mRNA_S-ischiensis_contig10.1328.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1328.1
Unique NamemRNA_S-ischiensis_contig10.1328.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:915066..915610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size200
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1328.1prot_S-ischiensis_contig10.1328.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 915090..915548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.5710762-UTR-S-ischiensis_contig10:915065..9150891622815494.5710762-UTR-S-ischiensis_contig10:915065..915089Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 915066..915089 +
1695739734.0773082-UTR-S-ischiensis_contig10:915065..9150891695739734.0773082-UTR-S-ischiensis_contig10:915065..915089Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 915066..915089 +
1622815494.610947-UTR-S-ischiensis_contig10:915548..9156101622815494.610947-UTR-S-ischiensis_contig10:915548..915610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 915549..915610 +
1695739734.1062183-UTR-S-ischiensis_contig10:915548..9156101695739734.1062183-UTR-S-ischiensis_contig10:915548..915610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 915549..915610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.5841348-CDS-S-ischiensis_contig10:915089..9151001622815494.5841348-CDS-S-ischiensis_contig10:915089..915100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 915090..915100 +
1695739734.0858717-CDS-S-ischiensis_contig10:915089..9151001695739734.0858717-CDS-S-ischiensis_contig10:915089..915100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 915090..915100 +
1622815494.596879-CDS-S-ischiensis_contig10:915445..9155481622815494.596879-CDS-S-ischiensis_contig10:915445..915548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 915446..915548 +
1695739734.096599-CDS-S-ischiensis_contig10:915445..9155481695739734.096599-CDS-S-ischiensis_contig10:915445..915548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 915446..915548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1328.1

>prot_S-ischiensis_contig10.1328.1 ID=prot_S-ischiensis_contig10.1328.1|Name=mRNA_S-ischiensis_contig10.1328.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=38bp
MDGRRPSQAQDPFGLLFLPVNRHKMAAAAEAGRDHRR*
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mRNA from alignment at S-ischiensis_contig10:915066..915610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1328.1 ID=mRNA_S-ischiensis_contig10.1328.1|Name=mRNA_S-ischiensis_contig10.1328.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=545bp|location=Sequence derived from alignment at S-ischiensis_contig10:915066..915610+ (Schizocladia ischiensis KU_0333)
GCACATGATGACACCGCAGCACGGATGGATGGAAGGTGTGGGGTGGGGCC
AACCGTGAGGCAGCGCTAAACAGAGCAGACAGACACCCGGTCACTGACGT
TCTCATAGCTTAAGCTAGGTGCTCGTACGTACCTACTTCGTGCGGTACTT
GCTACTCGAAGCACTTGCTTGAACAGAGACAGACACCCCATCACTGACGT
TCTCGTAACTTATACTTGGAAGTACTACGAGTAGGTGCTCGCAAGTACAT
ACTCAGTACGGCACTTACTACTTGCTTGAACAGAGACAGACACCCGATCA
CTGACGTTCTCGTAACTCACACTAGGTGCTCGTACGTACCTGCTCAGTAC
GGTGCTTGCTACTTGCTCGTACGGCATCAGGCGACCAAGTCAGGCACAAG
ACCCATTCGGCCTCCTATTTCTACCAGTGAACAGACACAAGATGGCTGCG
GCGGCAGAGGCAGGCAGAGACCACCGGCGCTGATCAGAGGAGGGCAGGCG
GACTTTGTCGCCGTGGCAGAGGGCAACCGTGCTGGCTGCGGCCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:915066..915610+

>mRNA_S-ischiensis_contig10.1328.1 ID=mRNA_S-ischiensis_contig10.1328.1|Name=mRNA_S-ischiensis_contig10.1328.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=228bp|location=Sequence derived from alignment at S-ischiensis_contig10:915066..915610+ (Schizocladia ischiensis KU_0333)
ATGGATGGAAGATGGATGGAAGGCGACCAAGTCAGGCACAAGACCCATTC
GGCCTCCTATTTCTACCAGTGAACAGACACAAGATGGCTGCGGCGGCAGA
GGCAGGCAGAGACCACCGGCGCTGAGCGACCAAGTCAGGCACAAGACCCA
TTCGGCCTCCTATTTCTACCAGTGAACAGACACAAGATGGCTGCGGCGGC
AGAGGCAGGCAGAGACCACCGGCGCTGA
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