mRNA_S-ischiensis_contig10.1366.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: D8LI84_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI84_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.080e-61 Identity = 106/203 (52.22%), Postives = 139/203 (68.47%), Query Frame = 2
Query: 32 VPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPSFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVGLHPLDIDAAKSLEDRSSKLALSSPSVLRPPQRIRKSTTIHSVDDARYLERVVEDGYHFTDKSSAPAGLEEVV 640
VP L I AFYRD+YHR+ L FD I+LSL+Y+ERL+ ET+G + P+P NW+SL+++AL+LSSKVWDD+SMWN DFS VFPSF+L R+N+LEVA+L L++NVKV +S+YAKYYFHLR+MC R GL +HPLD++ K LE S +HS +DA+ L +V + GY FTDK LE+VV
Sbjct: 419 VPPLRDITAFYRDLYHRTCLKFDSIVLSLIYMERLMKETKGAIRPQPWNWKSLIISALVLSSKVWDDNSMWNRDFSEVFPSFSLGRLNQLEVAVLGVLRFNVKVLSSEYAKYYFHLRAMCVRGGLSDSHAPIHPLDMEGIKELEAMS----------------------LHSANDAKLLRKVAKSGYAFTDKHGPSLSLEQVV 599
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S3DPP7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPP7_9STRA) HSP 1 Score: 177 bits (449), Expect = 8.990e-51 Identity = 88/154 (57.14%), Postives = 118/154 (76.62%), Query Frame = 2
Query: 29 EVPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPS---FTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVG-LHPLDIDAAKSLEDRSSK 478
+ PSL I FYRDV+ R+++ D +I+SL+YVERLI T+G L PR +NWRS+L + ++L+SKVWDD SMWNGDFS P+ FTL RINELE+A+L+AL+Y VKV AS+YAKYYF LRSM +SGLGG+ + ++PLD+D A+ L+ S+K
Sbjct: 60 KTPSLDDITTFYRDVFGRAQMESDCVIMSLIYVERLIKNTRGNLRPRATNWRSVLFSCMVLASKVWDDLSMWNGDFSQTCPAGVTFTLQRINELELAVLDALEYIVKVPASEYAKYYFLLRSMLIKSGLGGEDLNEMNPLDVDGARRLQAVSTK 213
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S1BXU3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXU3_9STRA) HSP 1 Score: 187 bits (474), Expect = 2.030e-50 Identity = 101/210 (48.10%), Postives = 140/210 (66.67%), Query Frame = 2
Query: 23 EPEVPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPSFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTV-GLHPLDIDAAKSLEDRSSKLALSSPSVLRPPQRIRKSTTIHSVDDARYLERVVEDGYHFTDK--SSAPAGLEEVVH 643
E VPSL + FYRDV+ +S++ D II+SL+Y+ERL+ ETQG + PR SNW+S++ +++I++SKVWDD SMWN DFS + PSFTL RIN+LE+A+L AL+Y VKV AS+YAKYYF LRSM ARSGLG D + PLD+D+ K E SS+ ++ ++IR++ S D+ R E+ H + + LE+VVH
Sbjct: 507 EVNVPSLEVLTKFYRDVFQKSQMESDCIIISLIYIERLVKETQGVVRPRCSNWKSIIFSSMIMASKVWDDLSMWNADFSQLSPSFTLQRINDLEIAILNALKYCVKVPASEYAKYYFLLRSMLARSGLGSDDLTSASPLDVDSVKKFETMSSRYGKNAA------KKIRRAA---SFDEYGLSARTPENSPHPLKRRITKGNVSLEQVVH 707
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S4AWA7_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWA7_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.660e-49 Identity = 92/164 (56.10%), Postives = 125/164 (76.22%), Query Frame = 2
Query: 32 VPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFP----SFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVG-LHPLDIDAAKSLEDRSSKLALSSPSVLR 508
+PSL +A FYRD + ++++ D II+SL+YVERLI +T GRL PR SNWRSL+ + +ILSSKVWDD SMWNGDFS P +F+L RIN+LE+A+L +L+++VKV AS+YAKYYF LRSM +SGLGG+ +G L PLD++ A+ L+ SS+ SS S+L+
Sbjct: 194 IPSLDEVATFYRDTFFKAQMEADCIIMSLIYVERLIKQTIGRLRPRASNWRSLIFSCMILSSKVWDDLSMWNGDFSQSCPPGGVNFSLQRINQLELAVLNSLKFSVKVPASEYAKYYFLLRSMLIKSGLGGEDLGSLDPLDVEGARRLQQVSSRFE-SSNSLLK 356
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7R9ZM94_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM94_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.150e-48 Identity = 90/179 (50.28%), Postives = 121/179 (67.60%), Query Frame = 2
Query: 32 VPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFP---SFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVG-LHPLDIDAAKSLEDRSSKLALSSPSVLRPPQRIRKSTTIHSVDD 556
+PSL + FYRD++ ++++ D II+SL+YVERLI T+G L PR SNWRS+L + ++LSSKVWDD SMWN DFS P SF L RINELE+A+L L++ VKV AS+YAKYYF LRSM +SGLGGD + L+PLD+ A L+ SS+ S + +R + + + V D
Sbjct: 35 IPSLEEVGKFYRDIFVKAQMESDCIIMSLIYVERLIKTTRGTLRPRASNWRSMLFSCMVLSSKVWDDLSMWNADFSQSCPPGVSFPLQRINELELAILNVLEFQVKVPASEYAKYYFLLRSMLIKSGLGGDQITTLNPLDVVGALRLQQVSSQYEADSLAKVRVTRSLNNRSKSLGVAD 213
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S2S551_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S551_9STRA) HSP 1 Score: 171 bits (433), Expect = 9.610e-48 Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 2
Query: 26 PEVPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPS---FTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVG-LHPLDIDAAKSLE 463
P +P+L I AFYRDV+ RS++ D II+SL+Y+ERLI +T G + P NWRS+L + ++LSSKVWDD SMWN DFS + PS F+L R N+LEVA+L L+Y VKV AS+YAKYYF LRSM RSGL DT+ L PLD+ AK+LE
Sbjct: 105 PIIPTLDDITAFYRDVFLRSQMEVDCIIISLIYIERLIKKTDGEVRPNVRNWRSVLFSCMVLSSKVWDDLSMWNCDFSKIGPSGVTFSLQRTNQLEVALLSHLEYKVKVNASEYAKYYFLLRSMLCRSGLASDTLSSLSPLDVKGAKTLE 254
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S2I4W4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4W4_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.400e-47 Identity = 89/154 (57.79%), Postives = 113/154 (73.38%), Query Frame = 2
Query: 23 EPEVPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFP---SFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVGLHPLDIDAAKSLEDRSS 475
E VPSL I FYRDV+ RS++ D II+SL+YVERLI +T G + P+PSNWRS+L + +++SSKVWDD SMWN DFS P SF+L RINELE+A+L L+YNVKV AS+YAKYYF LRSM RSGL G+ + PL+++ K LE S+
Sbjct: 338 EASVPSLDDITNFYRDVFRRSQMEADCIIMSLIYVERLIKDTNGGVRPKPSNWRSILFSCMVMSSKVWDDLSMWNADFSQTCPRDVSFSLQRINELELAVLGCLKYNVKVTASEYAKYYFLLRSMLIRSGLAGEDMTNTPLNMEGVKKLEHMSA 491
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A1E7FAH8_9STRA (Cyclin N-terminal domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAH8_9STRA) HSP 1 Score: 166 bits (421), Expect = 6.120e-47 Identity = 84/148 (56.76%), Postives = 110/148 (74.32%), Query Frame = 2
Query: 32 VPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPS---FTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVG-LHPLDIDAAKSLE 463
+PSL +A F+RDV+ ++++ D IILSL+YVERLI T G L P+ NWRSLL + +ILSSKVWDD SMWNGDFS PS F+L R N+LE+A+L L + VKV AS+YAKYYF LRSM +SGL G+ +G L+PLD++ A+ L+
Sbjct: 78 IPSLDEVATFFRDVFFKAQMEADCIILSLIYVERLIKVTHGCLRPKTCNWRSLLFSTMILSSKVWDDLSMWNGDFSQSCPSGVNFSLQRTNQLELAVLNTLHFKVKVPASEYAKYYFLLRSMLIKSGLAGENLGSLNPLDVEGARRLQ 225
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: A0A7S2SV86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV86_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.440e-46 Identity = 81/148 (54.73%), Postives = 110/148 (74.32%), Query Frame = 2
Query: 32 VPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPSFTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVGLHPLDIDAAKSLEDRSS 475
VPSL + F+R++Y +S++ + II+SL+Y+ER+ T+G + RP+NW+SLL++ +I++SKVWDD SMWN DFS V PSFTL RINELE+A+L+ L Y VKV AS YAKYYFH+RS C R GL D L PLD+ AK L++ S+
Sbjct: 252 VPSLQELVTFFREIYVKSQMEIECIIMSLIYLERVTKVTKGSIQVRPNNWKSLLVSTMIMASKVWDDLSMWNADFSQVCPSFTLRRINELELALLDVLGYIVKVAASDYAKYYFHIRSYCVRLGLTHDLDSLAPLDLTGAKKLQNLSA 399
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Match: B7G6C6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6C6_PHATC) HSP 1 Score: 175 bits (443), Expect = 1.350e-45 Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = 2
Query: 23 EPEVPSLHTIAAFYRDVYHRSKLSFDVIILSLVYVERLITETQGRLLPRPSNWRSLLMAALILSSKVWDDHSMWNGDFSVVFPS---FTLARINELEVAMLEALQYNVKVEASQYAKYYFHLRSMCARSGLGGDTVGLHPLDIDAAKSLEDRSSK 478
+P PSL I+ FYRDV+ R+++ D II+SL+YVERL+ T G+L P SNWRS+L + ++LSSKVWDD SMWN DFS P+ FTL RIN LEVA+L AL Y VKV AS+YAKYYF LRSM +SGLGG + +PLDI+ A+ L+ S +
Sbjct: 730 KPPPPSLEDISTFYRDVFTRAQMETDCIIMSLIYVERLVKVTDGKLRPHQSNWRSILFSCMVLSSKVWDDMSMWNADFSQTCPAGIEFTLQRINALEVAVLSALSYEVKVPASEYAKYYFLLRSMIIKSGLGGQDLMKNPLDIEGARRLQAVSER 884 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1366.1 >prot_S-ischiensis_contig10.1366.1 ID=prot_S-ischiensis_contig10.1366.1|Name=mRNA_S-ischiensis_contig10.1366.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp MAALILSSKVWDDHSMWNGDFSVVFPSFTLARINELEVAMLEALQYNVKVback to top mRNA from alignment at S-ischiensis_contig10:1200746..1206076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1366.1 ID=mRNA_S-ischiensis_contig10.1366.1|Name=mRNA_S-ischiensis_contig10.1366.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5331bp|location=Sequence derived from alignment at S-ischiensis_contig10:1200746..1206076+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:1200746..1206076+ >mRNA_S-ischiensis_contig10.1366.1 ID=mRNA_S-ischiensis_contig10.1366.1|Name=mRNA_S-ischiensis_contig10.1366.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig10:1200746..1206076+ (Schizocladia ischiensis KU_0333)back to top |