mRNA_S-ischiensis_contig10.1224.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1224.1
Unique NamemRNA_S-ischiensis_contig10.1224.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:26412..27493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.2366984-CDS-S-ischiensis_contig10:26412..268341622815492.2366984-CDS-S-ischiensis_contig10:26412..26834Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 26413..26834 -
1695739732.867497-CDS-S-ischiensis_contig10:26412..268341695739732.867497-CDS-S-ischiensis_contig10:26412..26834Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 26413..26834 -
1622815492.2506776-CDS-S-ischiensis_contig10:27453..274931622815492.2506776-CDS-S-ischiensis_contig10:27453..27493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 27454..27493 -
1695739732.9129953-CDS-S-ischiensis_contig10:27453..274931695739732.9129953-CDS-S-ischiensis_contig10:27453..27493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 27454..27493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1224.1prot_S-ischiensis_contig10.1224.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 26413..27493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1224.1

>prot_S-ischiensis_contig10.1224.1 ID=prot_S-ischiensis_contig10.1224.1|Name=mRNA_S-ischiensis_contig10.1224.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=154bp
GDHEQWVAFSREAGPAPPPGHWHRPPSIPAAGQPRRQPRHCRRRRRSRYH
HTNTFARGRPRGLAPRPPVTTAPTMLYRWRGGSVQAATASQAVGVEGVTA
TGTPARAARRLRVAVGLPCGPPGGPCPPKHANCHWWSSPGATPVPWAGQV
TPLR
back to top

mRNA from alignment at S-ischiensis_contig10:26412..27493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1224.1 ID=mRNA_S-ischiensis_contig10.1224.1|Name=mRNA_S-ischiensis_contig10.1224.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1082bp|location=Sequence derived from alignment at S-ischiensis_contig10:26412..27493- (Schizocladia ischiensis KU_0333)
GGGGACCATGAGCAGTGGGTGGCATTTTCCCGGGAAGCAGGTGGGCTGGA
AATCCCCTCGTGGGATGTGAACTGCGCTGTACAGTCCCACATGCATGTAC
TGTACGGTGCCATGTACTGTACTACGTGCTTCCAAGTGCTTGATGGGTTG
CCGCCTGCCATGGTGAAAGGGAAGGTGAAAGAGGGACTGCACTACAGTAT
CGTACACGTCGCAAGAGAAGCACTGTGTGACAGCCATGGTAATCAAGAGC
CACTGCCGAACTACGGGGGGCAGCCCAAGGAGTTGGCAGCCAGCACGGCG
GAGCTCAACTGCCACTCATGTGTAGAGTACTTCAAAGTAGTACCGTACAG
TACTGTACTCGAGCAGTACCCTAGTTCCCTACTTCGTAGCGCATACCAAC
TGCCGTATATATATACGTACGAGTACATGGTAGGTCTATTTTCTCATTCG
GTATCTTGGTGCCAGCTGTGCCCACCTGGCCAACCGCCAACGTCCCAGCT
CGCAAAAAACAAATTACGGGAGTCCGCTGCGAATGAGCCTCTGGGTCGCT
GCGGCCACCACACCCACCTCGAAAAAGAAACCTCACACAAATGCCTTCCC
CTGAACTCGTCCCCGACAACAACGCCGCGGCCGGGCCGCCTGTCCTCGAC
CAACCTCAGGCCCAGCCCCGCCCCCTGGCCACTGGCACCGACCACCCTCC
ATCCCCGCGGCTGGGCAACCGCGACGCCAGCCCCGCCACTGCCGCCGCCG
CCGCCGGAGCCGCTACCACCACACCAACACCTTCGCTCGAGGAAGGCCCC
GGGGGCTCGCCCCACGGCCACCAGTCACCACGGCACCAACAATGCTTTAT
CGGTGGCGGGGAGGAAGCGTCCAAGCAGCCACTGCCTCTCAGGCTGTCGG
AGTCGAGGGGGTCACCGCCACTGGCACGCCCGCCCGGGCCGCCCGACGCC
TCCGCGTCGCTGTCGGGCTCCCATGCGGCCCACCCGGAGGCCCCTGCCCC
CCCAAACACGCAAACTGTCACTGGTGGAGCTCGCCGGGGGCGACCCCCGT
CCCCTGGGCAGGCCAGGTCACCCCCCTGCGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:26412..27493-

>mRNA_S-ischiensis_contig10.1224.1 ID=mRNA_S-ischiensis_contig10.1224.1|Name=mRNA_S-ischiensis_contig10.1224.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig10:26412..27493- (Schizocladia ischiensis KU_0333)
GGGGACCATGAGCAGTGGGTGGCATTTTCCCGGGAAGCAGGGGGACCATG
AGCAGTGGGTGGCATTTTCCCGGGAAGCAGGCCCAGCCCCGCCCCCTGGC
CACTGGCACCGACCACCCTCCATCCCCGCGGCTGGGCAACCGCGACGCCA
GCCCCGCCACTGCCGCCGCCGCCGCCGGAGCCGCTACCACCACACCAACA
CCTTCGCTCGAGGAAGGCCCCGGGGGCTCGCCCCACGGCCACCAGTCACC
ACGGCACCAACAATGCTTTATCGGTGGCGGGGAGGAAGCGTCCAAGCAGC
CACTGCCTCTCAGGCTGTCGGAGTCGAGGGGGTCACCGCCACTGGCACGC
CCGCCCGGGCCGCCCGACGCCTCCGCGTCGCTGTCGGGCTCCCATGCGGC
CCACCCGGAGGCCCCTGCCCCCCCAAACACGCAAACTGTCACTGGTGGAG
CTCGCCGGGGGCGACCCCCGTCCCCTGGGCAGGCCAGGTCACCCCCCTGC
GGGCCCAGCCCCGCCCCCTGGCCACTGGCACCGACCACCCTCCATCCCCG
CGGCTGGGCAACCGCGACGCCAGCCCCGCCACTGCCGCCGCCGCCGCCGG
AGCCGCTACCACCACACCAACACCTTCGCTCGAGGAAGGCCCCGGGGGCT
CGCCCCACGGCCACCAGTCACCACGGCACCAACAATGCTTTATCGGTGGC
GGGGAGGAAGCGTCCAAGCAGCCACTGCCTCTCAGGCTGTCGGAGTCGAG
GGGGTCACCGCCACTGGCACGCCCGCCCGGGCCGCCCGACGCCTCCGCGT
CGCTGTCGGGCTCCCATGCGGCCCACCCGGAGGCCCCTGCCCCCCCAAAC
ACGCAAACTGTCACTGGTGGAGCTCGCCGGGGGCGACCCCCGTCCCCTGG
GCAGGCCAGGTCACCCCCCTGCGG
back to top