mRNA_S-ischiensis_contig10.1289.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1289.1
Unique NamemRNA_S-ischiensis_contig10.1289.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1289.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.730e-28
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 1
Query:   79 RLEALAHLVSWHVEAAAVQDPDKAKQVIFAYSDAVVSAMQPLPQAPLSRDWEGLMWLLARDDGGAVAGGAAAFSEVEQMVVARFLHSSAKMAEAELSAGKRKGGP---GKEAKQELRESLEQLAEACLRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAA 555
            RLEALA LVS H + +   + ++ ++ + A +D  V A+  LPQAP+ R W  L  LL  D+ G V  G  +    EQ VVA+ L  SA+MA AE   G+R       GKEAKQE+RE++ +LAEACL HLP+LL K+QSDD  LALL ELP  +P  ALA+
Sbjct:  405 RLEALAQLVSTHGKESV--EEERHEEQLLACADLAVQAIWGLPQAPVVRRWRALFTLLENDESG-VGDGGGSLDGGEQTVVAKMLLLSAQMAAAEAKTGRRTAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALAS 563          
BLAST of mRNA_S-ischiensis_contig10.1289.1 vs. uniprot
Match: D7FZ11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.600e-17
Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  265 GGAVAGGAAAFSEVEQMVVARFLHSSAKMAEAELSAGKRKGGP---GKEAKQELRESLEQLAEACLRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAA 555
            GG V  G  +    EQ VVA+ L  SA+MA AE   G+R       GKEAKQE+RE++ +LAEACL HLP+LL K+QSDD  LALL ELP  +P  ALA+
Sbjct:   35 GGCVGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALAS 134          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7R4_9PHAE2.730e-2848.15SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZ11_ECTSI4.600e-1754.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:573724..578598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog2880.D7FZ11
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1289.1prot_S-ischiensis_contig10.1289.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 573724..578598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.1189914-CDS-S-ischiensis_contig10:573723..5738101622815513.1189914-CDS-S-ischiensis_contig10:573723..573810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 573724..573810 +
1695739742.633094-CDS-S-ischiensis_contig10:573723..5738101695739742.633094-CDS-S-ischiensis_contig10:573723..573810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 573724..573810 +
1622815513.1337905-CDS-S-ischiensis_contig10:575077..5751461622815513.1337905-CDS-S-ischiensis_contig10:575077..575146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 575078..575146 +
1695739742.6430154-CDS-S-ischiensis_contig10:575077..5751461695739742.6430154-CDS-S-ischiensis_contig10:575077..575146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 575078..575146 +
1622815513.1466565-CDS-S-ischiensis_contig10:575819..5760111622815513.1466565-CDS-S-ischiensis_contig10:575819..576011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 575820..576011 +
1695739742.6509464-CDS-S-ischiensis_contig10:575819..5760111695739742.6509464-CDS-S-ischiensis_contig10:575819..576011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 575820..576011 +
1622815513.1588488-CDS-S-ischiensis_contig10:577046..5771091622815513.1588488-CDS-S-ischiensis_contig10:577046..577109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 577047..577109 +
1695739742.658828-CDS-S-ischiensis_contig10:577046..5771091695739742.658828-CDS-S-ischiensis_contig10:577046..577109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 577047..577109 +
1622815513.1755714-CDS-S-ischiensis_contig10:577767..5778421622815513.1755714-CDS-S-ischiensis_contig10:577767..577842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 577768..577842 +
1695739742.6754518-CDS-S-ischiensis_contig10:577767..5778421695739742.6754518-CDS-S-ischiensis_contig10:577767..577842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 577768..577842 +
1622815513.1848223-CDS-S-ischiensis_contig10:578520..5785981622815513.1848223-CDS-S-ischiensis_contig10:578520..578598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 578521..578598 +
1695739742.695824-CDS-S-ischiensis_contig10:578520..5785981695739742.695824-CDS-S-ischiensis_contig10:578520..578598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 578521..578598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1289.1

>prot_S-ischiensis_contig10.1289.1 ID=prot_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
AAASAKGRGKGKGKGGGDASALRSGERLEALAHLVSWHVEAAAVQDPDKA
KQVIFAYSDAVVSAMQPLPQAPLSRDWEGLMWLLARDDGGAVAGGAAAFS
EVEQMVVARFLHSSAKMAEAELSAGKRKGGPGKEAKQELRESLEQLAEAC
LRHLPSLLDKFQSDDTTLALLTELPRRLPDHALAATMA
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mRNA from alignment at S-ischiensis_contig10:573724..578598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1289.1 ID=mRNA_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4875bp|location=Sequence derived from alignment at S-ischiensis_contig10:573724..578598+ (Schizocladia ischiensis KU_0333)
GCGGCGGCTTCGGCCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGG TGATGCGTCGGCGCTGCGTTCCGGGGAACGTCTGGAGGTGAAAGGGGAGG GGGGGACTTGACGGAAATGAAAGGAAAGGAAGGTTGCTAAGTACAGTATT ATCAGGAACAACACGGGGCGAGGTGCGAGCCACGTCACTGAAGACCAGCA GTGGCCCTTCCTTATAGCTGGCCAGGGCACAGTAGTACTGTGCTCATCTG TATGTAGAGTAGACATTCGCTGCTCCAGCTCGAACGAGGCGCGGGGTCAA TGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATATATAGA CATTCATTGTTGTTGATATTGAGTCGGAAATGCTTCATGCGCGTCAGGTA TCGCGAGCGTACCTGCAGTACTGCAGTAGATTTGAAGCATGTATTCTACC GGTACTTCTAACCGCAGTCAAGTGCAAACGCACGGGAGACTGCACAGATC GCGGCATTGATATCTGAAACGATGGCTAGTTCGAAGTATGAGTACAGCCG TACACGGAGGCGGGCGTTTGCTCGCCGGAGCACATCCGTATCCCGTGTGT GTAACTGTCCTCTACAGTACAATACCGTACAGTGTTAGAGTACTGTACAG TAGTACGCCACACAAACTGCAGGCCATGTCTGGTATATGGTCGAGGCCCA GGCCGCCAGCATTCTTGGGAATGGTGATAGGTGCCACTACGCTGCTTTGA GGCGAATGAGTGAGTGACTTCTGGTTGATACCGCGTCGATTTTTTTGTCT GGCCGTCTTAGACGACTGTGAAGGATGATGGACGTGTCCGCCAAGTTCGC CAGGGGGTTGTCTAGTACTACAGTGCAGTAGTGTGCGCCACAAGAAGCGC TTCCAGGTGGCCACATTCCCTGCAGGCAACTCCATTTTTCTGGATTGATT TCACGGTTTTTCAAGGTGCGGCGGTTGTATTTTTTTCTGTTTTCCGATGA CATGCGGGTTCCGGGCCCATCCCAAAGGGGGGACCTCACCGAAGAGTTAA GCTAGCCCTTCTTTCACTCACAGGGCACAAAAACATGGCAAAGAAGCAAC ACGCAGGGGCGATGCAGGGGGGTCTCTCTCGTGCTTGCATTTTTGGGGTC AAGTGCCGGCCATGATGGCAGATCTGGTGACCTGAGTGATGCCACGCCTT GAGTGTCGTGTCGTGAAATGCCCACGACAATTCCCCCGTGACTGCACCTG TGATCCTTGGTGAAACTCTTGTGAACTCGGCGATTTTTGGCCCATTTGCG GTGAGCGACCGCTGGTGTCCCTGTCTCTGTGATGTGATTTGACTGTCACG GCAGGCGTTGGCCCACCTGGTGAGCTGGCATGTGGAGGCGGCGGCCGTGC AGGACCCGGACAAGGCCAAGCAGGCAAGTACAGCACAGTGTACAGTATCC GCAGACTAGTCTGTAGTGTGCAGTAGTCGTATTCTGTACTGTGCGCTTCG AAGTACAGGCGTCAAGTACGGTACAGTACATTACATGGGAGTGCTGTAAG AACATAGCCGTACAGCAACGCTGCACTTGTACGGGACTATCTACCTGCAG CTTTGCACTGTTGCACCGAAGCCACTCTGGCGCCAAGTGAGGTAGGTATA TTCATGCTGCGTACTACAGTAGGTACGTACTCTACGGCTTCAGTTGGGGC TGTTTGAAAGACGACCCTCGCACACACACACACACACACACACACACATG CCATGAACACTTTCCGTTATTTCCATGCGTGTACCACATGGAAGTACAGT ACACATTGCGCTTTGAACACCAATGCGGGCAAAAGTCTGCATCTGTCACA CAGATGGGGGACGGACATGGCACAGCACCGCAGACCACCTTTCAGCGGCA CCGAAGCGGCATCTTTCTTTCCCTTCCAATCGTGGCAGGGACACCACCAT TGCATGACATAGCACCATCGCCATCGCCTGCCAACACCGACCCTCCGTGA CGCGCACCGCGACCATACCGTCCTATCCTGTGGTCGGCACACCAGGTCAT CTTTGCCTATTGACCGTACTCTCCTGTCCTGTACTCCGCACACCAGGTCA TCTTTGCCTATTCGGATGCGGTGGTGTCAGCCATGCAACCCTTGCCGCAG GCACCGCTCTCCCGGGACTGGGAGGGGCTCATGTGGCTCTTGGCGCGGGA CGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCGTTCAGTGAAGTGGAGC AGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGCCAAGGTGAGAAAGCTC GCTTCTTTCTTGGCTTTGTGTCTTGATTGTCTTGTTGATTTCGACCGCCT TGTGCTTTTGCCTATCGCTCCGCCGCCAATGGCGTGCGGTCAATCCATTG GGCCTCGAGACTACGGCAAGCACAACTTGAGTACATGTGTACGGGTACTC TCTATGTTTGTACGAGTATGTACTCGTACTCGAGTATAGGTGCTTTTGCC ATAGTGCTCGAGCGTAGCCCTGACAAGGCGCCATTGTGACCATACGCACC CCACGATGGGGCGGAGCAGCATTCTATGCTCTCATGTTGGGCCTCTGTGT CGGCTGGGGTTCTCGATCAGTCCAAGTGCTGGGACATGACACTCTTCAAA GCACTACAGGAATCTTGCGCTCCCAAAGCATGTACTTACAAGTAGATCCC AGTTCTGCTGCACTGCTACTGCCGTGCTCAGCGTAGAAATTTGTTGGTTT CCCATGGCTCGCTGATGTAGCGCACGTGTGGGACTCCGAAGGATCACGCC CCTAGAAGCGGTTGTAAGGAAGTGCAAAGGCCATGAAGCACTCGCTTGGA AGTACTTACTATGGTACCCCGAGGTACCGCCAAGTACTTACGGTACCCGG TCTTGCATGTCCGAGGGACTGGCCCTGGCGCTCGCTGCTCATGTGTGTCG TGATTCGCTGAATGGAACAGCCGCCGAGCTTTGGGGCATTGTATCGTTCT TCAGCCAAGACTCTGTCTCACTGTGCTGATGTTCGAAGAAGTCGTGCTCG GCAGCATCGCAAGTTTCCCTCTCATGGCGGGTATTTCTGCCGGCTTCATT CATCGCGGGCACTTATTTCCGCCGGCACAGGGCACAGGGTCCTGGGCCTG CCCACAGATGCCAAGTATGTCTATGGCACCTGCAATATTCGTACGGTAAG TACGTGGGTTGTGCCCCTCAGATGGCGGAGGTGGAAGCACAGCCAGTGGC CGACACTGCAACGTCATTGCTTTGGTTTGATCTGCCGCATCCCGGTGCGA CGTGTGCCTTCGCTTCCATTCAGATGGCGGAGGCGGAGCTTTCTGCCGGC AAGCGCAAGGGCGGGCCCGGCAAGGAGGCCAAGCAGGTGATGCGTGACAT TGTGTGTTGCTTGTACCTCGAAGAGTACAGTAGGTGTACTGCCTACGTTG CCGCAAGCTGTGGTACTCAAAGTGTACTCGCCTCGCGTGTTGGCGAGCAG ACCAGATAGATAGATCATCTGTACTACTACTGTACACTACAGTACTTCTA TACAGTGCGCGTCACTGAGTAAGAAACTCTGAAATTCGAGTCCGGGGGCT GTTTCTTCTGTTTTTGGCCGAGCTAGCCTCTTTTCTCGATTGCCACTTTC TTGCTCTGCAGAACGTGGTACAGGAGCAGTGCGATTTTCAGTGCCGGTCC TCGCGCTGAGCCCAGGGTGTTTCTATGCAGAAGGCCCCCCGGGTTCGAGT CCGGATGGCGCACTGAGGAAAAAAATCGTTTTCTTATCTCCCGGACGGCC GCAGCCCCCCCGAGTTTCTTACTTCGTATCTGCCTGGGCGCCGGAGCCGC TATGTTCTTATCCCGCGCTTTCTCATTTCGTGTCGCACACTGTAGTACTG CTACTTACAGTAGTCTGTTTCCCCTCTCCGCCCGCCCGCCCGCCCGCCCA CCGACCGGTCTGTCTGTCTATTTGGCCGTATTTCCGGCTGCCTGCCTGCC TGCCTGCCGGCCTGCCTGCCTGCCCCTTCCTCTGTGGATGGCAGGAGCTG CGGGAGTCCCTTGAGCAACTGGCCGAGGCCTGCCTGCGACACCTGCCCAG CCTGCTGGACAAGTTCCAGGCATGATACCGCGCCTTCCACTATTACGCTG GCTGCAATGTGTCGTTCCACTGAACTTGAGCAGCACAAGTATTTTTTCGT CACTTTGTTTGTTGACTTGACATCCTCCGTCACAGCGTGCGTGACCGCGT TGCACGAGTAGCGTAGGTTGTGCAGTGAGATGTCTTTTGACATTGCCTGC CGGCTGGGCAATTTGAGAGGAAAAGACCCCGAGTTTGTATGGGCCCAAGT TTTTCTCACAGACATCCAATTTCAGCTCTTGGATGTGCCCTCCAAGCTCA TGTTCCTTTCGTTGGCGCTTTGCTGTGCTTCTCCTATCCTTGGCCCGCAA ATAGCGCAGGTCGCCCAGACCCCCCCGCCTCCCCCCCTCCCCCGCTCTCC ACCCAGGTCGAACGATAGCAGCTTCCAGAAACTTGAGCCTGTTGTAACCC TCACCCCAACCTAACCCTATAATCCCGCCGAACACACACTCTCTCTCTCT CTCTCTCTCTCTCCCTCCTTTCCCCGGCAGTGGGACGCGAAGGAATCATC ACAACCCTATCTTTAACCCTACCCTGTACTCGTGTGGTGTCGGCATCTAA GAACTGAATCCACCACCCCAAACCGAACCCTCAATCCAAACCCCCACCCA GCCCGACCTTTGAGTTTCCAAACGCCCCCTCCCCCTGCACCCCCCAGTCG GACGACACCACCCTGGCCCTGCTCACGGAACTGCCCCGGCGCCTGCCGGA CCACGCCCTCGCGGCGACCATGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:573724..578598+

>mRNA_S-ischiensis_contig10.1289.1 ID=mRNA_S-ischiensis_contig10.1289.1|Name=mRNA_S-ischiensis_contig10.1289.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1128bp|location=Sequence derived from alignment at S-ischiensis_contig10:573724..578598+ (Schizocladia ischiensis KU_0333)
GCGGCGGCTTCGGCCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGG
TGATGCGTCGGCGCTGCGTTCCGGGGAACGTCTGGAGGCGGCGGCTTCGG
CCAAGGGCCGGGGCAAGGGCAAGGGCAAGGGCGGCGGTGATGCGTCGGCG
CTGCGTTCCGGGGAACGTCTGGAGGCGTTGGCCCACCTGGTGAGCTGGCA
TGTGGAGGCGGCGGCCGTGCAGGACCCGGACAAGGCCAAGCAGGCGTTGG
CCCACCTGGTGAGCTGGCATGTGGAGGCGGCGGCCGTGCAGGACCCGGAC
AAGGCCAAGCAGGTCATCTTTGCCTATTCGGATGCGGTGGTGTCAGCCAT
GCAACCCTTGCCGCAGGCACCGCTCTCCCGGGACTGGGAGGGGCTCATGT
GGCTCTTGGCGCGGGACGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCG
TTCAGTGAAGTGGAGCAGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGC
CAAGGTCATCTTTGCCTATTCGGATGCGGTGGTGTCAGCCATGCAACCCT
TGCCGCAGGCACCGCTCTCCCGGGACTGGGAGGGGCTCATGTGGCTCTTG
GCGCGGGACGACGGCGGCGCCGTGGCAGGGGGGGCGGCTGCGTTCAGTGA
AGTGGAGCAGATGGTAGTGGCCCGCTTCTTGCACAGCAGCGCCAAGATGG
CGGAGGCGGAGCTTTCTGCCGGCAAGCGCAAGGGCGGGCCCGGCAAGGAG
GCCAAGCAGATGGCGGAGGCGGAGCTTTCTGCCGGCAAGCGCAAGGGCGG
GCCCGGCAAGGAGGCCAAGCAGGAGCTGCGGGAGTCCCTTGAGCAACTGG
CCGAGGCCTGCCTGCGACACCTGCCCAGCCTGCTGGACAAGTTCCAGGAG
CTGCGGGAGTCCCTTGAGCAACTGGCCGAGGCCTGCCTGCGACACCTGCC
CAGCCTGCTGGACAAGTTCCAGTCGGACGACACCACCCTGGCCCTGCTCA
CGGAACTGCCCCGGCGCCTGCCGGACCACGCCCTCGCGGCGACCATGGCC
TCGGACGACACCACCCTGGCCCTGCTCACGGAACTGCCCCGGCGCCTGCC
GGACCACGCCCTCGCGGCGACCATGGCC
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