mRNA_S-ischiensis_contig10.1317.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1317.1
Unique NamemRNA_S-ischiensis_contig10.1317.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:838485..840504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size681
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1317.1prot_S-ischiensis_contig10.1317.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 839962..840426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.038324-UTR-S-ischiensis_contig10:838484..8385281622815502.038324-UTR-S-ischiensis_contig10:838484..838528Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 838485..838528 +
1695739737.215801-UTR-S-ischiensis_contig10:838484..8385281695739737.215801-UTR-S-ischiensis_contig10:838484..838528Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 838485..838528 +
1622815502.0534587-UTR-S-ischiensis_contig10:839867..8399611622815502.0534587-UTR-S-ischiensis_contig10:839867..839961Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 839868..839961 +
1695739737.2286174-UTR-S-ischiensis_contig10:839867..8399611695739737.2286174-UTR-S-ischiensis_contig10:839867..839961Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 839868..839961 +
1622815502.0850577-UTR-S-ischiensis_contig10:840426..8405041622815502.0850577-UTR-S-ischiensis_contig10:840426..840504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 840427..840504 +
1695739737.2476451-UTR-S-ischiensis_contig10:840426..8405041695739737.2476451-UTR-S-ischiensis_contig10:840426..840504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 840427..840504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.0678024-CDS-S-ischiensis_contig10:839961..8404261622815502.0678024-CDS-S-ischiensis_contig10:839961..840426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 839962..840426 +
1695739737.238212-CDS-S-ischiensis_contig10:839961..8404261695739737.238212-CDS-S-ischiensis_contig10:839961..840426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 839962..840426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1317.1

>prot_S-ischiensis_contig10.1317.1 ID=prot_S-ischiensis_contig10.1317.1|Name=mRNA_S-ischiensis_contig10.1317.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
MAKAARQRRADRQAAAPAAAPAALRPSPVGVYGPSGAIPQEQVRLELVQV
MRKVLEEGGGMMSSRDLGRSLASLEAPPRLTGGRAGPGANWLKLLKGNFY
SLNSLLRACPEDFETIKRAVSPSDGEAAKDPDAQLEYFVRAKPLAPGLAP
QPAA*
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mRNA from alignment at S-ischiensis_contig10:838485..840504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1317.1 ID=mRNA_S-ischiensis_contig10.1317.1|Name=mRNA_S-ischiensis_contig10.1317.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2020bp|location=Sequence derived from alignment at S-ischiensis_contig10:838485..840504+ (Schizocladia ischiensis KU_0333)
GATTCGTGGGACGCTGGGACGGAGGCCAAGGAGCTTCGGGAATGGTGAGT
GAGGGCGAGGGCAAGATTGCGGTTGTTGTGGTTGGTTGGTCTGTACTTCG
AAGTATATATATATATATATATGTACTCACGTGGTGCTTGCCGTAGTCCT
GAGACCATTGACCCCGCGCCGTGCGAGGCGGAGCATATATATATATATGT
ACTCACGCGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCGCCTTGT
TCGAGACAGACAGGACCCCTCCCTGCCCTGGCAGAGCCAGGGTGGGAGGG
GGTGGCCACCCCCCCGCCAGAGGCGGAGGGGCGGCCAAGTCCAACCCCCC
CCCATCCCGGGCTCGTGAGAGTCCGGATGGGGGGGGGGCCTCCTCTGCTA
GACCTAGGCCTAGCGGGAGAGGGGGTTCCCTTGCCGTGCCGGGACACGGC
GGGGGGAGATCCAAGATACCCATCTATGTTACCTACTCGCTCCAACCGGG
CACTCAACACCGACACAAGAAAAGCTTTCACAGCACGCTCTACACGACTC
TGCTCCTCCGCTGGCCAACCAGACGTCTCACCTGATGGATCCAGGAGGGT
GATGACCTGATGGCGAGGGGTTGAGTTCCTAGAACGTTTGTAAATATTTT
CCGGGAGCGCGGCTTTGAGCACTGCGTGTAGGGCCACCCTGGCGGCATTG
TATTTGGGGCACTCCGAAGTACAGTTTTTTTTCAGTACTGCAGTACCGTG
CTGCCCCGTCCATACTACAGTGTAGTCGGTCGGGGTGCGCAGTGAATGGC
CTCGGGATTGCGGCAAGCACAGTGTGGCTATATATATATATATATGTACG
AGTACTTCCAAGCACGTGCTGTGCTGTAGTGTATGGTATGGGGTGAGCGT
ACCGCAGCTACTTTCACACATACTGCCAAGCACTTCGAACTGCTTGGAGA
TGCAGAGTGGGCGCGAGAGGCAAGTACTTCGAAGTAGCACAAGTGGTGAA
AAAGATGTACGAGTATGAGCACTCCTGTCGGAGGGCATACCCCGGGGAAG
TTTCGACTTGGGGCCGTCGCCTGAGCACGGACGGTTGTGTCTGTCGCAAG
ACAACTGCAGTACTTAAGCCAATGAGTACTGCAAATTACATATGTGTATG
GTATGTATACCGCACGTAGAGCAGTGCCGTGCTTGTCGGTAAGGGTTAGC
CAATCACGCCGCCTTATTGTTCTCAAATCGGTCGCCGACCTCGTGACCGA
CCTCGTCGTCCACGTCCGCCCCCCCACCCACCCGGACCGCCCCGCCCCGG
CTCGTGCAACAACCCCCCCCCCCCAAAAAAAAACTCCATCTACTGTACAA
TGCTCACGTGTGACCGCAACACAACCCACACAGTCTCTCTGAGGAGAAGG
TGGTGCGGCTCAAGGAGCTCCTTAAGGATCAGGGCCTCCCAATCTACGGC
AAGAAGGCCGAGCTCGTCGAACGGCTAATGGCCAAGGCCGCCCGACAACG
ACGAGCCGACCGCCAGGCAGCGGCGCCCGCCGCGGCGCCAGCGGCGCTCA
GGCCCTCTCCTGTGGGCGTGTATGGGCCCAGCGGGGCTATACCCCAGGAG
CAGGTGCGGTTGGAGCTGGTGCAGGTGATGCGCAAGGTGCTGGAGGAGGG
CGGGGGCATGATGAGCTCGCGGGACTTGGGCCGGAGCCTGGCGAGCCTGG
AGGCGCCCCCGCGGCTGACCGGGGGGCGCGCCGGGCCCGGGGCCAACTGG
CTCAAGCTGCTCAAGGGCAACTTCTACAGCCTCAACAGCCTGCTCCGCGC
CTGCCCGGAAGATTTTGAGACCATCAAGCGCGCAGTGTCGCCGTCGGACG
GCGAAGCCGCCAAGGACCCAGACGCGCAGCTTGAGTACTTTGTCCGCGCG
AAACCGCTCGCGCCGGGGCTGGCTCCACAGCCCGCCGCATGACCGACATA
ACGGCGCGACCGGCCGGGGGGTCCCCGGCCGCCGCGGGGCCCGGGCCCTT
GGGCCTGGAGGCTGAGTGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:838485..840504+

>mRNA_S-ischiensis_contig10.1317.1 ID=mRNA_S-ischiensis_contig10.1317.1|Name=mRNA_S-ischiensis_contig10.1317.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig10:838485..840504+ (Schizocladia ischiensis KU_0333)
ATGGCCAAGGCCGCCCGACAACGACGAGCCGACCGCCAGGCAGCGGCGCC
CGCCGCGGCGCCAGCGGCGCTCAGGCCCTCTCCTGTGGGCGTGTATGGGC
CCAGCGGGGCTATACCCCAGGAGCAGGTGCGGTTGGAGCTGGTGCAGGTG
ATGCGCAAGGTGCTGGAGGAGGGCGGGGGCATGATGAGCTCGCGGGACTT
GGGCCGGAGCCTGGCGAGCCTGGAGGCGCCCCCGCGGCTGACCGGGGGGC
GCGCCGGGCCCGGGGCCAACTGGCTCAAGCTGCTCAAGGGCAACTTCTAC
AGCCTCAACAGCCTGCTCCGCGCCTGCCCGGAAGATTTTGAGACCATCAA
GCGCGCAGTGTCGCCGTCGGACGGCGAAGCCGCCAAGGACCCAGACGCGC
AGCTTGAGTACTTTGTCCGCGCGAAACCGCTCGCGCCGGGGCTGGCTCCA
CAGCCCGCCGCATGAATGGCCAAGGCCGCCCGACAACGACGAGCCGACCG
CCAGGCAGCGGCGCCCGCCGCGGCGCCAGCGGCGCTCAGGCCCTCTCCTG
TGGGCGTGTATGGGCCCAGCGGGGCTATACCCCAGGAGCAGGTGCGGTTG
GAGCTGGTGCAGGTGATGCGCAAGGTGCTGGAGGAGGGCGGGGGCATGAT
GAGCTCGCGGGACTTGGGCCGGAGCCTGGCGAGCCTGGAGGCGCCCCCGC
GGCTGACCGGGGGGCGCGCCGGGCCCGGGGCCAACTGGCTCAAGCTGCTC
AAGGGCAACTTCTACAGCCTCAACAGCCTGCTCCGCGCCTGCCCGGAAGA
TTTTGAGACCATCAAGCGCGCAGTGTCGCCGTCGGACGGCGAAGCCGCCA
AGGACCCAGACGCGCAGCTTGAGTACTTTGTCCGCGCGAAACCGCTCGCG
CCGGGGCTGGCTCCACAGCCCGCCGCATGA
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