mRNA_S-ischiensis_contig10.1407.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 9.190e-21 Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query: 85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSFG 264
DRSHLCVLS AVGFDV+G+AFNPANER L VWG+RQCCVV ++ GV R++V+LSFG
Sbjct: 2324 DRSHLCVLSSMAVGFDVIGVAFNPANERHLVVWGLRQCCVVILNSRGVALRRVQVNLSFG 2383
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.260e-20 Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query: 85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSFG 264
DRSHLC+LS AVGFDV+G+AFNPANER L VWG+RQCCVV ++ GV R++V+LSFG
Sbjct: 2520 DRSHLCILSSMAVGFDVIGVAFNPANERHLVVWGLRQCCVVILNSRGVALRRVQVNLSFG 2579
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A8J4Q0K9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0K9_9MYCE) HSP 1 Score: 62.4 bits (150), Expect = 2.890e-9 Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
D+S VLSK++VGF ++GL FNPANE+ LAV G+R+C ++ ++ + +L +DLS
Sbjct: 2134 DKSSFKVLSKSSVGFPIIGLVFNPANEKYLAVVGMRECKILTINHKEEIVDQLVIDLSL 2192
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A2R6X7S0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X7S0_MARPO) HSP 1 Score: 55.8 bits (133), Expect = 5.810e-7 Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
D++ + LSK AV F++V LAFN ANE LAV G C V V+P G V RL V+LS
Sbjct: 1884 DKTTVKPLSKNAVRFELVQLAFNSANESYLAVAGFEDCQVFTVNPRGEVTDRLAVELSL 1942
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: F0ZQG3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZQG3_DICPU) HSP 1 Score: 55.5 bits (132), Expect = 7.940e-7 Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 85 DRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
D+ LSK+AVG+ +V L FNPAN++ LAV G ++C ++ ++ + +L +DLS
Sbjct: 2257 DKHSFKALSKSAVGYPIVSLVFNPANDKFLAVVGFKECKILTINQKDEIVDQLSIDLSL 2315
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A8J2S518_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S518_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.770e-6 Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 88 RSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVD 216
R+ L++A FD+VGLAFNP +R +A WG+R CCVVA+D
Sbjct: 2196 RTACVALTRANTPFDLVGLAFNPCCDRHVACWGLRDCCVVALD 2238
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: F0Y2R4_AURAN (UBR-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2R4_AURAN) HSP 1 Score: 53.1 bits (126), Expect = 5.170e-6 Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 88 RSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVD 216
R+ C L + +V FDV G+AF P+++R LAVWG+R C V A+D
Sbjct: 2396 RAAACALGRLSVAFDVAGVAFCPSSDRHLAVWGLRDCSVFALD 2438
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A5N6QWA6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QWA6_9ROSI) HSP 1 Score: 51.2 bits (121), Expect = 2.450e-5 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
AD++++ LSK AV F++V LAFN E L+V G C V+ ++P G V RL ++L+
Sbjct: 1826 ADKTNVKPLSKNAVRFEIVHLAFNSVIENYLSVAGYEDCQVLTLNPRGEVTDRLAIELAL 1885
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A6A1VEW6_9ROSI (Auxin transport protein BIG n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VEW6_9ROSI) HSP 1 Score: 51.2 bits (121), Expect = 2.450e-5 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
AD++++ LS+ AV F++V LAFN E LAV G C V+ ++P G V RL ++L+
Sbjct: 1826 ADKTNVKPLSRNAVRFEIVHLAFNSVIENYLAVAGYEDCQVLTLNPRGEVTDRLAIELAL 1885
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Match: A0A2I4EB67_JUGRE (auxin transport protein BIG n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EB67_JUGRE) HSP 1 Score: 50.8 bits (120), Expect = 3.360e-5 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 82 ADRSHLCVLSKAAVGFDVVGLAFNPANERALAVWGVRQCCVVAVDPHGVVQGRLKVDLSF 261
AD++ + LSK AV F++V LAFN E LAV G C V+ ++P G V RL ++L+
Sbjct: 1831 ADKTIVKPLSKNAVRFEIVHLAFNSVIENYLAVAGYEDCQVLTLNPRGEVTDRLAIELAL 1890 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1407.1 >prot_S-ischiensis_contig10.1407.1 ID=prot_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp GGTAAAAVATGSVAREAPSLALASAPLADRSHLCVLSKAAVGFDVVGLAFback to top mRNA from alignment at S-ischiensis_contig10:1486883..1487165+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1407.1 ID=mRNA_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=283bp|location=Sequence derived from alignment at S-ischiensis_contig10:1486883..1487165+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:1486883..1487165+ >mRNA_S-ischiensis_contig10.1407.1 ID=mRNA_S-ischiensis_contig10.1407.1|Name=mRNA_S-ischiensis_contig10.1407.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig10:1486883..1487165+ (Schizocladia ischiensis KU_0333)back to top |