mRNA_S-ischiensis_contig10.1321.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1321.1
Unique NamemRNA_S-ischiensis_contig10.1321.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:849720..850278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1321.1prot_S-ischiensis_contig10.1321.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 849756..850163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.218575-UTR-S-ischiensis_contig10:849719..8497551622815502.218575-UTR-S-ischiensis_contig10:849719..849755Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 849720..849755 +
1695739737.2761164-UTR-S-ischiensis_contig10:849719..8497551695739737.2761164-UTR-S-ischiensis_contig10:849719..849755Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 849720..849755 +
1622815502.2456627-UTR-S-ischiensis_contig10:850163..8502781622815502.2456627-UTR-S-ischiensis_contig10:850163..850278Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 850164..850278 +
1695739737.2937014-UTR-S-ischiensis_contig10:850163..8502781695739737.2937014-UTR-S-ischiensis_contig10:850163..850278Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 850164..850278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.2312148-CDS-S-ischiensis_contig10:849755..8501631622815502.2312148-CDS-S-ischiensis_contig10:849755..850163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 849756..850163 +
1695739737.2849405-CDS-S-ischiensis_contig10:849755..8501631695739737.2849405-CDS-S-ischiensis_contig10:849755..850163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 849756..850163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1321.1

>prot_S-ischiensis_contig10.1321.1 ID=prot_S-ischiensis_contig10.1321.1|Name=mRNA_S-ischiensis_contig10.1321.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
MLMYEPCAGVPAFFPETGQNPERPVLSFSLRTCRRSIRVTDLLEHPGQHR
GSGMSSAQRPPRLKLGAIRRVWGKPCPGPVNTYPDICPPPSWAPLILVMV
GRLWRFGDALTCPARAAGAEGGTRCGSRHHRKPVS*
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mRNA from alignment at S-ischiensis_contig10:849720..850278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1321.1 ID=mRNA_S-ischiensis_contig10.1321.1|Name=mRNA_S-ischiensis_contig10.1321.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=559bp|location=Sequence derived from alignment at S-ischiensis_contig10:849720..850278+ (Schizocladia ischiensis KU_0333)
GGAGGGACTGTCCAAGGTAAGCACGGACCGGTAGAGATGCTCATGTATGA
ACCCTGTGCCGGTGTTCCGGCGTTCTTTCCCGAAACAGGGCAGAACCCGG
AGCGACCGGTGCTCTCTTTTTCTTTGCGGACGTGCCGGCGGTCTATTAGA
GTCACTGACTTGCTAGAACACCCTGGGCAGCACCGGGGGAGTGGCATGAG
CAGCGCTCAAAGACCGCCAAGATTAAAACTGGGTGCAATAAGGCGTGTCT
GGGGGAAACCATGCCCCGGGCCCGTAAACACATATCCCGACATCTGTCCC
CCCCCTTCTTGGGCGCCCCTCATCCTCGTGATGGTCGGTCGCCTGTGGAG
GTTTGGGGATGCCCTCACCTGTCCCGCACGAGCCGCAGGGGCGGAGGGGG
GCACACGGTGTGGTTCGCGGCACCACCGCAAACCCGTCTCGTGAACCCCG
CCCCCCCCCTTCCCTCACCGTCGTCCCCCCTTTTCCCGCTTAGGCCAACG
CAAGAGGTGCCATTTGCATGGCTCGGCCACTGTTGAGACCTGTGCCTCCT
CCATCCCGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:849720..850278+

>mRNA_S-ischiensis_contig10.1321.1 ID=mRNA_S-ischiensis_contig10.1321.1|Name=mRNA_S-ischiensis_contig10.1321.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig10:849720..850278+ (Schizocladia ischiensis KU_0333)
ATGCTCATGTATGAACCCTGTGCCGGTGTTCCGGCGTTCTTTCCCGAAAC
AGGGCAGAACCCGGAGCGACCGGTGCTCTCTTTTTCTTTGCGGACGTGCC
GGCGGTCTATTAGAGTCACTGACTTGCTAGAACACCCTGGGCAGCACCGG
GGGAGTGGCATGAGCAGCGCTCAAAGACCGCCAAGATTAAAACTGGGTGC
AATAAGGCGTGTCTGGGGGAAACCATGCCCCGGGCCCGTAAACACATATC
CCGACATCTGTCCCCCCCCTTCTTGGGCGCCCCTCATCCTCGTGATGGTC
GGTCGCCTGTGGAGGTTTGGGGATGCCCTCACCTGTCCCGCACGAGCCGC
AGGGGCGGAGGGGGGCACACGGTGTGGTTCGCGGCACCACCGCAAACCCG
TCTCGTGAATGCTCATGTATGAACCCTGTGCCGGTGTTCCGGCGTTCTTT
CCCGAAACAGGGCAGAACCCGGAGCGACCGGTGCTCTCTTTTTCTTTGCG
GACGTGCCGGCGGTCTATTAGAGTCACTGACTTGCTAGAACACCCTGGGC
AGCACCGGGGGAGTGGCATGAGCAGCGCTCAAAGACCGCCAAGATTAAAA
CTGGGTGCAATAAGGCGTGTCTGGGGGAAACCATGCCCCGGGCCCGTAAA
CACATATCCCGACATCTGTCCCCCCCCTTCTTGGGCGCCCCTCATCCTCG
TGATGGTCGGTCGCCTGTGGAGGTTTGGGGATGCCCTCACCTGTCCCGCA
CGAGCCGCAGGGGCGGAGGGGGGCACACGGTGTGGTTCGCGGCACCACCG
CAAACCCGTCTCGTGA
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