mRNA_S-ischiensis_contig10.1365.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1365.1
Unique NamemRNA_S-ischiensis_contig10.1365.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: D8LI84_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI84_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-10
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:   17 PVGIARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVEGGARE 169
            P  I RRNSTSTI+L  +DT++ PD D TIRCVCAV RAH++ A+  G  +
Sbjct:  285 PPSIVRRNSTSTIYLAAHDTLSDPDLDATIRCVCAVLRAHMIAALADGRED 335
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7S2SV86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV86_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.130e-8
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:   32 RRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVE 154
            RRNSTST+++    TM+ PD+D TI+CVC V RAH+LEAVE
Sbjct:  189 RRNSTSTLYV--GSTMSRPDKDATIKCVCTVIRAHMLEAVE 227
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7S2EB28_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB28_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.430e-6
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:   14 PPVGIARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVEGGARESTQ 178
            P   + +RN+  TI++    TM+ PD+D TI+CVC VYRAH+L++V    RE T+
Sbjct:  381 PKPSLTKRNTCGTIYI--GSTMSAPDKDATIKCVCGVYRAHMLQSV----REETE 429
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7S2YD02_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YD02_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.630e-6
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 2 
Query:   11 EPPVGIARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVEGGAREST 175
            +P    ARRN+  TIF+    TM +PD + TI+CVC VYRAHI++  E     ST
Sbjct:  302 KPASAHARRNTGGTIFVKA--TMVNPDVEATIKCVCGVYRAHIVQGQEQKRHRST 354
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7R9VHP5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHP5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.040e-6
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:   26 IARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVEGGA 163
            +A RN+  TI++  + TM+ PD+D TI+CVC VYRAH+L+A +  A
Sbjct:  772 LAARNTCGTIYV--SSTMSAPDKDATIKCVCGVYRAHMLQAAKDEA 815
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7S2I4W4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4W4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.770e-6
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:   14 PPVGIARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAV 151
            P   +A+RN+  TI++    TM+ PD+D +I+CVC V+RAH+L++V
Sbjct:  213 PKPNLAKRNTCGTIYI--GSTMSAPDKDASIKCVCGVFRAHLLQSV 256
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A1E7FAH8_9STRA (Cyclin N-terminal domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAH8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.260e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:   26 IARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEA 148
            + RRN+  T+F+    TM+ PD+D TIRCVC VYR+HIL +
Sbjct:    7 LKRRNTCGTMFI--RTTMSAPDKDATIRCVCGVYRSHILSS 45
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: B8LDN3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDN3_THAPS)

HSP 1 Score: 49.7 bits (117), Expect = 3.160e-5
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:   26 IARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEAVEGGARES 172
            +A+RN+  TI+L    T++ PD+D  I+CVC V+RAH+L++   GA  S
Sbjct:   72 LAKRNTCGTIYL--GSTLSAPDKDALIKCVCGVFRAHLLQSNIDGASSS 118
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A7S4AWA7_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWA7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.350e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:   23 GIARRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEA 148
            GI R N+  TI++    TM+ PD+D TIRCVC V+R+HIL +
Sbjct:  125 GIQRMNTCGTIYV--GTTMSAPDKDATIRCVCGVFRSHILSS 164
[Close]
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Match: A0A1Z5J8D8_FISSO (WW domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8D8_FISSO)

HSP 1 Score: 49.3 bits (116), Expect = 4.450e-5
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   32 RRNSTSTIFLDPNDTMTHPDQDVTIRCVCAVYRAHILEA 148
            RRN+  TIF+    TM +PD D TIRC+C +YR HI+E+
Sbjct:  353 RRNTGGTIFV--KSTMQNPDIDATIRCICGIYRVHIVES 389
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LI84_ECTSI1.200e-1056.86WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2SV86_9STRA6.130e-863.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2EB28_9STRA1.430e-645.45Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2YD02_9STRA3.630e-647.27Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9VHP5_9STRA5.040e-650.00Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S2I4W4_9STRA6.770e-645.65Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FAH8_9STRA1.260e-553.66Cyclin N-terminal domain-containing protein (Fragm... [more]
B8LDN3_THAPS3.160e-544.90Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4AWA7_9STRA4.350e-552.38Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5J8D8_FISSO4.450e-553.85WW domain-containing protein n=2 Tax=Fistulifera s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1198069..1199667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.2902458-CDS-S-ischiensis_contig10:1198068..11981791622815495.2902458-CDS-S-ischiensis_contig10:1198068..1198179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1198069..1198179 +
1695739734.4246426-CDS-S-ischiensis_contig10:1198068..11981791695739734.4246426-CDS-S-ischiensis_contig10:1198068..1198179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1198069..1198179 +
1622815495.3038108-CDS-S-ischiensis_contig10:1199565..11996671622815495.3038108-CDS-S-ischiensis_contig10:1199565..1199667Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1199566..1199667 +
1695739734.4331517-CDS-S-ischiensis_contig10:1199565..11996671695739734.4331517-CDS-S-ischiensis_contig10:1199565..1199667Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1199566..1199667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1365.1prot_S-ischiensis_contig10.1365.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1198069..1199667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1365.1

>prot_S-ischiensis_contig10.1365.1 ID=prot_S-ischiensis_contig10.1365.1|Name=mRNA_S-ischiensis_contig10.1365.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=71bp
GHAGAAGGDRAEEFHVYDIPGPQRHHDPPGPGRDDPVRVRRVPCAHPGSG
GGGCQRVHPRRWRRGHQQPRL
back to top

mRNA from alignment at S-ischiensis_contig10:1198069..1199667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1365.1 ID=mRNA_S-ischiensis_contig10.1365.1|Name=mRNA_S-ischiensis_contig10.1365.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1599bp|location=Sequence derived from alignment at S-ischiensis_contig10:1198069..1199667+ (Schizocladia ischiensis KU_0333)
GGGCATGCTGGAGCCGCCGGTGGGGATCGCGCGGAGGAATTCCACGTCTA
CGATATTCCTGGACCCCAACGACACCATGACCCACCCGGACCAGGACGTG
ACGATCCGGTGGTGAGGCTGGGGGGGAGGGGGTGATGAACGGTAATTTGC
TGTAGTCGCCACATGTACTACTTACTTGAGTACAGTGAGAGGTCCGACTT
ACTTCCTGATGAGTAGAGTCTATCGATCGTTCAAAGGTTCTCGTGCGGGA
AGTGTCTGTGGGATGATCGATGCCGGGGGAAGTTTCTGTATTTAGCGTAC
GAGCTCCAACGTACGATACCTCTTTAACGAGTAGGTACTTGCACCTTGTG
CAGCGGGCATGTGCGGGGCGTGTTGTTGAGCCGTGGGGCTGGCTGTGGCT
AGCGGCGGGGAGGTACGGCATGGGTTGCTTGTGTCGCATGTGTGTGTGTG
TGTGTGTTTGTGCGCTGTGTTTATAATAGGTGTGCGTGTGTGCATGCGCG
CGTGTGCGTGCGTGTGTGTCCGTGTGTGCATGCACGTGGGAGCGATCCCA
CACACTGCTTGGTGTAGTCCTGATGCCAATCCAAGTACGGGCCCTTGTGT
GCAAGAGCTGGTGTGCACGCAGGTAGGGTGTGTAGTTACTCGTGCAGTGC
TTGGTGCTGTTGAGGTTTGTACTTAGGCGGCGCACGTGCAATGCCGGCTT
CCAAGTAGCTCCTGCAGTGTACAGTACAATGCAGTAGAGTACAGTGGATA
GTGTAGTTCACCGGGGAACACCAGTGCTTCAATGTCGATATTCAAACGCA
TGCTTTGAAGTGCATCAGAACGAAATATCGAGTCGATGTTGAAACACTGG
CCAGCACAGCCCCCATCTGTCCCACAACCCCCCAAACTTTGCCCAGTTTC
GGTGGTTTTTCCCCCTCCTTTTGAAAACCGCTCGTGGGCTACCTAGAGTT
GGCAGCCATTTCTCTGGCTCGCCCTCCCGGTCTGTCTCCCTCCCTCACCC
CCCCACACACGCTAATGCGCACCACGTAATCCTCATCCATGACCCTTCCC
CTATCTGCCGTTCCTCCCACCCTTGCCCCATTAACCCTTTTACCCCTGGG
GTCCGTATAATCATAGGGTTTTGGTGTGTAAATCCAAGTTAACAGGGATA
TATACGTAGTATGTACTCATGTGGTGCTTGCCGTAGTCCCGCGACCATTG
ACCCCGCGCCTCGTTCGAGGCGGAGCAGGACCCCTCCCTCCCCTGGTATA
TATATATATATACTAGTATGTACTCATTGGTTTGTCTTGCGACATAACCT
TGCGTGCAGTGCCGACAGCCCTAAGTCGAAATTTCGGGTTTGCCCTCCGA
CAGGAGTAGCTATTTAGCCATGGACTCTCGCGTCCCAAGTAGGCCGGGAC
GGAGCATGCCGGGTTTGCACCAGCCAGGCCGTTATCTCCTCCCCTGGCAG
ATAAAAGGGTTAATTCGTGCACCCCATACCCATGCTGTCCCCCGCAGCGT
GTGCGCCGTGTACCGTGCGCACATCCTGGAAGCGGTGGAGGGGGGTGCCA
GAGAGTCCACCCAAGGAGGTGGCGGAGGGGGCACCAGCAGCCGCGGCTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:1198069..1199667+

>mRNA_S-ischiensis_contig10.1365.1 ID=mRNA_S-ischiensis_contig10.1365.1|Name=mRNA_S-ischiensis_contig10.1365.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig10:1198069..1199667+ (Schizocladia ischiensis KU_0333)
GGGCATGCTGGAGCCGCCGGTGGGGATCGCGCGGAGGAATTCCACGTCTA
CGATATTCCTGGACCCCAACGACACCATGACCCACCCGGACCAGGACGTG
ACGATCCGGTGGGGCATGCTGGAGCCGCCGGTGGGGATCGCGCGGAGGAA
TTCCACGTCTACGATATTCCTGGACCCCAACGACACCATGACCCACCCGG
ACCAGGACGTGACGATCCGGTGCGTGTGCGCCGTGTACCGTGCGCACATC
CTGGAAGCGGTGGAGGGGGGTGCCAGAGAGTCCACCCAAGGAGGTGGCGG
AGGGGGCACCAGCAGCCGCGGCTTCGTGTGCGCCGTGTACCGTGCGCACA
TCCTGGAAGCGGTGGAGGGGGGTGCCAGAGAGTCCACCCAAGGAGGTGGC
GGAGGGGGCACCAGCAGCCGCGGCTT
back to top