mRNA_S-ischiensis_contig10.1329.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1329.1
Unique NamemRNA_S-ischiensis_contig10.1329.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:920426..921315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1329.1prot_S-ischiensis_contig10.1329.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 920426..921315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.6558902-CDS-S-ischiensis_contig10:920425..9205631622815494.6558902-CDS-S-ischiensis_contig10:920425..920563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 920426..920563 -
1695739734.1154993-CDS-S-ischiensis_contig10:920425..9205631695739734.1154993-CDS-S-ischiensis_contig10:920425..920563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 920426..920563 -
1622815494.6736658-CDS-S-ischiensis_contig10:920936..9211091622815494.6736658-CDS-S-ischiensis_contig10:920936..921109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 920937..921109 -
1695739734.125392-CDS-S-ischiensis_contig10:920936..9211091695739734.125392-CDS-S-ischiensis_contig10:920936..921109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 920937..921109 -
1622815494.68618-CDS-S-ischiensis_contig10:921209..9213151622815494.68618-CDS-S-ischiensis_contig10:921209..921315Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 921210..921315 -
1695739734.1331604-CDS-S-ischiensis_contig10:921209..9213151695739734.1331604-CDS-S-ischiensis_contig10:921209..921315Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 921210..921315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1329.1

>prot_S-ischiensis_contig10.1329.1 ID=prot_S-ischiensis_contig10.1329.1|Name=mRNA_S-ischiensis_contig10.1329.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
STAWAFTYEREAVENSPGARHPPHPARKWGHQYCTRYKFQAAYARSTPFW
DSMMMTLRPGGTGSTATQPGCLPRSGTGWRKRGRVCWSRSAVMQSRRKRR
SDLQTASYSVFRSGHSGSTGRSWRIEGGTAPTTGHTVLW
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mRNA from alignment at S-ischiensis_contig10:920426..921315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1329.1 ID=mRNA_S-ischiensis_contig10.1329.1|Name=mRNA_S-ischiensis_contig10.1329.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=890bp|location=Sequence derived from alignment at S-ischiensis_contig10:920426..921315- (Schizocladia ischiensis KU_0333)
AGCACGGCATGGGCCTTCACGTACGAACGGGAAGCTGTCGAGAATTCTCC
AGGGGCTAGGCACCCCCCGCACCCTGCGCGTAAATGGGGCCACCAATACT
GCACCCGTGAGTTGGGCCAACGACGTCCGGTCTGCTCGCGAAGCCGCACA
ATCGGGAAGGGCTTTGCCAATAAACGCGTTCTTGCCCCCGCGACGGCCTC
CTACAGGGTACAAATTCCAAGCAGCTTACGCGCGGTCGACTCCATTTTGG
GACTCTATGATGATGACGCTCAGACCGGGGGGAACCGGATCTACGGCCAC
CCAGCCGGGCTGTCTGCCGAGGAGCGGTACCGGTTGGCGGAAGCGCGGGA
GGGTGTGCTGGAGCAGAAGCGCTGTGATGGTATGATGACTCTGCAGTTCT
TTGGTTCGTGGTGCATTTATTACGCCTTTCCTTGAGCGTACCATTCAGGC
TTGCTGAATACTCTTAATACTCCAAGTACTCTAGTACTTGGCATGTACTT
GGAGTACCGCTAAGAAGCAGGACAGGCTTTCGCTCCCGACACCAGTCCCT
GGGGGGCCCACGTTAGGAGCTCCGATGCCTCGGCAAAGTCACATAGCATG
TTTTGTTGAGAAACACAGACGAGGAGCAGCTGCACGGGTGTGTGACCACT
CGTCTCTCCTTGAGATTTGCTTCGAAGCAAACACACCATTTTTTTATTCC
AACCACCACGTCACACGCCGACGAGCACCGTCCTGCTCGCCGCCGTTCCC
AGCAATCTCGCAGAAAGAGAAGGAGCGATTTGCAAACGGCCAGCTACTCC
GTCTTCAGAAGCGGGCACTCCGGCTCCACAGGCAGGTCATGGCGCATCGA
GGGCGGGACAGCGCCGACGACGGGACACACAGTGTTGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:920426..921315-

>mRNA_S-ischiensis_contig10.1329.1 ID=mRNA_S-ischiensis_contig10.1329.1|Name=mRNA_S-ischiensis_contig10.1329.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig10:920426..921315- (Schizocladia ischiensis KU_0333)
AGCACGGCATGGGCCTTCACGTACGAACGGGAAGCTGTCGAGAATTCTCC
AGGGGCTAGGCACCCCCCGCACCCTGCGCGTAAATGGGGCCACCAATACT
GCACCCAGCACGGCATGGGCCTTCACGTACGAACGGGAAGCTGTCGAGAA
TTCTCCAGGGGCTAGGCACCCCCCGCACCCTGCGCGTAAATGGGGCCACC
AATACTGCACCCGGTACAAATTCCAAGCAGCTTACGCGCGGTCGACTCCA
TTTTGGGACTCTATGATGATGACGCTCAGACCGGGGGGAACCGGATCTAC
GGCCACCCAGCCGGGCTGTCTGCCGAGGAGCGGTACCGGTTGGCGGAAGC
GCGGGAGGGTGTGCTGGAGCAGAAGCGCTGTGATGGGTACAAATTCCAAG
CAGCTTACGCGCGGTCGACTCCATTTTGGGACTCTATGATGATGACGCTC
AGACCGGGGGGAACCGGATCTACGGCCACCCAGCCGGGCTGTCTGCCGAG
GAGCGGTACCGGTTGGCGGAAGCGCGGGAGGGTGTGCTGGAGCAGAAGCG
CTGTGATGCAATCTCGCAGAAAGAGAAGGAGCGATTTGCAAACGGCCAGC
TACTCCGTCTTCAGAAGCGGGCACTCCGGCTCCACAGGCAGGTCATGGCG
CATCGAGGGCGGGACAGCGCCGACGACGGGACACACAGTGTTGTGGCAAT
CTCGCAGAAAGAGAAGGAGCGATTTGCAAACGGCCAGCTACTCCGTCTTC
AGAAGCGGGCACTCCGGCTCCACAGGCAGGTCATGGCGCATCGAGGGCGG
GACAGCGCCGACGACGGGACACACAGTGTTGTGG
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