|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_004100.1 |
| Exons | 2 |
| Model size | 429 |
| Cds size | 297 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815512.469165-UTR-S-ischiensis_contig10:543947..543955 | 1622815512.469165-UTR-S-ischiensis_contig10:543947..543955 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 543948..543955 + |
| 1695739742.332893-UTR-S-ischiensis_contig10:543947..543955 | 1695739742.332893-UTR-S-ischiensis_contig10:543947..543955 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 543948..543955 + |
| 1622815512.5104177-UTR-S-ischiensis_contig10:545027..545151 | 1622815512.5104177-UTR-S-ischiensis_contig10:545027..545151 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 545028..545151 + |
| 1695739742.3613164-UTR-S-ischiensis_contig10:545027..545151 | 1695739742.3613164-UTR-S-ischiensis_contig10:545027..545151 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig10 545028..545151 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815512.4826384-CDS-S-ischiensis_contig10:543955..544060 | 1622815512.4826384-CDS-S-ischiensis_contig10:543955..544060 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 543956..544060 + |
| 1695739742.3422556-CDS-S-ischiensis_contig10:543955..544060 | 1695739742.3422556-CDS-S-ischiensis_contig10:543955..544060 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 543956..544060 + |
| 1622815512.498694-CDS-S-ischiensis_contig10:544835..545027 | 1622815512.498694-CDS-S-ischiensis_contig10:544835..545027 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 544836..545027 + |
| 1695739742.3508267-CDS-S-ischiensis_contig10:544835..545027 | 1695739742.3508267-CDS-S-ischiensis_contig10:544835..545027 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig10 544836..545027 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1279.1 >prot_S-ischiensis_contig10.1279.1 ID=prot_S-ischiensis_contig10.1279.1|Name=mRNA_S-ischiensis_contig10.1279.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp
MKRYLVSYRPRHGEVTVTMRAAVVAGFRLSPDYPKVPGGARLTALAGIGG
WSAPEMARLRGRINDLGLVTLMDTMDRLEEAVTALDSEGDSVAAAAGC* back to topmRNA from alignment at S-ischiensis_contig10:543948..545151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig10.1279.1 ID=mRNA_S-ischiensis_contig10.1279.1|Name=mRNA_S-ischiensis_contig10.1279.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1204bp|location=Sequence derived from alignment at S-ischiensis_contig10:543948..545151+ (Schizocladia ischiensis KU_0333)
GCCTGCTGATGAAGCGGTACCTGGTCTCGTACCGGCCGCGGCACGGCGAG
GTCACCGTGACGATGCGTGCCGCGGTGGTGGCCGGCTTCCGGCTGAGCCC
TGACTACCCAAAGGTGTGACTACCCTGTCCCATTCCTCTCCCTCCTCTTC
CTCTTCCCCCCaCCCTccCCCCCCTCCTCCTCCTCCTCCCCCTCGTCCCT
GTCCACCTCCCCTTCCCCACACAGTTTTCCCCTGGCGAGCTAAGGAAGGG
CCGCTGTTGAGGTCTCTAGTGACGTGGCTTGCACCTCGCCCCGTGTTGTT
CCTTATAGTACTAGTACTCGAGTACGAGAACAGCCAATCTCACACACGTG
CGATTGTGCCTCGTTACAATTGATATGAATCACATACCTAAAGGTGCGAC
CCCCGTGGGGTGGGATGGCATGGGGTGGGTGGACGATGGGCTGGGTTGGG
TAGTAGCGGTGACAGTGGTGGCAACGACGGTGTTGGCTCTGCAGCGCTGT
GGATACACGTGTTTTTGCCCGCACACTCTGAGGTCACGACGAGCTCACTG
GTGCGCACGGCGACACGCTCGCGCCCCCCCCCCCTCCCTCGTGCTGCTGC
AGTATTTTAAGTACTTGCTGCACGTACGAGTACTCGTACTAGCTCTAGTA
GTTGTTCTTCCAAGTACTGTCACGCAATGGGGCCTGTTCTAAGGCTAGAG
CTGCATCCTACGGCGTTCACAGCGGCCAGGTTTTCGCACCACCAATGGAA
CCCCCTCCTCAGCCTGCGCTTCCACCGTCAAAGCTGTGCACCACCGAGGC
ACGAGCCTGGAGCACCAAGTTGCAAACTAAGCTTTGCTTCTGTGGCATGC
CCGCCTCGCCCTCCCCCGCGCCTCGTGACACGGCCCAGGTGCCCGGAGGA
GCTCGCCTCACGGCCTTGGCAGGCATTGGCGGCTGGTCGGCGCCGGAGAT
GGCGAGGTTGCGAGGGCGGATCAATGACCTGGGCCTGGTGACTCTCATGG
ACACTATGGACAGGCTGGAGGAGGCCGTGACCGCGCTGGACTCGGAGGGG
GACTCAGTGGCAGCGGCTGCTGGCTGCTGACTACGCTTGCCTCCTCCTGC
AACTACAATATATGTACTCATTGGTTTGTCTTGCGACATAGCCGTGCGTG
CAATGCCGACAGCCCTAAGTCGAAACTTCGGGTTTGCCCTCCGACAGGAG
TAGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig10:543948..545151+ >mRNA_S-ischiensis_contig10.1279.1 ID=mRNA_S-ischiensis_contig10.1279.1|Name=mRNA_S-ischiensis_contig10.1279.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig10:543948..545151+ (Schizocladia ischiensis KU_0333)
ATGAAGCGGTACCTGGTCTCGTACCGGCCGCGGCACGGCGAGGTCACCGT
GACGATGCGTGCCGCGGTGGTGGCCGGCTTCCGGCTGAGCCCTGACTACC
CAAAGATGAAGCGGTACCTGGTCTCGTACCGGCCGCGGCACGGCGAGGTC
ACCGTGACGATGCGTGCCGCGGTGGTGGCCGGCTTCCGGCTGAGCCCTGA
CTACCCAAAGGTGCCCGGAGGAGCTCGCCTCACGGCCTTGGCAGGCATTG
GCGGCTGGTCGGCGCCGGAGATGGCGAGGTTGCGAGGGCGGATCAATGAC
CTGGGCCTGGTGACTCTCATGGACACTATGGACAGGCTGGAGGAGGCCGT
GACCGCGCTGGACTCGGAGGGGGACTCAGTGGCAGCGGCTGCTGGCTGCT
GAGTGCCCGGAGGAGCTCGCCTCACGGCCTTGGCAGGCATTGGCGGCTGG
TCGGCGCCGGAGATGGCGAGGTTGCGAGGGCGGATCAATGACCTGGGCCT
GGTGACTCTCATGGACACTATGGACAGGCTGGAGGAGGCCGTGACCGCGC
TGGACTCGGAGGGGGACTCAGTGGCAGCGGCTGCTGGCTGCTGA back to top
|