mRNA_S-ischiensis_contig10.1354.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1354.1
Unique NamemRNA_S-ischiensis_contig10.1354.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1133415..1134501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.0541854-CDS-S-ischiensis_contig10:1133414..11335561622815495.0541854-CDS-S-ischiensis_contig10:1133414..1133556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1133415..1133556 +
1695739734.349225-CDS-S-ischiensis_contig10:1133414..11335561695739734.349225-CDS-S-ischiensis_contig10:1133414..1133556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1133415..1133556 +
1622815495.0684326-CDS-S-ischiensis_contig10:1134420..11345001622815495.0684326-CDS-S-ischiensis_contig10:1134420..1134500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1134421..1134500 +
1695739734.3591352-CDS-S-ischiensis_contig10:1134420..11345001695739734.3591352-CDS-S-ischiensis_contig10:1134420..1134500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1134421..1134500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1354.1prot_S-ischiensis_contig10.1354.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1133415..1134500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1354.1

>prot_S-ischiensis_contig10.1354.1 ID=prot_S-ischiensis_contig10.1354.1|Name=mRNA_S-ischiensis_contig10.1354.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
QARAPPWGTWSCCGPFRPRRRSSGDLTSGPPWPRPAWRRAGCSWHASAED
PGQARRRRRQRQLGPDQARPAQTG
back to top

mRNA from alignment at S-ischiensis_contig10:1133415..1134501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1354.1 ID=mRNA_S-ischiensis_contig10.1354.1|Name=mRNA_S-ischiensis_contig10.1354.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1087bp|location=Sequence derived from alignment at S-ischiensis_contig10:1133415..1134501+ (Schizocladia ischiensis KU_0333)
CAGGCTCGGGCGCCTCCCTGGGGGACGTGGAGCTGCTGCGGCCCTTTCCG
CCCCCGGCGACGGTCTTCCGGGGATTTGACCTCAGGGCCACCGTGGCCGA
GGCCGGCCTGGCGCCGCGCGGGGTGCTCGTGGCACGCTTCAGGTGCTGCA
GGTGTAAACGTAGTGCTTGCAGTTACTTGCAGTACTTCCGGAAGTACACT
ACAGTACAGTACTGGGGCAGAATGGCTCTCCCAAGAAACTGTCATAGGGC
GCGAGATGCCTCCATGATTGTGGTACGTACGTGCAGCGGCAGGAGTGGGT
GCCGTTGGGAGCTGTGGCGCAGCGATGGCCCCACGGCTGTGTCGGTGGAG
CAAGAAGGTGGGATGGTGGTGGTGGTGGCGGCGGCGGCGGCGGGGGGAAC
AGCCCAAGCTGCCCCCCGCTGCCCGTCCGTTGATGCCGTCCCGCCTTTGA
AGTGCCTCGCCTCTCCTCCCGTTTCCCGCCACCCTCCACCGTCACCCCCA
AGTTTGCCCTCATGTACTTCGAAGCGCAAAGTACTAAAGTACTCTGCTTG
CTCGCCAGTGCTGTCTGGGCACTGGCATGCTATGCGGCTGGGGTGGGTTG
TGTGTGTGTTGGGGAGGTGGGGGGAGGCGGGGAGGTGGGGGAATGCAAGC
CTGCCCTGCTGCAACGAGATGCCCCGCTCCTGAGTCGTCGAATGAGTCAC
CGCAATCGTCATGATGTGATGTGGCATGGTGTGGTGGGATGTGATGTGAT
GTGATGCGACGTGTCGTGACGTGGTGTGGTGTATGTGCAGTAGCGCGACG
TGGTGCGCTATGGTGTCATGTGATGTGATCTGAACTCTATACGTTTCCAG
TAGTCTGACCAGTGCCTCCACCTGACTGACGTCCTTTGACGCTGCCGCCC
CCCTTGGCGGCATTCGCCCCCTCCCTCTCGCCCCCCCTTGCCCATCTGCT
TGCGCTGTTACGCCCACACCCTCGGGCCGTGCGCGGCAACTGGCTCTGTC
TTGTAGCGGAGGACCCAGGGCAGGCGAGGCGCCGCCGGCGTCAGCGACAG
TTGGGCCCGGATCAGGCGCGTCCAGCGCAGACGGGAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:1133415..1134501+

>mRNA_S-ischiensis_contig10.1354.1 ID=mRNA_S-ischiensis_contig10.1354.1|Name=mRNA_S-ischiensis_contig10.1354.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig10:1133415..1134501+ (Schizocladia ischiensis KU_0333)
CAGGCTCGGGCGCCTCCCTGGGGGACGTGGAGCTGCTGCGGCCCTTTCCG
CCCCCGGCGACGGTCTTCCGGGGATTTGACCTCAGGGCCACCGTGGCCGA
GGCCGGCCTGGCGCCGCGCGGGGTGCTCGTGGCACGCTTCAGCAGGCTCG
GGCGCCTCCCTGGGGGACGTGGAGCTGCTGCGGCCCTTTCCGCCCCCGGC
GACGGTCTTCCGGGGATTTGACCTCAGGGCCACCGTGGCCGAGGCCGGCC
TGGCGCCGCGCGGGGTGCTCGTGGCACGCTTCAGCGGAGGACCCAGGGCA
GGCGAGGCGCCGCCGGCGTCAGCGACAGTTGGGCCCGGATCAGGCGCGTC
CAGCGCAGACGGGACGGAGGACCCAGGGCAGGCGAGGCGCCGCCGGCGTC
AGCGACAGTTGGGCCCGGATCAGGCGCGTCCAGCGCAGACGGGA
back to top