.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1489205..1489397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.633944-CDS-S-ischiensis_contig10:1489204..14893961622815522.633944-CDS-S-ischiensis_contig10:1489204..1489396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1489205..1489396 +
1695739747.1591485-CDS-S-ischiensis_contig10:1489204..14893961695739747.1591485-CDS-S-ischiensis_contig10:1489204..1489396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1489205..1489396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1410.1prot_S-ischiensis_contig10.1410.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1489205..1489396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1410.1

>prot_S-ischiensis_contig10.1410.1 ID=prot_S-ischiensis_contig10.1410.1|Name=mRNA_S-ischiensis_contig10.1410.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=64bp
GGGGRGARFAPPFVTPVLAVLYENGSLQCFTSPAHLKAMEDARIGQLAAA
PVPATQPATPSSGT
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mRNA from alignment at S-ischiensis_contig10:1489205..1489397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1410.1 ID=mRNA_S-ischiensis_contig10.1410.1|Name=mRNA_S-ischiensis_contig10.1410.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=193bp|location=Sequence derived from alignment at S-ischiensis_contig10:1489205..1489397+ (Schizocladia ischiensis KU_0333)
GGTGGCGGTGGCCGTGGCGCACGCTTTGCCCCTCCTTTCGTCACGCCGGT
ACTGGCGGTGCTGTACGAGAACGGCAGCCTGCAGTGCTTCACCAGCCCTG
CGCACCTCAAGGCCATGGAGGACGCGCGCATTGGCCAGCTTGCGGCAGCG
CCGGTGCCGGCGACGCAGCCCGCCACGCCTTCCTCTGGTACGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1489205..1489397+

>mRNA_S-ischiensis_contig10.1410.1 ID=mRNA_S-ischiensis_contig10.1410.1|Name=mRNA_S-ischiensis_contig10.1410.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=384bp|location=Sequence derived from alignment at S-ischiensis_contig10:1489205..1489397+ (Schizocladia ischiensis KU_0333)
GGTGGCGGTGGCCGTGGCGCACGCTTTGCCCCTCCTTTCGTCACGCCGGT
ACTGGCGGTGCTGTACGAGAACGGCAGCCTGCAGTGCTTCACCAGCCCTG
CGCACCTCAAGGCCATGGAGGACGCGCGCATTGGCCAGCTTGCGGCAGCG
CCGGTGCCGGCGACGCAGCCCGCCACGCCTTCCTCTGGTACGGGTGGCGG
TGGCCGTGGCGCACGCTTTGCCCCTCCTTTCGTCACGCCGGTACTGGCGG
TGCTGTACGAGAACGGCAGCCTGCAGTGCTTCACCAGCCCTGCGCACCTC
AAGGCCATGGAGGACGCGCGCATTGGCCAGCTTGCGGCAGCGCCGGTGCC
GGCGACGCAGCCCGCCACGCCTTCCTCTGGTACG
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