mRNA_S-ischiensis_contig10.1407.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1407.1
Unique NamemRNA_S-ischiensis_contig10.1407.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 9.190e-21
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSFG 264
            DRSHLCVLS  AVGFDV+G+AFNPANER L VWG+RQCCVV ++  GV   R++V+LSFG
Sbjct: 2324 DRSHLCVLSSMAVGFDVIGVAFNPANERHLVVWGLRQCCVVILNSRGVALRRVQVNLSFG 2383          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.260e-20
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSFG 264
            DRSHLC+LS  AVGFDV+G+AFNPANER L VWG+RQCCVV ++  GV   R++V+LSFG
Sbjct: 2520 DRSHLCILSSMAVGFDVIGVAFNPANERHLVVWGLRQCCVVILNSRGVALRRVQVNLSFG 2579          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A8J4Q0K9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0K9_9MYCE)

HSP 1 Score: 62.4 bits (150), Expect = 2.890e-9
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            D+S   VLSK++VGF ++GL FNPANE+ LAV G+R+C ++ ++    +  +L +DLS 
Sbjct: 2134 DKSSFKVLSKSSVGFPIIGLVFNPANEKYLAVVGMRECKILTINHKEEIVDQLVIDLSL 2192          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A2R6X7S0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X7S0_MARPO)

HSP 1 Score: 55.8 bits (133), Expect = 5.810e-7
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            D++ +  LSK AV F++V LAFN ANE  LAV G   C V  V+P G V  RL V+LS 
Sbjct: 1884 DKTTVKPLSKNAVRFELVQLAFNSANESYLAVAGFEDCQVFTVNPRGEVTDRLAVELSL 1942          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: F0ZQG3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZQG3_DICPU)

HSP 1 Score: 55.5 bits (132), Expect = 7.940e-7
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            D+     LSK+AVG+ +V L FNPAN++ LAV G ++C ++ ++    +  +L +DLS 
Sbjct: 2257 DKHSFKALSKSAVGYPIVSLVFNPANDKFLAVVGFKECKILTINQKDEIVDQLSIDLSL 2315          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A8J2S518_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S518_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.770e-6
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   88 RSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVD 216
            R+    L++A   FD+VGLAFNP  +R +A WG+R CCVVA+D
Sbjct: 2196 RTACVALTRANTPFDLVGLAFNPCCDRHVACWGLRDCCVVALD 2238          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: F0Y2R4_AURAN (UBR-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2R4_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.170e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   88 RSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVD 216
            R+  C L + +V FDV G+AF P+++R LAVWG+R C V A+D
Sbjct: 2396 RAAACALGRLSVAFDVAGVAFCPSSDRHLAVWGLRDCSVFALD 2438          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A5N6QWA6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QWA6_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.450e-5
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            AD++++  LSK AV F++V LAFN   E  L+V G   C V+ ++P G V  RL ++L+ 
Sbjct: 1826 ADKTNVKPLSKNAVRFEIVHLAFNSVIENYLSVAGYEDCQVLTLNPRGEVTDRLAIELAL 1885          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A6A1VEW6_9ROSI (Auxin transport protein BIG n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VEW6_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.450e-5
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            AD++++  LS+ AV F++V LAFN   E  LAV G   C V+ ++P G V  RL ++L+ 
Sbjct: 1826 ADKTNVKPLSRNAVRFEIVHLAFNSVIENYLAVAGYEDCQVLTLNPRGEVTDRLAIELAL 1885          
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A2I4EB67_JUGRE (auxin transport protein BIG n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EB67_JUGRE)

HSP 1 Score: 50.8 bits (120), Expect = 3.360e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
            AD++ +  LSK AV F++V LAFN   E  LAV G   C V+ ++P G V  RL ++L+ 
Sbjct: 1831 ADKTIVKPLSKNAVRFEIVHLAFNSVIENYLAVAGYEDCQVLTLNPRGEVTDRLAIELAL 1890          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LLX0_ECTSI9.190e-2170.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE1.260e-2068.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J4Q0K9_9MYCE2.890e-945.76Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A2R6X7S0_MARPO5.810e-750.85Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
F0ZQG3_DICPU7.940e-738.98Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A8J2S518_9STRA2.770e-653.49Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0Y2R4_AURAN5.170e-651.16UBR-type domain-containing protein n=1 Tax=Aureoco... [more]
A0A5N6QWA6_9ROSI2.450e-541.67Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A6A1VEW6_9ROSI2.450e-541.67Auxin transport protein BIG n=1 Tax=Morella rubra ... [more]
A0A2I4EB67_JUGRE3.360e-543.33auxin transport protein BIG n=7 Tax=Juglandaceae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1486883..1487165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.546785-CDS-S-ischiensis_contig10:1486882..14871641622815522.546785-CDS-S-ischiensis_contig10:1486882..1487164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1486883..1487164 +
1695739747.1117122-CDS-S-ischiensis_contig10:1486882..14871641695739747.1117122-CDS-S-ischiensis_contig10:1486882..1487164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1486883..1487164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1407.1prot_S-ischiensis_contig10.1407.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1486883..1487164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1407.1

>prot_S-ischiensis_contig10.1407.1 ID=prot_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp
GGTAAAAVATGSVAREAPSLALASAPLADRSHLCVLSKAAVGFDVVGLAF
NPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSFGWGGGGG
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mRNA from alignment at S-ischiensis_contig10:1486883..1487165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1407.1 ID=mRNA_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=283bp|location=Sequence derived from alignment at S-ischiensis_contig10:1486883..1487165+ (Schizocladia ischiensis KU_0333)
GGGGGCACTGCGGCCGCGGCTGTAGCTACCGGCTCTGTGGCCCGCGAGGC CCCGTCCTTGGCCCTGGCCAGCGCGCCCCTGGCGGATCGCAGCCACTTGT GCGTGCTGTCCAAGGCGGCGGTGGGGTTTGACGTGGTTGGACTGGCGTTC AACCCGGCGAACGAGCGGGCCCTGGCCGTGTGGGGCGTGCGTCAGTGCTG TGTGGTGGCGGTGGACCCGCACGGCGTGGTTCAGGGCCGGCTCAAGGTTG ACCTCTCCTTTGGTTGGGGGGGCGGTGGCGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1486883..1487165+

>mRNA_S-ischiensis_contig10.1407.1 ID=mRNA_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig10:1486883..1487165+ (Schizocladia ischiensis KU_0333)
GGGGGCACTGCGGCCGCGGCTGTAGCTACCGGCTCTGTGGCCCGCGAGGC
CCCGTCCTTGGCCCTGGCCAGCGCGCCCCTGGCGGATCGCAGCCACTTGT
GCGTGCTGTCCAAGGCGGCGGTGGGGTTTGACGTGGTTGGACTGGCGTTC
AACCCGGCGAACGAGCGGGCCCTGGCCGTGTGGGGCGTGCGTCAGTGCTG
TGTGGTGGCGGTGGACCCGCACGGCGTGGTTCAGGGCCGGCTCAAGGTTG
ACCTCTCCTTTGGTTGGGGGGGCGGTGGCGGCGGGGGCACTGCGGCCGCG
GCTGTAGCTACCGGCTCTGTGGCCCGCGAGGCCCCGTCCTTGGCCCTGGC
CAGCGCGCCCCTGGCGGATCGCAGCCACTTGTGCGTGCTGTCCAAGGCGG
CGGTGGGGTTTGACGTGGTTGGACTGGCGTTCAACCCGGCGAACGAGCGG
GCCCTGGCCGTGTGGGGCGTGCGTCAGTGCTGTGTGGTGGCGGTGGACCC
GCACGGCGTGGTTCAGGGCCGGCTCAAGGTTGACCTCTCCTTTGGTTGGG
GGGGCGGTGGCGGC
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