mRNA_S-ischiensis_contig10.1267.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1267.1
Unique NamemRNA_S-ischiensis_contig10.1267.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: D7G6I9_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I9_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 5.440e-88
Identity = 157/226 (69.47%), Postives = 186/226 (82.30%), Query Frame = 3 
Query:   24 MEELRREAHQLEANLEEKTQAYARLAQRINADILYDAENPLDDS-EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSR--QGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWW 692
            ME LRREAH+LEA+LE KTQ+Y+RLAQR+N+DILYDAE+P+D + EQ +A EID LL AL +CNERMGA VAKG RKADSAMLQRYREILFDFSTEFKKTSAA+QR R++ ELFKSSR  +GG           G  + +HLLRE+ AI++SLQSATGVLGQAAEARESLR QR+TL AAS TLSSMQ+RFPAINR VE+I KKK +D+L++A V+A CI FT W+
Sbjct:    1 MEALRREAHRLEADLEVKTQSYSRLAQRVNSDILYDAEDPVDSTQEQLLAGEIDELLSALGDCNERMGAKVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRDTTELFKSSRADRGGGDGT-------GDFEQEHLLREQNAIHNSLQSATGVLGQAAEARESLRHQRATLGAASSTLSSMQNRFPAINRVVEAIQKKKAKDRLIIAAVMAACIFFTFWY 219
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A6S9HNZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HNZ6_HETAK)

HSP 1 Score: 213 bits (541), Expect = 7.300e-63
Identity = 128/226 (56.64%), Postives = 165/226 (73.01%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAYARLAQRINADILY-DAENP--LDD-SEQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWW 692
            E LRREA +LE++LE+K Q+Y+RLAQR+N DILY D E+   LD+  EQ +A +I+HLL AL +CNE+M ACV  G R A+SA+LQRYREILFD++TEFK TS AIQR RES ELF+S+R GGXXXXXX          +HLLRER AI  +++++  V+GQA   R+ LR Q +TL   SGTL+ + S  P+I R VE+I KKK RD +++  VIAL ICFTLW+
Sbjct:    7 ESLRREARRLESSLEDKIQSYSRLAQRLNTDILYQDVESSPSLDNHEEQSLAVDIEHLLSALSDCNEKMNACVTAGSRTANSALLQRYREILFDYTTEFKNTSVAIQRKRESQELFRSARHGGXXXXXXAARDPA---MEHLLRERNAIGGAMRASNSVIGQAFATRDELRAQGATLQGTSGTLAGITSNLPSIGRVVEAIQKKKYRDNMIVGGVIALLICFTLWY 229
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A7S2CM06_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CM06_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.260e-53
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAYARLAQRINADILYDAENPLDDS--EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWW 692
            E LRR+A ++E  LEEK   Y+RLAQR ++D+LYD ENPL +   EQ +A EI++LL  L ECNERM  CV+   R A +A+LQRYREI FD+  +F +T+ AI R RE  +LF+     G                +HL RE  AINSSL+SA+ V+GQA E R +L  QR+TL  A GTL  + S +P+I R + SI +++ RD +V+  VI++CICFTLWW
Sbjct:   14 ESLRRQAKKIEGLLEEKVSGYSRLAQRNHSDMLYDEENPLMEGHEEQALAIEIENLLSGLSECNERMSQCVSTVPRTASAALLQRYREIYFDYKRDFDETACAILRTREQVQLFR-----GTQVQRNKGTERDDTGMNHLYREEEAINSSLRSASNVIGQADEVRGALWSQRNTLTLAGGTLGQLSSAYPSIGRVIVSIQQRRYRDNMVVGLVISVCICFTLWW 232
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A7R9Y9Q6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Q6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.610e-50
Identity = 105/235 (44.68%), Postives = 151/235 (64.26%), Query Frame = 3 
Query:    6 RSSLGRMEELRREAHQLEANLEEKTQAYARLAQRINA--DILYD-AENPL---DDSEQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWW 692
            R S+   + LR EA +LE  LE+K QAY+RLAQR +A  D+L+D  E+P+   +D E+ +A  I+ LLG L ECNERM A V+ G R A +A+L+RYREILFD+  EF+K SA IQR +E A+L      GG           G     HL  E+ +INSS+ +A G L QA  AR+SL  QR  L  +SGT++S+ ++FP +N+ +ESI +++ R+ +V+   I+ C+CFT+W+
Sbjct:   57 RGSMAEWDRLRAEARKLEMQLEDKVQAYSRLAQRFSARSDLLFDDVESPMLGAEDEEESLAGAIEKLLGDLGECNERMSASVSSGSRAASAALLKRYREILFDYKNEFRKLSATIQRKKERADLL-----GGVGARNGNANAAGNSGMQHLYAEQRSINSSIHTAGGALEQANAARDSLGRQRELLTGSSGTMTSIAAQFPMVNQVIESIRRRRTRENVVMGLAISACVCFTIWY 286
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A7S1XU31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU31_9STRA)

HSP 1 Score: 169 bits (427), Expect = 5.360e-46
Identity = 100/229 (43.67%), Postives = 147/229 (64.19%), Query Frame = 3 
Query:   33 LRREAHQLEANLEEKTQAYARLAQRINA--DILY--DAENPLDDSEQE--VAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTLL 701
            LR EA +LE  LE+K QAY+RLAQR +A  D L+  D E+P+  +E+E  +AR I+ LL  L +CNERM   V  G R A +A+L+RYREILFD+ +EF+K S+ I + +E A+L     +GG             +   HL  E+ +INSS+ +A   L QA+ AR+SLR QR  L+ A GTL  + S+FPA+N+ +ESI +++ R+ +V+   I+ C+CFT+W+ +L
Sbjct:    7 LRGEARKLEMQLEDKVQAYSRLAQRFSARQDSLFGDDVESPMLGTEEEEVMARGIEKLLTDLADCNERMSQVVTSGSRAASAALLKRYREILFDYKSEFRKLSSTIAKKKERADLLSGGGRGGGIGAGGDGGDG--VGMRHLYAEQNSINSSMHTAGQTLDQASGARDSLRRQREMLSGAGGTLQDLASQFPAVNQIIESIRRRRTRENVVMGLAISSCVCFTIWYLVL 233
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A836CCE5_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.380e-42
Identity = 105/233 (45.06%), Postives = 140/233 (60.09%), Query Frame = 3 
Query:   33 LRREAHQLEANLEEKTQAYARLAQRINAD---------ILYDAENPLDD-SEQEVAREIDHLLGALQECNERMGACVAKGGRKA-DSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTL 698
            + REA ++E NL+ K Q+Y  L++R+ A            YD ENP D+ +E  +AREIDHLL  L E  + M A  A G R       ++RYR  L D   E+ + S+AIQR+R++ ELF+  RQ                D DHLLRE   I SSL+ A+ VLGQA EARESLR QR TL+  + TL ++ S FP I R V+ IG+++ RD +++ATV+ALCICFTLWW L
Sbjct:    8 INREALRIEGNLKAKVQSYWDLSKRLEATDGATRNGVASSYDLENPADNMAEAGLAREIDHLLSQLTEMLDAMAA--APGLRTIPQQEQMKRYRVNLIDSRAEYNRASSAIQRHRDANELFRG-RQA-----RRHKAEGADADTDHLLRESQYIGSSLRGASNVLGQAHEARESLRQQRETLSRTNATLGALTSAFPGIGRIVDQIGRRRTRDNMIVATVLALCICFTLWWLL 232
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A8K1CRR2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRR2_PYTOL)

HSP 1 Score: 142 bits (359), Expect = 3.530e-36
Identity = 88/230 (38.26%), Postives = 132/230 (57.39%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAYARLAQRINADIL-YDAENPLDDS--EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTLLSR 707
            +ELRR+A   E  LEEK  AY  + + +      +D ENP  +   E++++ EI++ L AL +  + M A V     K   A+LQRYRE+ FDF TEF++T +++Q  RES  LF + ++G               + D LL ER A++SS      ++ QA E + SL  QRS   ++ G  +++ + F  IN  +E I +KKMR+  +LA VIA C+CFTLWWT+LS+
Sbjct:    7 DELRRKARAAEHTLEEKIAAYVAINREVKRSTTQFDEENPPTEGTDEKQLSLEIENALMALSDAIDEMNAHVNTSASKTQEAVLQRYRELYFDFKTEFQRTMSSLQEKRESQRLFGNRQKGTTEDN----------ETDALLNERRAVDSSRLMTNSIIEQALETKNSLENQRSRFMSSRGKANTIANSFTGINSLMEQIRRKKMRNNTILALVIAGCVCFTLWWTILSK 226
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: M4BFT0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFT0_HYAAE)

HSP 1 Score: 142 bits (358), Expect = 5.640e-36
Identity = 87/231 (37.66%), Postives = 133/231 (57.58%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAY--ARLAQRINADILYDAENPLDDS--EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTLLSR 707
            EELR  A   E  LE+K  AY  A  AQ     ++YD ENP++++  E+E+A  I++ L +L +  + M A V     K   A+LQRYRE+ FDF+TEF+++ + +Q  R++ +LF +    G             I+ D LL ER A++SS    + ++ QA   R +L  QR    ++ G ++++ S F  IN  VE I +KKMR+  +LA V+A C+CFTLWW +LS+
Sbjct:   10 EELRSCARAAERTLEDKIAAYKVASRAQSRGVAVVYDEENPIEETADERELAVAIENALASLSDTIDEMNAVVNTTSLKVQDAVLQRYRELYFDFNTEFRRSMSTLQEKRDAQKLFGNRSHNGHSDD---------IEMDSLLNERRAVDSSRSMTSSIIEQAMATRNALANQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVVAACVCFTLWWVVLSK 231
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: A0A5D6XLV6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLV6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 9.500e-36
Identity = 92/232 (39.66%), Postives = 130/232 (56.03%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAY---ARLAQRINADILYDAENPLDDS--EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTLLSR 707
            EELRR A   E +LE+K  AY   +R A R+  D  YD ENP  DS  EQE+A +I++ L  L +  + M A V+    K   A LQRYRE+ FDF TEF+++ + +Q  R+S +LF + R  G              + D LL ER A++SS   A  ++ QA E + SL  QR+    +   + S+   F  IN  V  I +KKMR+  +LA V+A C+CFT+WW +LS+
Sbjct:   18 EELRRAARTAERHLEDKIAAYTAISRSAPRVAGD--YDVENPPADSTGEQELALDIENTLTTLSDTIDEMSAFVSTSSLKTHEAQLQRYRELYFDFKTEFRRSMSTLQEKRDSQKLFGARRTTGASDDK---------EMDSLLNERRALDSSRSMANSIIEQALETKNSLDSQRARFMGSHSKVHSVSHSFAGINAIVAQIRRKKMRNNTILALVVAGCVCFTVWWVVLSK 238
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BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Match: W2K0X8_PHYPR (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2K0X8_PHYPR)

HSP 1 Score: 141 bits (355), Expect = 1.530e-35
Identity = 88/231 (38.10%), Postives = 133/231 (57.58%), Query Frame = 3 
Query:   27 EELRREAHQLEANLEEKTQAYARL--AQRINADILYDAENPLDDS--EQEVAREIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTSAAIQRNRESAELFKSSRQGGXXXXXXXXXXXGPIDADHLLRERIAINSSLQSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGKKKMRDKLVLATVIALCICFTLWWTLLSR 707
            EELR  A   E  LE+K  AY  +  AQ  ++  +YD ENP +++  E+E+A +I++ L +L +  + M   V K   K   AMLQRYRE+ FDF+TEF+++ +A+Q  R+  +LF +    G              + D LL ER A++SS    + ++ QA   + +L  QR    ++ G ++++ S F  IN  VE I +KKMR+  +LA VIA CICFTLWW +LS+
Sbjct:   10 EELRSSARAAEHTLEDKIAAYTAVSRAQTRSSSAVYDEENPPEETADERELAVDIENALASLSDTIDEMNVVVNKTSVKTQDAMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLFGNRAHTGHSDDA---------EMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLWWVVLSK 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6I9_ECTSI5.440e-8869.47Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6S9HNZ6_HETAK7.300e-6356.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CM06_9STRA1.260e-5348.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9Y9Q6_9STRA7.610e-5044.68Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XU31_9STRA5.360e-4643.67Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A836CCE5_9STRA3.380e-4245.06Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A8K1CRR2_PYTOL3.530e-3638.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BFT0_HYAAE5.640e-3637.66Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5D6XLV6_9STRA9.500e-3639.66Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W2K0X8_PHYPR1.530e-3538.10Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:462659..470107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue9.7e-73
Seed eggNOG ortholog2880.D7G6I9
Preferred nameGOSR1
KEGG koko:K08495
KEGG Pathwayko04130,map04130
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001101,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032879,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048209,GO:0048284,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097305,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1901700
EggNOG free text desc.regulation of vesicle targeting, to, from or within Golgi
EggNOG OGsKOG3208@1,KOG3208@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-05_006350.1
Exons6
Model size1399
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1267.1prot_S-ischiensis_contig10.1267.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 462682..469418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.7743819-UTR-S-ischiensis_contig10:462658..4626811622815511.7743819-UTR-S-ischiensis_contig10:462658..462681Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 462659..462681 +
1695739741.9580047-UTR-S-ischiensis_contig10:462658..4626811695739741.9580047-UTR-S-ischiensis_contig10:462658..462681Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 462659..462681 +
1622815511.884819-UTR-S-ischiensis_contig10:469418..4701071622815511.884819-UTR-S-ischiensis_contig10:469418..470107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 469419..470107 +
1695739742.0243893-UTR-S-ischiensis_contig10:469418..4701071695739742.0243893-UTR-S-ischiensis_contig10:469418..470107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 469419..470107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.7883923-CDS-S-ischiensis_contig10:462681..4627291622815511.7883923-CDS-S-ischiensis_contig10:462681..462729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 462682..462729 +
1695739741.9734418-CDS-S-ischiensis_contig10:462681..4627291695739741.9734418-CDS-S-ischiensis_contig10:462681..462729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 462682..462729 +
1622815511.8104346-CDS-S-ischiensis_contig10:463427..4634911622815511.8104346-CDS-S-ischiensis_contig10:463427..463491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 463428..463491 +
1695739741.9811425-CDS-S-ischiensis_contig10:463427..4634911695739741.9811425-CDS-S-ischiensis_contig10:463427..463491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 463428..463491 +
1622815511.8291764-CDS-S-ischiensis_contig10:465835..4658971622815511.8291764-CDS-S-ischiensis_contig10:465835..465897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 465836..465897 +
1695739741.9889708-CDS-S-ischiensis_contig10:465835..4658971695739741.9889708-CDS-S-ischiensis_contig10:465835..465897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 465836..465897 +
1622815511.8397963-CDS-S-ischiensis_contig10:467281..4675121622815511.8397963-CDS-S-ischiensis_contig10:467281..467512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 467282..467512 +
1695739741.996661-CDS-S-ischiensis_contig10:467281..4675121695739741.996661-CDS-S-ischiensis_contig10:467281..467512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 467282..467512 +
1622815511.8536398-CDS-S-ischiensis_contig10:468676..4687441622815511.8536398-CDS-S-ischiensis_contig10:468676..468744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 468677..468744 +
1695739742.005973-CDS-S-ischiensis_contig10:468676..4687441695739742.005973-CDS-S-ischiensis_contig10:468676..468744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 468677..468744 +
1622815511.8663719-CDS-S-ischiensis_contig10:469204..4694181622815511.8663719-CDS-S-ischiensis_contig10:469204..469418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 469205..469418 +
1695739742.0154955-CDS-S-ischiensis_contig10:469204..4694181695739742.0154955-CDS-S-ischiensis_contig10:469204..469418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 469205..469418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1267.1

>prot_S-ischiensis_contig10.1267.1 ID=prot_S-ischiensis_contig10.1267.1|Name=mRNA_S-ischiensis_contig10.1267.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=229bp
MEELRREAHQLEANLEEKTQAYARLAQRINADILYDAENPLDDSEQEVAR
EIDHLLGALQECNERMGACVAKGGRKADSAMLQRYREILFDFSTEFKKTS
AAIQRNRESAELFKSSRQGGGGNGHGDGDGGGPIDADHLLRERIAINSSL
QSATGVLGQAAEARESLRLQRSTLAAASGTLSSMQSRFPAINRAVESIGK
KKMRDKLVLATVIALCICFTLWWTLLSR*
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mRNA from alignment at S-ischiensis_contig10:462659..470107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1267.1 ID=mRNA_S-ischiensis_contig10.1267.1|Name=mRNA_S-ischiensis_contig10.1267.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7449bp|location=Sequence derived from alignment at S-ischiensis_contig10:462659..470107+ (Schizocladia ischiensis KU_0333)
GCGAGAGAAGCAGCTTGGGGAGGATGGAGGAGCTGCGGCGTGAGGCTCAT
CAGCTGGAGGCTAACCTTGAGGTGAGTCTCTCTAGGTGCCCGTGTAACAC
GAGTGGATGCCCATGGTGAGAAACGAGGTAAAGAGCTGGCCTGTTCGCCC
GAGTTGCCACCTATATATCAAAGTTGGCACAACGCTGACTGCCGGCCATG
TCTCGTTTACTGGGGCTGGGGACGCTGCAGCTTGGGGCTGCAGAACATTT
GTAAAACATCGGTGCGGGCCACAGGTAGACCCGCACTGAAGAGAGCAGGG
CTCCTTCTTTGCCAAAAGGCGGCAGAACACAGGGCCTTGGCCTCAGGCCG
GAATTTGGACGAGTGGATGACAGTGGCACGGGAAGCACGGCACGCGTTGC
TCAATGCTATAGCACCGCCCTGGCGACACCAGGGTTCTTGTCCTGGTAAG
TATGCTCAGCCCGCAGCTCTTTAAGCTGAATTTGCCGTGCTTCGGGCAGC
AGCTCCGGGCGCGTGCTGGCAGCACCGGGCACCTGTGTGCGGTCTGGTCT
ACCTTACGCCCCCATGCCAAAAGGCTTTTTTCTGCACCAAGGAGCAGTGA
CATGCTGGGGTGCGCTTGTAGCAATAACAGGTGTCGCCAAGTGCTTGGAA
CTGGCATGCAACCCGTGACCCCGCTCATCGTGCAACAGGGACCAATCCCA
AGCATAGCAGATCTCGCAGCGTGTCATGACAGTCTCCGCTGCTGCGCGTG
CATGTGTCTGTCCTCGCAGGAGAAGACACAAGCCTACGCCCGGCTGGCAC
AGCGGATCAATGCAGATATTCTATACGATGCAGGTGCGCCAGATGCAAAT
ATATATACTCGAGTATATATATATAATACATTAGGGGAGGGGGGGTTTGG
GGCGTTCGACCAGCACTATGCAACTTTTTGCACAGGGGAGGTTGGAACCC
TACCGATGTGGGCTTTGGGCTGACGGAATGCCTGCATCGGAAAGGCGTCT
TGGCTTTTGGGACCTATTGTTGGGCATTTGCACGCTGCATTGTACTCGCG
GTTCTTCGGACGTGCAGAGCTCAGGGGGAACAATTCCGAGGAACGCCCTG
TTTGATTGTCTTGTTGGTTTGGATTTTCTACGCCATCTCTGCGGGGCATG
CTTGGCAGTTGCAAGAATGTAGCTGCAGGGGTTGCTCCGCCCCTGACTAC
AACCCGTGCACTGAAGGCCTTTGCAAGTGTTTTCTTTCGTTGGTGGCCCG
ACCGGTTCGGTTGAATCGTTTTCTCGAGGGATTCTCGGGGCCGACCAGTT
GGTGCTGGTTTTTCGAAGCGGGGTGAACACTATCAGCTACATGGAATTGT
ATCGGTCCGTAGTCATTCGCGTTGAACGGCTATTCGGGCACACGGAAAGC
ACCGGCCATCTCCAAGGGCGAATAAAAACACACCAATTTATTCAAGATAC
TACTTCGAAGCATGTACCTACGCCGATATACTGGGATTGCGACCGATGGA
ATGTTTCGGCGTTCGGTTCATAACCGACGCCCAACAGCTCTCACCCGAGT
CGGTGCACAGCTCCATCCCTGACAGAAGCCGTGGCCCATGTTCCGTGGGC
TACGTACAGCAGCCGGCCCAACGCGAGTCACGATTTTACTTTGCGCTTCG
GGTCTTCCATGCAGAAGACTTAGTGCCCGGTGCTTCAAAGAATTAGTACC
CGGTATGTCAAAGAGTTAATACCCTGTACTTCAAATAGTTCATACCCGGT
GCTTCGAAGAGTAAATACCCTGTACTTGAAAGAGTTTTTACCCTGTACTT
CAAAAAGTTAATACCTGGTACTTCAAAGAGTTAATCTACTTGAAAGGGGT
AATGCCCGGGGTGCTTCAAAGAGTTTTTACCCTGTGCTTCAAGAGTTATT
TCCCTGTACTTCAAAGAGTTAATACCCGGTACTTCAAGGAGTTAATACCC
AGTACTTCAAACAGTTAATACCCGGTGCTTCGAAGAGCTAATACCCGGTA
CTTCAAACACTGTACCTTCAAATGACAGCCCCATGTGTGCGCTGTGTAGT
ACTCGAGTGCAAATTTTCTCTGTGCCTTGTTGGTACTCATGTACAAGTAT
GCACTTGTCAAAGCACGGTGTCTGGTGTGTGTGCGTGCCACCGAATTTTG
ACCGAGCAGGAGTTGAGTGCAGTCCAGTACCCGGCAAGCTCACCTGGCAT
GCTCCCGTCCCGGCCTCGTTGGGACGCGAGAGTCAATGGCGAAATAGCTA
CTCTCTCTCTGGTGCAGGAGGAGGGCAAACCCGGAGTTTAACTTTTTGGG
GCTGTTTGTTCACCATGTACTCAAGTACAAACTTGCATGTCGGAAGGCGA
GTCAATGAGTGCATGTGCTGTATATGTACGTATACAGTCACAAGTATGTA
TACTACTGTACTGTATGTACTTCGAAGTCTGAACTGTACCACGGTACAGT
ACACTCCTACATATACCTCTCGTTGTGCTTGCCATGATTTAATCCTGAGA
CCGTTGACGGCGCACCTCAACCGAAATGCAGCGGGTCCCCTCCCGCCCCC
TGACAGAGCCAGGGTGGGCGGGGGAGACTCCTAGTTTGAAGTTCTTTGAA
GTATGTGTGCTGCGTTCTTGGAAGTCGTCTATAAAAAGTCGCGTGCCAGG
TTTGGGGAAGGGGATGGCTCCGCTCTCGGAAGAGTTGATAGGTCAATGGT
CTCTGGATTGAGGCAAGCACGGCGTGAGTACTTGTATGCGAATGTTTCCA
CGACCTCAACCTTACTTGCATGTGCAGTGCCTGTGTACCGTGCATCCCGT
CCCGGCATAGTGGGGATGCGAGGCCAGTGGCTGAAAGGATAGCCTTCGGG
GGCTGGTCGTTTGTCCAGCAAGGATGTACTCGTACTTCTAAGTACGGCGC
TGGGCCAATGGTCGGTGGCTTGCACAGGACACAGGGGTGACCGTGCCCGA
AATGAATGCTCGTATACACAGCCCTACTGTACTCGTAGTTGCAGTACAGT
ACCGTACAGTACAGTACGGTACAGTACAGTACGATGCATCACAGTCGTAG
AGCTACTTGGGCGTGTGCACCAACTACGTACTTCCAAGGCATGAATGTGA
ATGCTTGCCTTCCGAACGCCGACTCAGCGGCTGCCACGCGTCCCCCCCCG
GGGCCGCCGCCGCCTCCCCCGGGGCAGAGAACCCCCTGGACGACTCGGAG
CAGGAGGTGGCACGAGAGATTGACCACCTGCTTGGGGCGGTGAGTGCGTG
ACAAACGGACGGACGGACGGACACGCGCCGCGCGTGTGTTGGCGTTCGGC
CCGGTCGTATGCCGGTACAATGTGTGTGTACTTCGAAGTATGTTTTTTTT
TGTGTGTGTGTGTGTGCTTGGAACTACAATGACTAGGGCTGTGAACTGGC
ACGGCCGACCAGTTTAACTGTGAACCGGTCTTGTGACCGGTCGGTTTCTC
AACCGGTTACCGGTTGTGGCTAAAGTATTGCCAATATCAACGAATAGAGT
TCGAGTCACCCGCTCCGGCCACACGATCGGCCACCGGTTGGTTGACCGGT
TGGTCAAGTCAACTGGTACCGACCGGTAAAACACGGCACCATTTCACAAC
CCTAGTAGGGGCAGCTACTTGCTTGTGTCTTGCTTGAAACTGTCGTGCTC
GAGACCCCCCAAAACGCGTGTGCGCGCGACCGGAGCGTGCTTGCATGGCC
GGCCGACAAGCCCGCAGAGTTGCTTGCTTGCTTTCACGCAGCTGCATTGT
TGGGGCCGCTCGACCCCCCGTTGACAGCACCCCGAGGGAAGCTGTACCAA
GGGCCCGTGCAGTGTGTACTCACCTGCGGACGAGGTTTCCCGTCTCTGTG
CATGCCCTGGACCCGAACGATCCTCGCCTTTGCTCCTTCTCGTGGATCGC
TGGCCAGCTGTAGCTTTCGCCATTGCAGTAGAGTACACACTCAAAAACTG
TCACAGCCGCGTCTTCCCGTGTGGCCGCGGCGTGCACGGTAGGCAGCCAC
GCGACTGCCCTCTGCAAATATCAGGAGCAAGTACTGCACTCTATAGAGGG
CAAACATCAGGAGCAAGTACTGCACACTCTCTATATATATGTACTCACGT
GGTGCTGGCCGCAGTCCCGAGACCATTGACCCCGCGCACTCTATAGAGGG
CAAATATCAGGAGCAAGCACTGTGCTCTATAGAGGGCAAATATCAGGAGC
AAATACTGTACTCTACTTGTAAGATCCTGTACACGAGCGCCTGATGAGCC
GCTGACCCCGTGCTTGCTTGCCACGTGGCCTTCTCTGCTCCGCCCCCCCG
GCCGCCCTCAGCCGCATGCGCCCCATTGTGGCCGATTTGAGGCCCGACAC
GATTTGTGGGGGGTGGAGGGTGGAGAATGCGCCTTTGTGTGCCCGGGCCG
AGTGCGTGGGGGCTGCCTACATTGCACCAAGCCTTCCCCCTGCGCGCTAG
AGTAGGTACTGCCGTAGTTGGTGTCTCCAAGCGTTTGACCTCCACTCTGG
CCCCAGTTGTGGCCTTGTTCCGTTGATAGCCGGCCGTCCTCCTGTTTATT
GATAACTTAGCCGCGTCCGACCGCCCCCAACCAACCACGCCGGCCGTGAC
GTCGGCCACCTCACCCCGCGCAGCTGCAGGAATGCAACGAGCGGATGGGG
GCCTGCGTGGCCAAGGGGGGGCGCAAGGCGGACTCTGCCATGCTCCAGCG
GTACCGCGAGATCCTGTTTGACTTCTCCACAGAGTTCAAGAAGACCTCTG
CCGCCATCCAGCGAAACCGGGAGAGCGCGGAGCTCTTCAAGTCCTCCAGG
CAAGGCGGCGGTGGCAATGGCCATGGCGATGGCGATGGCGGCGGCCCCAT
TGATGTTTTAGATTTGTTATGGTTGGCTCCCCGGTTATGATAACTGTTGC
CCGGCCCCTGAGATCCAACGAAGGGATTGCCGTGTCAACAGCGCGGTTCG
ATCCCTGTGTGGTTTGATGTGATGTGATGTGTACTCTAGTGTAGTATTAA
CAGGAACAACACGGTGCAAGGTGCGGGCCACGTCACTAGAGACCTCAGCA
GTGGCCCTTCCTTATACTTGTAGCTCGCCAGGGGAAGTTTGTGTGGGGAA
GGGCAGAAGAGGGGGAGGGGGAGGGTGCACACAGTAGTCTGACATCACGT
GATATATGTCACATCACACCATCACATCACATCACGTCCGTGTTATGTGC
TGTACATAGTTTGACGTCACATGGCACTGTCTCCACTGCCAAGCTAGCAT
AGCCTTTGCGAGCTACTTGGAAGGAAGGGCATTTCTTGAAGTTGCTGTAC
TTGCCTACCACCGTTGCAAACCCTGAGCCGGGAGGATGCGTGCCGCGCTC
GCCGCATTTATCTATTCTCTGCACATCGCTTGTGCCTACGGTAGGCGTGG
AATGTCGCATGGAACAACCGTGTACTCTATGTCGCATGTGTGTGCAGGTA
GTACGCTCCTTCTCACTTCCTTGCCAGTATGTACCACAGAGTACAGTAGT
TGTCCAGTACTGCTATGGAAGCAAGTGACAGTTGCCTACTGTACGACGAA
GTACTTGCACAGTACTCTTGTGAGTAGTGCAGTAGTACTCGAGTACCTAC
TTGAGGACTTTCGGGTGTACTGCGTACTTGACAACTATTTGTTGACGCCG
TGTTCGCCGTAGTCCGGAGACCATTGATTCATCCATCCGTTGTACTGCTA
TACTCGTATATACTCAAGTACTTCAAAGTAGGTTGCTGAAGTTTGGGGGG
CGAGGAGGGTGCTGCAGAATAACGTGTGTGTGTACTCGCGTCTCTGTGCA
TGCCCTGGACCCGCACGATCCTCGCCTTGTTTGCTCCTTCTCGTGGATCG
CTGGCCAGCTGTAGAACAAAGCGTGGGTAAGATACCGCCGATGGACCGGC
ATGCAGCGTCTCATCTTCTTCGTGTGAACTCTACAGTACCCAACCTGACC
CGCGGCGCGCACGGCTGCGTGTTCTCGTCCCCCGCAGGGCGGACGCGGGG
GGTAGTGGCGACCCAGAGGCAGACCACTTGCTGAGGGAACGCATCGCCAT
CAACAGCTCTCTCCAGAGCGCCACGGGGGTGTTGGGGTGAGTCAAGTTAC
TTGTATGCTTGCGTAAGGTGCTTGCTCTTCCTAGGTACGCTGGAAGTGCT
TCAAAGTACCTATGTCCACCTCCCCCTTCCCCACACAACTTCCCCCTGGC
GAGCTAAGGAAGGGCCATTGTTGAGGTCTCTAGGGACGTGGCCCGCACCT
CACCCCGTGTTGTTTCTTAAAGTACTTCAAAGTACCTAGTGTAAGCACCC
CAAGTGCCTACTCGAAGTACGTTGGGCATGGTCCTGACCCTCTCCGGTGT
ATGGGCAATGGTCCGTTGCCCGTTCTGTCGTCCGAGGTGTGACATGCACT
ACTTACTGCAACTACTACGCAGTATGTTGTCGGAGCACTTGGAAGTCTGT
ACAGTCAAACGAAACTGACAACACCTGCGATGCTCCGAGAGAGAACCTCT
GTCAACCTCGGCGCACGCCCCCGACCGCCGCAATCATGGCCTGCAGGCAG
GCGGCAGAGGCAAGGGAGAGCCTGCGATTGCAGCGCTCTACCCTCGCGGC
GGCGTCGGGCACTCTGTCGAGCATGCAGAGCCGCTTCCCCGCAATCAACC
GGGCCGTGGAGTCCATTGGGAAGAAGAAGATGCGGGATAAGCTGGTGTTG
GCCACTGTCATTGCCTTGTGCATCTGCTTCACATTATGGTGGACCTTGTT
AAGCCGATGATGGCGATGGCGGCGATGGCGCGTCGAGGTCGATGATCTGT
TTTGAGTTGTTTGCTGGTTTTCGGTGCCCCGGCCTGCAGTCGTCAGGGCG
ACAGGCGACCCTCACAGTAGGCGCGTGTGCTGTACTTGCAAGTAGAATAC
CCTGTATCATACAGCACAGCAAAGCTCTTTGATTGCTACTCGTACAGGTA
CAGGTACTGTACTGGGAGTACATAGAGTCCGAAGTATGCATGTGTACAGC
ACTGCAGTAGTGGTATCAGGAGGCGTGACTGGCGCACACTGCAGCTGCCG
TGTGTCTCATAGTGCTTGAACGTGCGTAGCTCATGCCCCACACAAGGCCA
TGGCCCGCGGCGATCGTCGTCGCTGCAACAGCCGGGCCCGTTCAGCTGTA
GTGCAAATGTAGCCCGAGCTAAGAGCCACTTGATGCCAGACTGAGTGTCC
CGGGACTCGCTGCAGGATCTGAGTCCACGGTCTCGTGGACACGGCGGCCA
AGACTGACCCACTGGCACGCGGCGACGGCAGCTGCAGCAGAATGTCAGCT
GCATGTGACAGTGTGTACAGTACAGTATGATCAGGAACAACACGGGGCGA
GGTGCGGGCCACATCACTAGAGCACAGTAGTACAGTAGTCAACTCCGTGG
ACGATGGCGTGCCATATCACACACACACAAGGACATGAGTGTTGGGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:462659..470107+

>mRNA_S-ischiensis_contig10.1267.1 ID=mRNA_S-ischiensis_contig10.1267.1|Name=mRNA_S-ischiensis_contig10.1267.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1374bp|location=Sequence derived from alignment at S-ischiensis_contig10:462659..470107+ (Schizocladia ischiensis KU_0333)
ATGGAGGAGCTGCGGCGTGAGGCTCATCAGCTGGAGGCTAACCTTGAGAT
GGAGGAGCTGCGGCGTGAGGCTCATCAGCTGGAGGCTAACCTTGAGGAGA
AGACACAAGCCTACGCCCGGCTGGCACAGCGGATCAATGCAGATATTCTA
TACGATGCAGGAGAAGACACAAGCCTACGCCCGGCTGGCACAGCGGATCA
ATGCAGATATTCTATACGATGCAGAGAACCCCCTGGACGACTCGGAGCAG
GAGGTGGCACGAGAGATTGACCACCTGCTTGGGGCGAGAACCCCCTGGAC
GACTCGGAGCAGGAGGTGGCACGAGAGATTGACCACCTGCTTGGGGCGCT
GCAGGAATGCAACGAGCGGATGGGGGCCTGCGTGGCCAAGGGGGGGCGCA
AGGCGGACTCTGCCATGCTCCAGCGGTACCGCGAGATCCTGTTTGACTTC
TCCACAGAGTTCAAGAAGACCTCTGCCGCCATCCAGCGAAACCGGGAGAG
CGCGGAGCTCTTCAAGTCCTCCAGGCAAGGCGGCGGTGGCAATGGCCATG
GCGATGGCGATGGCGGCGGCCCCATTGATCTGCAGGAATGCAACGAGCGG
ATGGGGGCCTGCGTGGCCAAGGGGGGGCGCAAGGCGGACTCTGCCATGCT
CCAGCGGTACCGCGAGATCCTGTTTGACTTCTCCACAGAGTTCAAGAAGA
CCTCTGCCGCCATCCAGCGAAACCGGGAGAGCGCGGAGCTCTTCAAGTCC
TCCAGGCAAGGCGGCGGTGGCAATGGCCATGGCGATGGCGATGGCGGCGG
CCCCATTGATGCAGACCACTTGCTGAGGGAACGCATCGCCATCAACAGCT
CTCTCCAGAGCGCCACGGGGGTGTTGGGGCAGACCACTTGCTGAGGGAAC
GCATCGCCATCAACAGCTCTCTCCAGAGCGCCACGGGGGTGTTGGGGCAG
GCGGCAGAGGCAAGGGAGAGCCTGCGATTGCAGCGCTCTACCCTCGCGGC
GGCGTCGGGCACTCTGTCGAGCATGCAGAGCCGCTTCCCCGCAATCAACC
GGGCCGTGGAGTCCATTGGGAAGAAGAAGATGCGGGATAAGCTGGTGTTG
GCCACTGTCATTGCCTTGTGCATCTGCTTCACATTATGGTGGACCTTGTT
AAGCCGATGAGCAGGCGGCAGAGGCAAGGGAGAGCCTGCGATTGCAGCGC
TCTACCCTCGCGGCGGCGTCGGGCACTCTGTCGAGCATGCAGAGCCGCTT
CCCCGCAATCAACCGGGCCGTGGAGTCCATTGGGAAGAAGAAGATGCGGG
ATAAGCTGGTGTTGGCCACTGTCATTGCCTTGTGCATCTGCTTCACATTA
TGGTGGACCTTGTTAAGCCGATGA
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