mRNA_S-ischiensis_contig10.1337.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1337.1
Unique NamemRNA_S-ischiensis_contig10.1337.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig10.1337.1 vs. uniprot
Match: A0A7Y4QF98_9BACT (DUF4215 domain-containing protein n=1 Tax=Candidatus Peribacteraceae bacterium TaxID=2735830 RepID=A0A7Y4QF98_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 3.680e-5
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:   42 LCGNGRRDRGEQCDDGNRRSGDGCSRFCERE 134
            LCGNG+RD  EQCDDGNR +GDGCSRFC RE
Sbjct: 1916 LCGNGKRDPPEQCDDGNRITGDGCSRFCLRE 1946
[Close]
BLAST of mRNA_S-ischiensis_contig10.1337.1 vs. uniprot
Match: A0A7X9P9B8_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9P9B8_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 8.590e-5
Identity = 33/80 (41.25%), Postives = 38/80 (47.50%), Query Frame = 3 
Query:   45 CGNGRRDRGEQCDDGNRRSGDGCSRFCERECPGRAARFCRA*SMPTLPTPGQRRARGG*TEFP-----VQSWGLHQLRFH 269
            CGNG  D GE+CDDGNR +GDGCS  C RE       FC    + TL   G     GG    P        WG++  R H
Sbjct:   89 CGNGVVDEGEECDDGNRDTGDGCSPACRRE-------FCGDGVVGTLLPVGDGFESGGLAALPWVPDETYGWGVYDTRRH 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y4QF98_9BACT3.680e-580.65DUF4215 domain-containing protein n=1 Tax=Candidat... [more]
A0A7X9P9B8_9DELT8.590e-541.25Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:959931..961210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size589
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1337.1prot_S-ischiensis_contig10.1337.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 960123..961210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.7882366-UTR-S-ischiensis_contig10:959930..9601221622815494.7882366-UTR-S-ischiensis_contig10:959930..960122Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 959931..960122 -
1695739734.243532-UTR-S-ischiensis_contig10:959930..9601221695739734.243532-UTR-S-ischiensis_contig10:959930..960122Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 959931..960122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.8034782-CDS-S-ischiensis_contig10:960122..9604591622815494.8034782-CDS-S-ischiensis_contig10:960122..960459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 960123..960459 -
1695739734.2535162-CDS-S-ischiensis_contig10:960122..9604591695739734.2535162-CDS-S-ischiensis_contig10:960122..960459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 960123..960459 -
1622815494.8193245-CDS-S-ischiensis_contig10:961151..9612101622815494.8193245-CDS-S-ischiensis_contig10:961151..961210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 961152..961210 -
1695739734.2653818-CDS-S-ischiensis_contig10:961151..9612101695739734.2653818-CDS-S-ischiensis_contig10:961151..961210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 961152..961210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1337.1

>prot_S-ischiensis_contig10.1337.1 ID=prot_S-ischiensis_contig10.1337.1|Name=mRNA_S-ischiensis_contig10.1337.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
SRGRAPSRAPGPATCAATEGATVASSATTATGAAATGAAASARGSAPAGP
RASAGPDRCRRCQLQGNAERGVARLSFRFSLGGFISCGFIARLACLGPSG
RVACRPCFSLGSASPSDTSHACAVNESHPRC*
back to top

mRNA from alignment at S-ischiensis_contig10:959931..961210-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1337.1 ID=mRNA_S-ischiensis_contig10.1337.1|Name=mRNA_S-ischiensis_contig10.1337.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1280bp|location=Sequence derived from alignment at S-ischiensis_contig10:959931..961210- (Schizocladia ischiensis KU_0333)
AGCCGCGGCCGCGCCCCCAGCCGCGCCCCAGGCCCCGCAACCTGTGCGGC
AACGGAAGGGTGAGCTTTTTGTCGCTGGCCGCACGCAGGGGAGAATGCCC
CATGATGCCGTTCTGGTGTGACTCTTGGCCTCCGTGCTGGCCGCCGCTCA
GTGCCGATTTACTCGCCGACTGCAGTCCTTCGATTTCTGTTTTCCGACCT
TGAAGTTGGTTGGAGTTGGGGGGGAGGCTTTCACCGTGGCGGGTCCACAG
CATGTTGCACATCGCAGTATACGCACTCTACGACAGTACATAGTGTACTC
TAGCAGTGCTATACATACTTTGTGAAGTAGTAGTGCTTGATCATCGCTGT
AAGTACTTGATGACACGCGTGGCAACGCCTGGTACGGCATGTTCTGAAGT
ACCCAAAAATTGCACTGTATCGGTGCGTATGTACAGACCGAACCGAGCAC
TTGATGATGATTTGACTGCACCGAGGCTCAGCCATCTCGAACTTGGAAGC
TCAGCCATCTCGAACTTGGAAGGATTAACCCACCGCGGCCAGCACCGCGG
CGTGCACCGGAGCATAGCTTGCCTCTCTGTGACTGCTTGCACTGTGTGCG
TAAGACGGGATACTGCACTGCCTATCACGCTTGCCACTGTACACCTACCA
ACTCTGCCCGCCTCAGACTGACGCGTGCCCGCCCCCCCCCTGCTGGACCG
CCTGCCCTTTCCTTGGGCGATGCATCCGTCTCACCGCCCTTGTGCTACCA
GCGCGACCGTGGCGAGCAGTGCGACGACGGCAACCGGCGCAGCGGCGACG
GGTGCAGCCGCTTCTGCGAGAGGGAGTGCCCCGGCCGGGCCGCGCGCTTC
TGCCGGGCCTGATCGATGCCGACGCTGCCAACTCCAGGGCAACGCCGAGC
GAGGGGTGGCTAGACTGAGTTTCCGGTTCAGTCTTGGGGGCTTCATCAGT
TGCGGTTTCATCGCCCGGTTGGCGTGCCTTGGCCCGTCCGGTCGGGTTGC
ATGCCGGCCATGTTTTTCTTTGGGGTCGGCCAGTCCGTCAGACACGTCCC
ATGCTTGTGCAGTGAATGAATCTCACCCCAGATGTTGACGGTTTCCTTCT
GTGTTTTGGAAGTAGAGTACATAGTACTTCCTTGGAAGCGCCCCTGCGGC
GCCGAGGCAAGCGGAAGGAGAACCTCAGTGAAGGGCGGCGCTCCTCGCCG
TCCAACACTGCTGCGTTTTGCACTACAGTAGTACAGTAGTGCTCAAGTGT
TAAGTTAATTGAACCGTGTGTGTTGACAAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:959931..961210-

>mRNA_S-ischiensis_contig10.1337.1 ID=mRNA_S-ischiensis_contig10.1337.1|Name=mRNA_S-ischiensis_contig10.1337.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig10:959931..961210- (Schizocladia ischiensis KU_0333)
AGCCGCGGCCGCGCCCCCAGCCGCGCCCCAGGCCCCGCAACCTGTGCGGC
AACGGAAGGAGCCGCGGCCGCGCCCCCAGCCGCGCCCCAGGCCCCGCAAC
CTGTGCGGCAACGGAAGGCGCGACCGTGGCGAGCAGTGCGACGACGGCAA
CCGGCGCAGCGGCGACGGGTGCAGCCGCTTCTGCGAGAGGGAGTGCCCCG
GCCGGGCCGCGCGCTTCTGCCGGGCCTGATCGATGCCGACGCTGCCAACT
CCAGGGCAACGCCGAGCGAGGGGTGGCTAGACTGAGTTTCCGGTTCAGTC
TTGGGGGCTTCATCAGTTGCGGTTTCATCGCCCGGTTGGCGTGCCTTGGC
CCGTCCGGTCGGGTTGCATGCCGGCCATGTTTTTCTTTGGGGTCGGCCAG
TCCGTCAGACACGTCCCATGCTTGTGCAGTGAATGAATCTCACCCCAGAT
GTTGACGCGACCGTGGCGAGCAGTGCGACGACGGCAACCGGCGCAGCGGC
GACGGGTGCAGCCGCTTCTGCGAGAGGGAGTGCCCCGGCCGGGCCGCGCG
CTTCTGCCGGGCCTGATCGATGCCGACGCTGCCAACTCCAGGGCAACGCC
GAGCGAGGGGTGGCTAGACTGAGTTTCCGGTTCAGTCTTGGGGGCTTCAT
CAGTTGCGGTTTCATCGCCCGGTTGGCGTGCCTTGGCCCGTCCGGTCGGG
TTGCATGCCGGCCATGTTTTTCTTTGGGGTCGGCCAGTCCGTCAGACACG
TCCCATGCTTGTGCAGTGAATGAATCTCACCCCAGATGTTGA
back to top