mRNA_S-ischiensis_contig10.1346.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1346.1
Unique NamemRNA_S-ischiensis_contig10.1346.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1050275..1053549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1346.1prot_S-ischiensis_contig10.1346.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1050285..1053549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.8617492-UTR-S-ischiensis_contig10:1050274..10502841622815494.8617492-UTR-S-ischiensis_contig10:1050274..1050284Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1050275..1050284 +
1695739734.2750688-UTR-S-ischiensis_contig10:1050274..10502841695739734.2750688-UTR-S-ischiensis_contig10:1050274..1050284Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 1050275..1050284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.873767-CDS-S-ischiensis_contig10:1050284..10504211622815494.873767-CDS-S-ischiensis_contig10:1050284..1050421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1050285..1050421 +
1695739734.2848191-CDS-S-ischiensis_contig10:1050284..10504211695739734.2848191-CDS-S-ischiensis_contig10:1050284..1050421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1050285..1050421 +
1622815494.8846636-CDS-S-ischiensis_contig10:1053473..10535491622815494.8846636-CDS-S-ischiensis_contig10:1053473..1053549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1053474..1053549 +
1695739734.2928088-CDS-S-ischiensis_contig10:1053473..10535491695739734.2928088-CDS-S-ischiensis_contig10:1053473..1053549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1053474..1053549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1346.1

>prot_S-ischiensis_contig10.1346.1 ID=prot_S-ischiensis_contig10.1346.1|Name=mRNA_S-ischiensis_contig10.1346.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=71bp
MRYQDDTSSPFFWVLFDFSGSTPDTYYNAEGDAMHPGDLDPTAWLFSTAD
CATAACEQTAIVSILCPGETV
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mRNA from alignment at S-ischiensis_contig10:1050275..1053549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1346.1 ID=mRNA_S-ischiensis_contig10.1346.1|Name=mRNA_S-ischiensis_contig10.1346.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3275bp|location=Sequence derived from alignment at S-ischiensis_contig10:1050275..1053549+ (Schizocladia ischiensis KU_0333)
TAGGTATCTAATGCGGTATCAGGACGACACCAGCTCCCCCTTTTTCTGGG
TGCTGTTCGACTTCTCGGGAAGTACTCCGGACACATACTACAACGCGGAG
GGCGACGCCATGCACCCGGGAGATCTGGATCCCACGGCTTGGCTCTTGTG
AGTGAGACTCTGTGGTTAACCCTTGAAGGACCAGCGTAGTGCACAGTACA
GGGGATGTCGTGTGGGGCACACATGGCGGTGTGCTGGCTTATCTCTCACT
GGAACAAAAAACAGGGCTTGTGAATCTGGATCCCGTTGCTTGGGCCTTGG
GAGTGAGACTCGACGGTTCACCCTTGAAGGACTGCCGTACATGTATGCAG
TGCAGTGTATGTAGTGTGCTTTATGTACAGTACTCCAAGTACCTATGACG
GTGCTCTGGCCTGCCGTATATCTCGCTGAGAAAAAAGGGGGCGTGTGAGT
GAGACCCTTGCAAGAGGGGCTGTTGCACGTTTCTAAGTGATAGCTAAATC
CAACTATCCCTTGGGGGATGACTTATCGTGGCGGTATGCTGGCTTCTCTC
CTAGAGAGAACGGGGGGGGGATGCAGGTACTTTGAGCATTGAGATTGATT
ATTGGTCTGCGCAGGTAGTGGACGTGGGGAGAGACCGCCCACAGTTGTGC
AACTTTTTTTCTTCGCCTTGTGCGGCAGGGTTTTTGGTTCGGCTAAACTA
GCGGCGACGATCTTGCCGCGATTCTTCAAAAGTGTGTTTGATCGACGCTT
GCTGAATCCAAGATGTTGCTACAGTAGATGCTGTGAAGTAGAGCACTGTT
GTGCGAAGTACGCTACAGTAGTACAGTAGATGATGTACTGTAGTCCAACC
AGGTATACGACAGTGTGTTGGGACGTGATTTTTCTCATCCAAGCTACTCA
AGAGCGTTTGTTGATGTGCCTCTTCCCAATGTAGAGTATGACAGTATTAG
TTGCACTTCGAAGTAGTACTTTCTGCAGTAGTACTCGAGTAGTACTGCGT
AGAGAGCATGTATCTGTAGGACAACATACTAGTACTGTATTAGTACTCGA
GTACAATAGTAGTGGTGGTAGTGCAAGTACTCGTACTTGGTAGTACAGTG
CAGTACAGTATGGGAACCCGCCCAATAGACAAACATCTGGCTGGTAGCAT
GCGATGGATTTCATCCAAGCTACTATAGGTATTCGTCGATACACCTGTTC
CGAGCTTACAATATGACGGTAGAACACTTGCAGTATTATTGTACATCCAA
GCACTTCGAGCTACGCAAGGACATAGTCCCTCCCCAGAGAGGAGGAAATT
CCATGGGATATGCTCTCCACACCTCAAGTCATCTATCGACCGGTGCTCTT
TTCCAAGCATGTACATAGTTACAGTTCCTACATATGTACTCGTAGTGTTC
AATGGTTCGAGGAGAAAAAAGCGAACGTGAAGTGCTGGAGACCATACCTA
CTTCCTGGAAGTATACCGCAACTACTTACTGCAGAGTGCGATTCACACTG
TACTGTACACAGTTGCCCTTTGCTACGGCATATATGGCTCCTACACTCCC
CGATTTGGTTAGTTTCGGTGGGTGCCGGCCATGCTGTGTCCGAGAACCAT
AAGTACAGGATCGAAGTGGTAAACGTCGAGAGGAAGACGGTTGCGTAAGT
AACTTGCCCTAACATAGCCTAGCGTATTTGTCAGAGATCTCGCCTCCCCG
TGCTTTTCTTGCCGAGTACTGGTCGGGTTCGCGGATCGGGGAAGCCCAAG
GGAATTTACTGGGGGACCTCGTCGCGATTTGGGGTCTATTCTAACATTGT
CCTGAGGGGGAAAGATTGTTAACTTGCTGATACTGTGCGTACGAGTGCAA
TCATATGACACGTACTGTAAGGTAGGATTTTTTTGTGAGGAGTTCAGCTA
GTGTGCCGCCGTCCCCTAGTCCAAGGGTTGCACCGGCGGGGGGGGGAACA
AGTGCGCCTGGAGAGCGGATAAAATCGGCCGCTTAGTACTCTGTTCCCGA
CAAGAGGCGCATGGTCACTGGTCTCCGCACCGTTGCACTTGTCAGTAGGG
CAACCTCGTCACAACGGTGGATAAGGTGTACAGTTACAGTGCACAGTATG
CACAAGCACCATGTACAGTTGCAGTATATTGTACACGCTTGGGAGGTTTG
CTGTGCTATCTCACAAGTATGTACTCGGACAGTACTTGGAAGTAGAGTAG
AGTACGTGTACATGGCGTGTGTAGTGCGAGCGCGAGCGAGAGGGTCAGGG
CCCCGGGCCCCGGCTCCCCCGCCAGCTGTGTGCTCCCTGCGGCCAGAGTA
CGATAGAGCGCTCGAACTGTTGCAGACTTGGCCGATGGAGCCACTGTTTG
AGATTGCCGGACAAAAACTGCCGCCTGTATTCGGCACAGCAGGCAATTTG
AGGTTCGGCTGGCATACTGCGGAAACAAGCCCTACCGCTGCTGGTGCTGC
TGCTGCTGCTGTAGCTGCTGCTACTGCTAACCACTAGAGGAATGCACTAC
TGTACGTACCACTCAGCACAACTTCCGGAAGTACATAATATTGCGGTACT
GTAGTCAGCCGAGTGAGGCATACTCCATAAAGTACCTACTTTTCCAGGCA
CTGGCAAGTACTACATGTGCTGGTACTACTGTACGGTACTGTACTCGAGT
ACAGCGCTCGACGACAGTACTAGTGCTACCACAACACCACAAACTAGGCA
CGGTACAGCACTACGCCTCCACTCCTGTAGTGCTGCTACAAGAAACTGAG
TGATGTACGCGAGTACTAGTACATTTGGTACTGCTGCTACTGTACAGCAG
TACTCGTACTTGTTTCTTCTGCTTCAATGGGTTTACCAGGCGTACAGTAG
TGCACCTCTTGCACCTCTCGACAGGCCGCTTAGGGTACCTTCTACTTCTC
CAAGTCCAGTACTTCCTTTGAATCACCAGGTTGCCTACTCGTACCCTGTA
GCCATATCTCGACCCCTCTCCCTCCCCCCTCCCCCATTGTTTTCCTCTTC
CACGGCTCCCGCTCACAACCCCGCTCACACTCCGCCTGCCCCTGCATTTT
GCTACGCACGGCTTTTGTTCCTTCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCCCCTCCCCTTCCCACTCTCTCTCCCATTCCGCCGCGCT
CCTCCCCGTCCCCCTCCCCCTCCCCGTCCCGCCCCCCCCCGGCCCCCAGT
TCCACCGCCGACTGCGCAACCGCCGCGTGTGAGCAAACGGCCATAGTGTC
CATCCTCTGCCCTGGGGAGACGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1050275..1053549+

>mRNA_S-ischiensis_contig10.1346.1 ID=mRNA_S-ischiensis_contig10.1346.1|Name=mRNA_S-ischiensis_contig10.1346.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig10:1050275..1053549+ (Schizocladia ischiensis KU_0333)
ATGCGGTATCAGGACGACACCAGCTCCCCCTTTTTCTGGGTGCTGTTCGA
CTTCTCGGGAAGTACTCCGGACACATACTACAACGCGGAGGGCGACGCCA
TGCACCCGGGAGATCTGGATCCCACGGCTTGGCTCTTATGCGGTATCAGG
ACGACACCAGCTCCCCCTTTTTCTGGGTGCTGTTCGACTTCTCGGGAAGT
ACTCCGGACACATACTACAACGCGGAGGGCGACGCCATGCACCCGGGAGA
TCTGGATCCCACGGCTTGGCTCTTTTCCACCGCCGACTGCGCAACCGCCG
CGTGTGAGCAAACGGCCATAGTGTCCATCCTCTGCCCTGGGGAGACGGTG
TTCCACCGCCGACTGCGCAACCGCCGCGTGTGAGCAAACGGCCATAGTGT
CCATCCTCTGCCCTGGGGAGACGGTG
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