mRNA_S-ischiensis_contig10.1272.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1272.1
Unique NamemRNA_S-ischiensis_contig10.1272.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:482482..483117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1272.1prot_S-ischiensis_contig10.1272.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 482541..483068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.5291393-UTR-S-ischiensis_contig10:482481..4825401622815501.5291393-UTR-S-ischiensis_contig10:482481..482540Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 482482..482540 +
1695739737.034109-UTR-S-ischiensis_contig10:482481..4825401695739737.034109-UTR-S-ischiensis_contig10:482481..482540Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 482482..482540 +
1622815501.5524256-UTR-S-ischiensis_contig10:483068..4831171622815501.5524256-UTR-S-ischiensis_contig10:483068..483117Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 483069..483117 +
1695739737.0545924-UTR-S-ischiensis_contig10:483068..4831171695739737.0545924-UTR-S-ischiensis_contig10:483068..483117Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 483069..483117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.540803-CDS-S-ischiensis_contig10:482540..4830681622815501.540803-CDS-S-ischiensis_contig10:482540..483068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 482541..483068 +
1695739737.0437925-CDS-S-ischiensis_contig10:482540..4830681695739737.0437925-CDS-S-ischiensis_contig10:482540..483068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 482541..483068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1272.1

>prot_S-ischiensis_contig10.1272.1 ID=prot_S-ischiensis_contig10.1272.1|Name=mRNA_S-ischiensis_contig10.1272.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MERPRLFASHSPAAGLMPAGQHALLDKKQHGRLRAENCRNGEGERYVPCG
RCPELCGFSAKKAPVHIHLGGTCATLARPTAAKGNEGKGQQPETFSAIWA
FECSKKSNRKVQPVEDGPAGSPVEDNELVLGCKTKSRQPLYTPKSRPGLV
WAGIATRPGMSGRDSNRSKPPAPRT*
back to top

mRNA from alignment at S-ischiensis_contig10:482482..483117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1272.1 ID=mRNA_S-ischiensis_contig10.1272.1|Name=mRNA_S-ischiensis_contig10.1272.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig10:482482..483117+ (Schizocladia ischiensis KU_0333)
GGGGGAGGCAGCACACATGTCATGGCGGGCTGGGGGGGCAAGCTGTCAAC
GAGTGCTACATGGAGCGGCCGCGGCTGTTTGCCAGCCACTCCCCAGCAGC
AGGTCTTATGCCGGCAGGTCAGCACGCCCTGCTCGACAAGAAGCAACATG
GGAGGCTCCGAGCTGAAAACTGTAGAAATGGGGAGGGTGAACGATACGTT
CCGTGCGGACGATGTCCTGAGTTGTGCGGGTTCTCCGCAAAAAAAGCACC
TGTTCACATACACTTGGGGGGAACATGTGCCACCCTTGCCCGCCCAACAG
CAGCAAAAGGGAACGAGGGTAAAGGTCAACAGCCAGAAACCTTTTCGGCC
ATTTGGGCCTTCGAATGCTCTAAAAAATCAAATCGGAAAGTCCAACCGGT
TGAGGACGGGCCTGCTGGTTCACCAGTAGAGGACAATGAGTTGGTGTTGG
GTTGCAAAACGAAATCACGACAGCCGTTGTACACGCCCAAGAGTAGGCCT
GGCCTGGTGTGGGCGGGTATAGCAACGAGGCCCGGCATGTCAGGTCGAGA
CTCCAACCGGTCGAAGCCCCCTGCCCCACGCACTTGAGCCTCTTGAGTCT
CACAGGAGGAACAAACACACATACCTCTAGGGGACA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:482482..483117+

>mRNA_S-ischiensis_contig10.1272.1 ID=mRNA_S-ischiensis_contig10.1272.1|Name=mRNA_S-ischiensis_contig10.1272.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig10:482482..483117+ (Schizocladia ischiensis KU_0333)
ATGGAGCGGCCGCGGCTGTTTGCCAGCCACTCCCCAGCAGCAGGTCTTAT
GCCGGCAGGTCAGCACGCCCTGCTCGACAAGAAGCAACATGGGAGGCTCC
GAGCTGAAAACTGTAGAAATGGGGAGGGTGAACGATACGTTCCGTGCGGA
CGATGTCCTGAGTTGTGCGGGTTCTCCGCAAAAAAAGCACCTGTTCACAT
ACACTTGGGGGGAACATGTGCCACCCTTGCCCGCCCAACAGCAGCAAAAG
GGAACGAGGGTAAAGGTCAACAGCCAGAAACCTTTTCGGCCATTTGGGCC
TTCGAATGCTCTAAAAAATCAAATCGGAAAGTCCAACCGGTTGAGGACGG
GCCTGCTGGTTCACCAGTAGAGGACAATGAGTTGGTGTTGGGTTGCAAAA
CGAAATCACGACAGCCGTTGTACACGCCCAAGAGTAGGCCTGGCCTGGTG
TGGGCGGGTATAGCAACGAGGCCCGGCATGTCAGGTCGAGACTCCAACCG
GTCGAAGCCCCCTGCCCCACGCACTTGAATGGAGCGGCCGCGGCTGTTTG
CCAGCCACTCCCCAGCAGCAGGTCTTATGCCGGCAGGTCAGCACGCCCTG
CTCGACAAGAAGCAACATGGGAGGCTCCGAGCTGAAAACTGTAGAAATGG
GGAGGGTGAACGATACGTTCCGTGCGGACGATGTCCTGAGTTGTGCGGGT
TCTCCGCAAAAAAAGCACCTGTTCACATACACTTGGGGGGAACATGTGCC
ACCCTTGCCCGCCCAACAGCAGCAAAAGGGAACGAGGGTAAAGGTCAACA
GCCAGAAACCTTTTCGGCCATTTGGGCCTTCGAATGCTCTAAAAAATCAA
ATCGGAAAGTCCAACCGGTTGAGGACGGGCCTGCTGGTTCACCAGTAGAG
GACAATGAGTTGGTGTTGGGTTGCAAAACGAAATCACGACAGCCGTTGTA
CACGCCCAAGAGTAGGCCTGGCCTGGTGTGGGCGGGTATAGCAACGAGGC
CCGGCATGTCAGGTCGAGACTCCAACCGGTCGAAGCCCCCTGCCCCACGC
ACTTGA
back to top