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Homology
BLAST of mRNA_S-ischiensis_contig10.1289.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.730e-28 Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 1
Query: 79 RLEALAHLVSWHVEAAAVQDPDKAKQVIFAYSDAVVSAMQPLPQAPLSRDWEGLMWLLARDDGGAVAGGAAAFSEVEQMVVARFLHSSAKMAEAELSAGKRKGGP---GKEAKQELRESLEQLAEACLRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAA 555
RLEALA LVS H + + + ++ ++ + A +D V A+ LPQAP+ R W L LL D+ G V G + EQ VVA+ L SA+MA AE G+R GKEAKQE+RE++ +LAEACL HLP+LL K+QSDD LALL ELP +P ALA+
Sbjct: 405 RLEALAQLVSTHGKESV--EEERHEEQLLACADLAVQAIWGLPQAPVVRRWRALFTLLENDESG-VGDGGGSLDGGEQTVVAKMLLLSAQMAAAEAKTGRRTAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALAS 563
BLAST of mRNA_S-ischiensis_contig10.1289.1 vs. uniprot
Match: D7FZ11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 4.600e-17 Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 265 GGAVAGGAAAFSEVEQMVVARFLHSSAKMAEAELSAGKRKGGP---GKEAKQELRESLEQLAEACLRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAA 555
GG V G + EQ VVA+ L SA+MA AE G+R GKEAKQE+RE++ +LAEACL HLP+LL K+QSDD LALL ELP +P ALA+
Sbjct: 35 GGCVGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALAS 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 92.0 |
| Seed ortholog evalue | 3.1e-16 |
| Seed eggNOG ortholog | 2880.D7FZ11 |
| Preferred name | IRR1 |
| KEGG ko | ko:K06671 |
| KEGG Pathway | ko04110,ko04111,ko04113,map04110,map04111,map04113 |
| GOs | GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047 |
| EggNOG free text desc. | chromosome segregation |
| EggNOG OGs | COG5537@1,KOG2011@2759 |
| COG Functional cat. | D |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 564 |
| Cds size | 564 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815513.1189914-CDS-S-ischiensis_contig10:573723..573810 | 1622815513.1189914-CDS-S-ischiensis_contig10:573723..573810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 573724..573810 + |
| 1695739742.633094-CDS-S-ischiensis_contig10:573723..573810 | 1695739742.633094-CDS-S-ischiensis_contig10:573723..573810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 573724..573810 + |
| 1622815513.1337905-CDS-S-ischiensis_contig10:575077..575146 | 1622815513.1337905-CDS-S-ischiensis_contig10:575077..575146 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 575078..575146 + |
| 1695739742.6430154-CDS-S-ischiensis_contig10:575077..575146 | 1695739742.6430154-CDS-S-ischiensis_contig10:575077..575146 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 575078..575146 + |
| 1622815513.1466565-CDS-S-ischiensis_contig10:575819..576011 | 1622815513.1466565-CDS-S-ischiensis_contig10:575819..576011 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 575820..576011 + |
| 1695739742.6509464-CDS-S-ischiensis_contig10:575819..576011 | 1695739742.6509464-CDS-S-ischiensis_contig10:575819..576011 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 575820..576011 + |
| 1622815513.1588488-CDS-S-ischiensis_contig10:577046..577109 | 1622815513.1588488-CDS-S-ischiensis_contig10:577046..577109 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 577047..577109 + |
| 1695739742.658828-CDS-S-ischiensis_contig10:577046..577109 | 1695739742.658828-CDS-S-ischiensis_contig10:577046..577109 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 577047..577109 + |
| 1622815513.1755714-CDS-S-ischiensis_contig10:577767..577842 | 1622815513.1755714-CDS-S-ischiensis_contig10:577767..577842 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 577768..577842 + |
| 1695739742.6754518-CDS-S-ischiensis_contig10:577767..577842 | 1695739742.6754518-CDS-S-ischiensis_contig10:577767..577842 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 577768..577842 + |
| 1622815513.1848223-CDS-S-ischiensis_contig10:578520..578598 | 1622815513.1848223-CDS-S-ischiensis_contig10:578520..578598 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 578521..578598 + |
| 1695739742.695824-CDS-S-ischiensis_contig10:578520..578598 | 1695739742.695824-CDS-S-ischiensis_contig10:578520..578598 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 578521..578598 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1289.1 >prot_S-ischiensis_contig10.1289.1 ID=prot_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
AAASAKGRGKGKGKGGGDASALRSGERLEALAHLVSWHVEAAAVQDPDKA KQVIFAYSDAVVSAMQPLPQAPLSRDWEGLMWLLARDDGGAVAGGAAAFS EVEQMVVARFLHSSAKMAEAELSAGKRKGGPGKEAKQELRESLEQLAEAC LRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAATMA back to topmRNA from alignment at S-ischiensis_contig10:573724..578598+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig10.1289.1 ID=mRNA_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4875bp|location=Sequence derived from alignment at S-ischiensis_contig10:573724..578598+ (Schizocladia ischiensis KU_0333) GCGGCGGCTTCGGCCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGG
TGATGCGTCGGCGCTGCGTTCCGGGGAACGTCTGGAGGTGAAAGGGGAGG
GGGGGACTTGACGGAAATGAAAGGAAAGGAAGGTTGCTAAGTACAGTATT
ATCAGGAACAACACGGGGCGAGGTGCGAGCCACGTCACTGAAGACCAGCA
GTGGCCCTTCCTTATAGCTGGCCAGGGCACAGTAGTACTGTGCTCATCTG
TATGTAGAGTAGACATTCGCTGCTCCAGCTCGAACGAGGCGCGGGGTCAA
TGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATATATAGA
CATTCATTGTTGTTGATATTGAGTCGGAAATGCTTCATGCGCGTCAGGTA
TCGCGAGCGTACCTGCAGTACTGCAGTAGATTTGAAGCATGTATTCTACC
GGTACTTCTAACCGCAGTCAAGTGCAAACGCACGGGAGACTGCACAGATC
GCGGCATTGATATCTGAAACGATGGCTAGTTCGAAGTATGAGTACAGCCG
TACACGGAGGCGGGCGTTTGCTCGCCGGAGCACATCCGTATCCCGTGTGT
GTAACTGTCCTCTACAGTACAATACCGTACAGTGTTAGAGTACTGTACAG
TAGTACGCCACACAAACTGCAGGCCATGTCTGGTATATGGTCGAGGCCCA
GGCCGCCAGCATTCTTGGGAATGGTGATAGGTGCCACTACGCTGCTTTGA
GGCGAATGAGTGAGTGACTTCTGGTTGATACCGCGTCGATTTTTTTGTCT
GGCCGTCTTAGACGACTGTGAAGGATGATGGACGTGTCCGCCAAGTTCGC
CAGGGGGTTGTCTAGTACTACAGTGCAGTAGTGTGCGCCACAAGAAGCGC
TTCCAGGTGGCCACATTCCCTGCAGGCAACTCCATTTTTCTGGATTGATT
TCACGGTTTTTCAAGGTGCGGCGGTTGTATTTTTTTCTGTTTTCCGATGA
CATGCGGGTTCCGGGCCCATCCCAAAGGGGGGACCTCACCGAAGAGTTAA
GCTAGCCCTTCTTTCACTCACAGGGCACAAAAACATGGCAAAGAAGCAAC
ACGCAGGGGCGATGCAGGGGGGTCTCTCTCGTGCTTGCATTTTTGGGGTC
AAGTGCCGGCCATGATGGCAGATCTGGTGACCTGAGTGATGCCACGCCTT
GAGTGTCGTGTCGTGAAATGCCCACGACAATTCCCCCGTGACTGCACCTG
TGATCCTTGGTGAAACTCTTGTGAACTCGGCGATTTTTGGCCCATTTGCG
GTGAGCGACCGCTGGTGTCCCTGTCTCTGTGATGTGATTTGACTGTCACG
GCAGGCGTTGGCCCACCTGGTGAGCTGGCATGTGGAGGCGGCGGCCGTGC
AGGACCCGGACAAGGCCAAGCAGGCAAGTACAGCACAGTGTACAGTATCC
GCAGACTAGTCTGTAGTGTGCAGTAGTCGTATTCTGTACTGTGCGCTTCG
AAGTACAGGCGTCAAGTACGGTACAGTACATTACATGGGAGTGCTGTAAG
AACATAGCCGTACAGCAACGCTGCACTTGTACGGGACTATCTACCTGCAG
CTTTGCACTGTTGCACCGAAGCCACTCTGGCGCCAAGTGAGGTAGGTATA
TTCATGCTGCGTACTACAGTAGGTACGTACTCTACGGCTTCAGTTGGGGC
TGTTTGAAAGACGACCCTCGCACACACACACACACACACACACACACATG
CCATGAACACTTTCCGTTATTTCCATGCGTGTACCACATGGAAGTACAGT
ACACATTGCGCTTTGAACACCAATGCGGGCAAAAGTCTGCATCTGTCACA
CAGATGGGGGACGGACATGGCACAGCACCGCAGACCACCTTTCAGCGGCA
CCGAAGCGGCATCTTTCTTTCCCTTCCAATCGTGGCAGGGACACCACCAT
TGCATGACATAGCACCATCGCCATCGCCTGCCAACACCGACCCTCCGTGA
CGCGCACCGCGACCATACCGTCCTATCCTGTGGTCGGCACACCAGGTCAT
CTTTGCCTATTGACCGTACTCTCCTGTCCTGTACTCCGCACACCAGGTCA
TCTTTGCCTATTCGGATGCGGTGGTGTCAGCCATGCAACCCTTGCCGCAG
GCACCGCTCTCCCGGGACTGGGAGGGGCTCATGTGGCTCTTGGCGCGGGA
CGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCGTTCAGTGAAGTGGAGC
AGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGCCAAGGTGAGAAAGCTC
GCTTCTTTCTTGGCTTTGTGTCTTGATTGTCTTGTTGATTTCGACCGCCT
TGTGCTTTTGCCTATCGCTCCGCCGCCAATGGCGTGCGGTCAATCCATTG
GGCCTCGAGACTACGGCAAGCACAACTTGAGTACATGTGTACGGGTACTC
TCTATGTTTGTACGAGTATGTACTCGTACTCGAGTATAGGTGCTTTTGCC
ATAGTGCTCGAGCGTAGCCCTGACAAGGCGCCATTGTGACCATACGCACC
CCACGATGGGGCGGAGCAGCATTCTATGCTCTCATGTTGGGCCTCTGTGT
CGGCTGGGGTTCTCGATCAGTCCAAGTGCTGGGACATGACACTCTTCAAA
GCACTACAGGAATCTTGCGCTCCCAAAGCATGTACTTACAAGTAGATCCC
AGTTCTGCTGCACTGCTACTGCCGTGCTCAGCGTAGAAATTTGTTGGTTT
CCCATGGCTCGCTGATGTAGCGCACGTGTGGGACTCCGAAGGATCACGCC
CCTAGAAGCGGTTGTAAGGAAGTGCAAAGGCCATGAAGCACTCGCTTGGA
AGTACTTACTATGGTACCCCGAGGTACCGCCAAGTACTTACGGTACCCGG
TCTTGCATGTCCGAGGGACTGGCCCTGGCGCTCGCTGCTCATGTGTGTCG
TGATTCGCTGAATGGAACAGCCGCCGAGCTTTGGGGCATTGTATCGTTCT
TCAGCCAAGACTCTGTCTCACTGTGCTGATGTTCGAAGAAGTCGTGCTCG
GCAGCATCGCAAGTTTCCCTCTCATGGCGGGTATTTCTGCCGGCTTCATT
CATCGCGGGCACTTATTTCCGCCGGCACAGGGCACAGGGTCCTGGGCCTG
CCCACAGATGCCAAGTATGTCTATGGCACCTGCAATATTCGTACGGTAAG
TACGTGGGTTGTGCCCCTCAGATGGCGGAGGTGGAAGCACAGCCAGTGGC
CGACACTGCAACGTCATTGCTTTGGTTTGATCTGCCGCATCCCGGTGCGA
CGTGTGCCTTCGCTTCCATTCAGATGGCGGAGGCGGAGCTTTCTGCCGGC
AAGCGCAAGGGCGGGCCCGGCAAGGAGGCCAAGCAGGTGATGCGTGACAT
TGTGTGTTGCTTGTACCTCGAAGAGTACAGTAGGTGTACTGCCTACGTTG
CCGCAAGCTGTGGTACTCAAAGTGTACTCGCCTCGCGTGTTGGCGAGCAG
ACCAGATAGATAGATCATCTGTACTACTACTGTACACTACAGTACTTCTA
TACAGTGCGCGTCACTGAGTAAGAAACTCTGAAATTCGAGTCCGGGGGCT
GTTTCTTCTGTTTTTGGCCGAGCTAGCCTCTTTTCTCGATTGCCACTTTC
TTGCTCTGCAGAACGTGGTACAGGAGCAGTGCGATTTTCAGTGCCGGTCC
TCGCGCTGAGCCCAGGGTGTTTCTATGCAGAAGGCCCCCCGGGTTCGAGT
CCGGATGGCGCACTGAGGAAAAAAATCGTTTTCTTATCTCCCGGACGGCC
GCAGCCCCCCCGAGTTTCTTACTTCGTATCTGCCTGGGCGCCGGAGCCGC
TATGTTCTTATCCCGCGCTTTCTCATTTCGTGTCGCACACTGTAGTACTG
CTACTTACAGTAGTCTGTTTCCCCTCTCCGCCCGCCCGCCCGCCCGCCCA
CCGACCGGTCTGTCTGTCTATTTGGCCGTATTTCCGGCTGCCTGCCTGCC
TGCCTGCCGGCCTGCCTGCCTGCCCCTTCCTCTGTGGATGGCAGGAGCTG
CGGGAGTCCCTTGAGCAACTGGCCGAGGCCTGCCTGCGACACCTGCCCAG
CCTGCTGGACAAGTTCCAGGCATGATACCGCGCCTTCCACTATTACGCTG
GCTGCAATGTGTCGTTCCACTGAACTTGAGCAGCACAAGTATTTTTTCGT
CACTTTGTTTGTTGACTTGACATCCTCCGTCACAGCGTGCGTGACCGCGT
TGCACGAGTAGCGTAGGTTGTGCAGTGAGATGTCTTTTGACATTGCCTGC
CGGCTGGGCAATTTGAGAGGAAAAGACCCCGAGTTTGTATGGGCCCAAGT
TTTTCTCACAGACATCCAATTTCAGCTCTTGGATGTGCCCTCCAAGCTCA
TGTTCCTTTCGTTGGCGCTTTGCTGTGCTTCTCCTATCCTTGGCCCGCAA
ATAGCGCAGGTCGCCCAGACCCCCCCGCCTCCCCCCCTCCCCCGCTCTCC
ACCCAGGTCGAACGATAGCAGCTTCCAGAAACTTGAGCCTGTTGTAACCC
TCACCCCAACCTAACCCTATAATCCCGCCGAACACACACTCTCTCTCTCT
CTCTCTCTCTCTCCCTCCTTTCCCCGGCAGTGGGACGCGAAGGAATCATC
ACAACCCTATCTTTAACCCTACCCTGTACTCGTGTGGTGTCGGCATCTAA
GAACTGAATCCACCACCCCAAACCGAACCCTCAATCCAAACCCCCACCCA
GCCCGACCTTTGAGTTTCCAAACGCCCCCTCCCCCTGCACCCCCCAGTCG
GACGACACCACCCTGGCCCTGCTCACGGAACTGCCCCGGCGCCTGCCGGA
CCACGCCCTCGCGGCGACCATGGCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig10:573724..578598+ >mRNA_S-ischiensis_contig10.1289.1 ID=mRNA_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1128bp|location=Sequence derived from alignment at S-ischiensis_contig10:573724..578598+ (Schizocladia ischiensis KU_0333) GCGGCGGCTTCGGCCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGG TGATGCGTCGGCGCTGCGTTCCGGGGAACGTCTGGAGGCGGCGGCTTCGG CCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGGTGATGCGTCGGCG CTGCGTTCCGGGGAACGTCTGGAGGCGTTGGCCCACCTGGTGAGCTGGCA TGTGGAGGCGGCGGCCGTGCAGGACCCGGACAAGGCCAAGCAGGCGTTGG CCCACCTGGTGAGCTGGCATGTGGAGGCGGCGGCCGTGCAGGACCCGGAC AAGGCCAAGCAGGTCATCTTTGCCTATTCGGATGCGGTGGTGTCAGCCAT GCAACCCTTGCCGCAGGCACCGCTCTCCCGGGACTGGGAGGGGCTCATGT GGCTCTTGGCGCGGGACGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCG TTCAGTGAAGTGGAGCAGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGC CAAGGTCATCTTTGCCTATTCGGATGCGGTGGTGTCAGCCATGCAACCCT TGCCGCAGGCACCGCTCTCCCGGGACTGGGAGGGGCTCATGTGGCTCTTG GCGCGGGACGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCGTTCAGTGA AGTGGAGCAGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGCCAAGATGG CGGAGGCGGAGCTTTCTGCCGGCAAGCGCAAGGGCGGGCCCGGCAAGGAG GCCAAGCAGATGGCGGAGGCGGAGCTTTCTGCCGGCAAGCGCAAGGGCGG GCCCGGCAAGGAGGCCAAGCAGGAGCTGCGGGAGTCCCTTGAGCAACTGG CCGAGGCCTGCCTGCGACACCTGCCCAGCCTGCTGGACAAGTTCCAGGAG CTGCGGGAGTCCCTTGAGCAACTGGCCGAGGCCTGCCTGCGACACCTGCC CAGCCTGCTGGACAAGTTCCAGTCGGACGACACCACCCTGGCCCTGCTCA CGGAACTGCCCCGGCGCCTGCCGGACCACGCCCTCGCGGCGACCATGGCC TCGGACGACACCACCCTGGCCCTGCTCACGGAACTGCCCCGGCGCCTGCC GGACCACGCCCTCGCGGCGACCATGGCC back to top
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