mRNA_S-ischiensis_contig10.1296.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1296.1
Unique NamemRNA_S-ischiensis_contig10.1296.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:629633..630961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.9963033-CDS-S-ischiensis_contig10:629632..6296831622815493.9963033-CDS-S-ischiensis_contig10:629632..629683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 629633..629683 +
1695739733.7919433-CDS-S-ischiensis_contig10:629632..6296831695739733.7919433-CDS-S-ischiensis_contig10:629632..629683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 629633..629683 +
1622815494.0117457-CDS-S-ischiensis_contig10:630800..6309591622815494.0117457-CDS-S-ischiensis_contig10:630800..630959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 630801..630959 +
1695739733.8019862-CDS-S-ischiensis_contig10:630800..6309591695739733.8019862-CDS-S-ischiensis_contig10:630800..630959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 630801..630959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1296.1prot_S-ischiensis_contig10.1296.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 629633..630959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1296.1

>prot_S-ischiensis_contig10.1296.1 ID=prot_S-ischiensis_contig10.1296.1|Name=mRNA_S-ischiensis_contig10.1296.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=70bp
LEQRRALAASGGAKGLSVLAAVGVRDAALPGARGRVRDPERGGVPGRRGR
VVGGAAPQDGVRSPHARADG
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mRNA from alignment at S-ischiensis_contig10:629633..630961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1296.1 ID=mRNA_S-ischiensis_contig10.1296.1|Name=mRNA_S-ischiensis_contig10.1296.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-ischiensis_contig10:629633..630961+ (Schizocladia ischiensis KU_0333)
CTGGAGCAACGGCGTGCGCTGGCAGCGTCAGGGGGCGCGAAAGGGCTATC
GGTAAGCGCCACCGCCGCCGCTGCCGCCACTGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCGCTGCCGGCTCTGCCACCGCTGCGGACAGGGACGGACCC
GGCCTCGGAGCCGCAGAATGGTTCGAAGGTGGCCCGTTGGGTTCCTATAG
TGCGGGGTCTGTACGGAGCAGCCGGGCCGGTGCCAGAGCATGGCAACCGT
GCAGCACGAGAGGGATGGGCTCATGGGAAGTGGGGCTCTCTTTGCTCGAG
AGGATCCTCCCCGTGCCCCCCTCCCTCCCCCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTGCCTGCCTGCCTGCCTCCCTCCCTCC
CTCCCTCCATCCCCCGCGCCACCGCCCGCCACACATGGTGGAGCCGTGTG
CCTCTGACCTGGCGGGCTTGGCTGCAGCGCTGCCCTCCTGTTGCCCTGCC
CTGCCGCGCCCGCCTGTTGCGGCAACAATAATTACTGTACCACAAATAGC
CGCCTCTCACTGGACAACGCCTCACACGAGAACACTCAATCTCACACACG
TGCGATTGTACCTCGTTACAATTTTTCAACTGTTTTGATGGCATGCGAGT
TCCGGGCCCCGTCCCAACCACCTAGTTGAATCACTGCCTCAAACGATCCT
CCGTGGTCCTGTTCTAGCTGATTACGCCGCCATTCTGGCGTGTCCGGGCC
CGCCCGGGCCCAGGCCAGGAGGTCCTTGGGACGGGTCGCACCGAGCTGGG
CTGGGCCGGGCTGCCCCGCTGCCAGTAGAAGTACTCTGTGTACCTACGAA
GTGTTTAGAAACCGTTTGTTGTGTTGCCCCCTCACCCACCCCGGATACAC
TCTGCTCCCCCGTGGTTTCAGCACAAGAACTGCTCGACTACTCTACGCCC
AGAGGCGCAACGACAAGACCTGCCCGCGCAGTGCTTGGTACATGCACTGG
GAAACACTACTTACAGTACTAGACACACACAGTTACGGTTCAACCACGCC
GAGAGGTTTCGAACACGGCTGCCTGCCCCACCGCGCGATCGAGGCCAGGT
TCTTGTGAATACTCAATCTCACACACTCGCGGTTGTACCTCGTTACAATT
TATGTGAATCACCGCCAGGTTCTTGCGGCTGTGGGTGTACGAGACGCTGC
GCTCCCCGGGGCGCGGGGGCGGGTACGTGACCCTGAACGAGGTGGTGTTC
CTGGAAGGCGTGGACGTGTTGTCGGAGGAGCCGCGCCTCAAGATGGCGTC
CGCTCGCCGCACGCCCGGGCAGATGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:629633..630961+

>mRNA_S-ischiensis_contig10.1296.1 ID=mRNA_S-ischiensis_contig10.1296.1|Name=mRNA_S-ischiensis_contig10.1296.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=420bp|location=Sequence derived from alignment at S-ischiensis_contig10:629633..630961+ (Schizocladia ischiensis KU_0333)
CTGGAGCAACGGCGTGCGCTGGCAGCGTCAGGGGGCGCGAAAGGGCTATC
GCTGGAGCAACGGCGTGCGCTGGCAGCGTCAGGGGGCGCGAAAGGGCTAT
CGGTTCTTGCGGCTGTGGGTGTACGAGACGCTGCGCTCCCCGGGGCGCGG
GGGCGGGTACGTGACCCTGAACGAGGTGGTGTTCCTGGAAGGCGTGGACG
TGTTGTCGGAGGAGCCGCGCCTCAAGATGGCGTCCGCTCGCCGCACGCCC
GGGCAGATGGAGTTCTTGCGGCTGTGGGTGTACGAGACGCTGCGCTCCCC
GGGGCGCGGGGGCGGGTACGTGACCCTGAACGAGGTGGTGTTCCTGGAAG
GCGTGGACGTGTTGTCGGAGGAGCCGCGCCTCAAGATGGCGTCCGCTCGC
CGCACGCCCGGGCAGATGGA
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