mRNA_S-ischiensis_contig10.1402.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1402.1
Unique NamemRNA_S-ischiensis_contig10.1402.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1483254..1483710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1182446-UTR-S-ischiensis_contig10:1483253..14832721622815503.1182446-UTR-S-ischiensis_contig10:1483253..1483272Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1483254..1483272 +
1695739737.5960221-UTR-S-ischiensis_contig10:1483253..14832721695739737.5960221-UTR-S-ischiensis_contig10:1483253..1483272Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1483254..1483272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1308494-CDS-S-ischiensis_contig10:1483272..14837101622815503.1308494-CDS-S-ischiensis_contig10:1483272..1483710Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1483273..1483710 +
1695739737.6069806-CDS-S-ischiensis_contig10:1483272..14837101695739737.6069806-CDS-S-ischiensis_contig10:1483272..1483710Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1483273..1483710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1402.1prot_S-ischiensis_contig10.1402.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1483273..1483710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1402.1

>prot_S-ischiensis_contig10.1402.1 ID=prot_S-ischiensis_contig10.1402.1|Name=mRNA_S-ischiensis_contig10.1402.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
MAAAVASHALDLCTSAQAALRSALLAAGAVAALACGGGGGGGGGGRDGLL
QPSPAPAAAASPATDASHQDPALAPVPAAAAAAAAVADMVALCGEIYAEQ
RFSPELLADARQTAKRLLGGGDAGAMDAVVRAWAVQRADAAVRWPG
back to top

mRNA from alignment at S-ischiensis_contig10:1483254..1483710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1402.1 ID=mRNA_S-ischiensis_contig10.1402.1|Name=mRNA_S-ischiensis_contig10.1402.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=457bp|location=Sequence derived from alignment at S-ischiensis_contig10:1483254..1483710+ (Schizocladia ischiensis KU_0333)
GGGGCAAGAAGAGGACGCCATGGCGGCCGCCGTCGCAAGCCACGCTCTGG
ACTTGTGCACGTCGGCTCAGGCCGCGCTGAGGAGCGCGCTACTAGCCGCG
GGGGCTGTGGCGGCCCTCGCCTGCGGTGGCGGCGGCGGCGGCGGCGGCGG
TGGCCGTGATGGGCTATTGCAGCCGTCTCCGGCCCCCGCTGCCGCTGCCT
CCCCCGCCACTGATGCCTCCCACCAAGACCCGGCGCTCGCGCCTGTCCCT
GCGGCGGCGGCGGCGGCAGCGGCGGTTGCGGACATGGTGGCGCTGTGCGG
CGAGATCTACGCGGAGCAACGGTTCTCGCCCGAGCTGCTTGCAGACGCTC
GTCAGACAGCCAAACGCCTCCTGGGCGGTGGCGACGCGGGGGCCATGGAC
GCCGTGGTGCGCGCATGGGCCGTGCAGCGCGCCGACGCCGCCGTGCGCTG
GCCCGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:1483254..1483710+

>mRNA_S-ischiensis_contig10.1402.1 ID=mRNA_S-ischiensis_contig10.1402.1|Name=mRNA_S-ischiensis_contig10.1402.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig10:1483254..1483710+ (Schizocladia ischiensis KU_0333)
ATGGCGGCCGCCGTCGCAAGCCACGCTCTGGACTTGTGCACGTCGGCTCA
GGCCGCGCTGAGGAGCGCGCTACTAGCCGCGGGGGCTGTGGCGGCCCTCG
CCTGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGGCCGTGATGGGCTATTG
CAGCCGTCTCCGGCCCCCGCTGCCGCTGCCTCCCCCGCCACTGATGCCTC
CCACCAAGACCCGGCGCTCGCGCCTGTCCCTGCGGCGGCGGCGGCGGCAG
CGGCGGTTGCGGACATGGTGGCGCTGTGCGGCGAGATCTACGCGGAGCAA
CGGTTCTCGCCCGAGCTGCTTGCAGACGCTCGTCAGACAGCCAAACGCCT
CCTGGGCGGTGGCGACGCGGGGGCCATGGACGCCGTGGTGCGCGCATGGG
CCGTGCAGCGCGCCGACGCCGCCGTGCGCTGGCCCGGCATGGCGGCCGCC
GTCGCAAGCCACGCTCTGGACTTGTGCACGTCGGCTCAGGCCGCGCTGAG
GAGCGCGCTACTAGCCGCGGGGGCTGTGGCGGCCCTCGCCTGCGGTGGCG
GCGGCGGCGGCGGCGGCGGTGGCCGTGATGGGCTATTGCAGCCGTCTCCG
GCCCCCGCTGCCGCTGCCTCCCCCGCCACTGATGCCTCCCACCAAGACCC
GGCGCTCGCGCCTGTCCCTGCGGCGGCGGCGGCGGCAGCGGCGGTTGCGG
ACATGGTGGCGCTGTGCGGCGAGATCTACGCGGAGCAACGGTTCTCGCCC
GAGCTGCTTGCAGACGCTCGTCAGACAGCCAAACGCCTCCTGGGCGGTGG
CGACGCGGGGGCCATGGACGCCGTGGTGCGCGCATGGGCCGTGCAGCGCG
CCGACGCCGCCGTGCGCTGGCCCGGC
back to top