mRNA_S-ischiensis_contig1.369.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.369.1
Unique NamemRNA_S-ischiensis_contig1.369.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.369.1 vs. uniprot
Match: A0A6H5L2U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.500e-23
Identity = 77/207 (37.20%), Postives = 104/207 (50.24%), Query Frame = 1 
Query:  307 ARALENLVLWEGAVSLNVTEPS-LVWV-AARPREGHGTACARHGLEPTGRLLLLQDERRQGW-------------------------------VEPLTWSLDVLTAVARGLGHGLSNPSGVAGCCVPGMWCSADGCLTHAFGDAFANHGSFLGMQGDAFSVFSCR---VPPASPQPPGTPGPGARAGAPSNGTGNSTAVDADGSSSV 819
            A A E L+L +  ++L  TE S L WV AA  REGH  AC R+GL+PT   + L D+                                     +PL WS ++LT +A GLG  L    G+AGCCVPGMWC   GC T AFGD F+N+G ++G+  D +S+++C+   VP A+P    TP P        NG+  S A  A GS++ 
Sbjct:   36 AAAAEALLLADEPLTL--TEGSGLYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQALPALQAAVPVEGAPDGAASSTPRNASSSDATTPPPAQPL-WSENLLTVIANGLGLELERSGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPADDYSIYTCKEPSVPLAAPVDSSTPAPAV------NGSDPSHAASAHGSTTA 233
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BLAST of mRNA_S-ischiensis_contig1.369.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.020e-21
Identity = 65/164 (39.63%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  358 VTEPS-LVWV-AARPREGHGTACARHGLEPTGRLLLLQDE-----------------------RRQGWVEPLT-------WSLDVLTAVARGLGHGLSNPSGVAGCCVPGMWCSADGCLTHAFGDAFANHGSFLGMQGDAFSVFSCR---VPPASPQPPGTPGP 744
            +TE S L WV AA  REGH  AC R+GL+PT   + L D+                       R     +  T       WS +++T VA GLG  L  P G+AGCCVPGMWC   GC T AFGD F+N+G ++G+  D +S+++C+   VP A+P    TP P
Sbjct:   39 LTEGSALYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQTLPALQAAEQAEEAPEGAASSTPRNASSSDAATPPPARPLWSENLVTVVANGLGLELERPGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPPDDYSIYTCKEPSVPLAAPADSSTPAP 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2U7_9PHAE5.500e-2337.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI05_ECTSI1.020e-2139.63RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:2409354..2410912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D7FI05
KEGG koko:K19037
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size861
Cds size861
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.369.1prot_S-ischiensis_contig1.369.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 2409354..2410912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.902359-CDS-S-ischiensis_contig1:2409353..24095281622815411.902359-CDS-S-ischiensis_contig1:2409353..2409528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2409354..2409528 -
1695739686.8782434-CDS-S-ischiensis_contig1:2409353..24095281695739686.8782434-CDS-S-ischiensis_contig1:2409353..2409528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2409354..2409528 -
1622815411.9171934-CDS-S-ischiensis_contig1:2410061..24102761622815411.9171934-CDS-S-ischiensis_contig1:2410061..2410276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2410062..2410276 -
1695739686.890618-CDS-S-ischiensis_contig1:2410061..24102761695739686.890618-CDS-S-ischiensis_contig1:2410061..2410276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2410062..2410276 -
1622815411.9388475-CDS-S-ischiensis_contig1:2410441..24109121622815411.9388475-CDS-S-ischiensis_contig1:2410441..2410912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2410442..2410912 -
1695739686.9003007-CDS-S-ischiensis_contig1:2410441..24109121695739686.9003007-CDS-S-ischiensis_contig1:2410441..2410912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 2410442..2410912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.369.1

>prot_S-ischiensis_contig1.369.1 ID=prot_S-ischiensis_contig1.369.1|Name=mRNA_S-ischiensis_contig1.369.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=287bp
GCKASDCTGRWGEAVTGEGNRGWVVICPRSFFERRCVRDARQLVMARGCS
VVGRVSGAPPTTRIRSYLCLLALIFLLPLEASASSGPDGSTGVRSEMPGR
PSARALENLVLWEGAVSLNVTEPSLVWVAARPREGHGTACARHGLEPTGR
LLLLQDERRQGWVEPLTWSLDVLTAVARGLGHGLSNPSGVAGCCVPGMWC
SADGCLTHAFGDAFANHGSFLGMQGDAFSVFSCRVPPASPQPPGTPGPGA
RAGAPSNGTGNSTAVDADGSSSVPEEGKYQEEEGEQE
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mRNA from alignment at S-ischiensis_contig1:2409354..2410912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.369.1 ID=mRNA_S-ischiensis_contig1.369.1|Name=mRNA_S-ischiensis_contig1.369.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1559bp|location=Sequence derived from alignment at S-ischiensis_contig1:2409354..2410912- (Schizocladia ischiensis KU_0333)
GGCTGCAAGGCCTCCGATTGTACGGGCAGGTGGGGCGAGGCGGTGACGGG
CGAGGGGAACCGAGGGTGGGTTGTGATTTGTCCCCGATCTTTCTTCGAGA
GAAGGTGTGTGAGGGATGCACGCCAGCTGGTGATGGCCAGAGGATGCAGC
GTTGTAGGACGTGTGTCAGGGGCTCCCCCGACGACCCGTATCCGGTCCTA
CCTCTGCCTCCTGGCGCTTATCTTCCTCTTACCTCTGGAAGCATCAGCTT
CATCAGGCCCGGATGGTTCCACGGGCGTCAGGTCAGAGATGCCCGGCCGG
CCCTCTGCGCGGGCGTTGGAGAACCTCGTGCTTTGGGAGGGTGCTGTGTC
GCTGAACGTCACGGAGCCGTCCCTGGTGTGGGTGGCGGCGCGGCCCCGGG
AAGGCCACGGTACCGCCTGTGCGAGGCATGGACTTGAGCCGACTGGCCGG
CTGTTGCTCCTGCAAGATGAGGCAAGTCAGGGGCGGCCTCTTCAACTGTA
GAGTACTCATGCAAGTATGCAAGTATCCCCGGAAGTTTTCCTGGGACTGC
TGATGGTGGGTGCCGCGGACCTGTGGCTTTGACTGAGGCTGAAACTAACC
CTGGCCCCTGCCTCTCTGACCCCGGCGCCTACCCAGCGGCGGCAGGGATG
GGTCGAGCCTTTGACTTGGTCCTTGGACGTGCTGACAGCTGTGGCCCGCG
GGTTGGGCCACGGACTGTCGAATCCATCTGGCGTTGCTGGCTGCTGCGTC
CCGGGGATGTGGTGCTCTGCGGACGGATGTCTGACGCACGCCTTTGGTGA
CGCCTTTGCTAACCACGGCAGCTTCTTGGGCATGCAGGGTGATGCTTTCA
GGTGAGGGCAAGCGAGCAGGGCAGTAAACTACCTGGTTTCTCGAAGCTGT
ACAGTACTCATCCATGTCCAACACAATTCACAACATGGTATTTGGTTGCC
ACAGGCCGTTTGCCGGGTGATACAGCAGTTAAGTCCCATGCCTACAGTAT
GCGGGGTGGGTGTGCGGGAGGCTGTGGGACCAGGCTGGCTGCTGCCCCAT
CGGCATCCGACCTCACGAACGTCGGCCTGCCCCACGGTAGCTACTCGCTG
CCTACCCGCCCATCCCGCCCCCCTTTCTCTCTCTCCCCCCCCCGGCCCTC
ATTTCTCTCTCTCTCTCTCTCCCTCTGGTCCTCCCCTCCTTCCCTCATCC
CCCCTGAATGCAATCACGGGTACCTATCCGCAGCTCCAACTTCGGTAGCC
AGTACATAGTGCGTAAAATGTACTGTCCTCCGCCGCAAGTCGGGGAGGGG
ACCTGGTTGAACTGTCGCTTCTCTCATCGCTCCCTGCCCGTTCCTGGTCT
TAGAAACAACCTGTGGCCCTCTCGTCCCCCCCAGTGTGTTCTCGTGCCGG
GTGCCACCGGCGTCACCACAACCGCCAGGTACGCCGGGGCCCGGGGCCAG
GGCAGGGGCGCCAAGCAATGGCACGGGGAATTCCACTGCCGTGGACGCCG
ACGGGTCCTCCTCTGTGCCAGAGGAGGGAAAATACCAGGAGGAGGAGGGT
GAGCAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:2409354..2410912-

>mRNA_S-ischiensis_contig1.369.1 ID=mRNA_S-ischiensis_contig1.369.1|Name=mRNA_S-ischiensis_contig1.369.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1722bp|location=Sequence derived from alignment at S-ischiensis_contig1:2409354..2410912- (Schizocladia ischiensis KU_0333)
GGCTGCAAGGCCTCCGATTGTACGGGCAGGTGGGGCGAGGCGGTGACGGG
CGAGGGGAACCGAGGGTGGGTTGTGATTTGTCCCCGATCTTTCTTCGAGA
GAAGGTGTGTGAGGGATGCACGCCAGCTGGTGATGGCCAGAGGATGCAGC
GTTGTAGGACGTGTGTCAGGGGCTCCCCCGACGACCCGTATCCGGTCCTA
CCTCTGCCTCCTGGCGCTTATCTTCCTCTTACCTCTGGAAGCATCAGCTT
CATCAGGCCCGGATGGTTCCACGGGCGTCAGGTCAGAGATGCCCGGCCGG
CCCTCTGCGCGGGCGTTGGAGAACCTCGTGCTTTGGGAGGGTGCTGTGTC
GCTGAACGTCACGGAGCCGTCCCTGGTGTGGGTGGCGGCGCGGCCCCGGG
AAGGCCACGGTACCGCCTGTGCGAGGCATGGACTTGAGCCGACTGGCCGG
CTGTTGCTCCTGCAAGATGAGGGCTGCAAGGCCTCCGATTGTACGGGCAG
GTGGGGCGAGGCGGTGACGGGCGAGGGGAACCGAGGGTGGGTTGTGATTT
GTCCCCGATCTTTCTTCGAGAGAAGGTGTGTGAGGGATGCACGCCAGCTG
GTGATGGCCAGAGGATGCAGCGTTGTAGGACGTGTGTCAGGGGCTCCCCC
GACGACCCGTATCCGGTCCTACCTCTGCCTCCTGGCGCTTATCTTCCTCT
TACCTCTGGAAGCATCAGCTTCATCAGGCCCGGATGGTTCCACGGGCGTC
AGGTCAGAGATGCCCGGCCGGCCCTCTGCGCGGGCGTTGGAGAACCTCGT
GCTTTGGGAGGGTGCTGTGTCGCTGAACGTCACGGAGCCGTCCCTGGTGT
GGGTGGCGGCGCGGCCCCGGGAAGGCCACGGTACCGCCTGTGCGAGGCAT
GGACTTGAGCCGACTGGCCGGCTGTTGCTCCTGCAAGATGAGCGGCGGCA
GGGATGGGTCGAGCCTTTGACTTGGTCCTTGGACGTGCTGACAGCTGTGG
CCCGCGGGTTGGGCCACGGACTGTCGAATCCATCTGGCGTTGCTGGCTGC
TGCGTCCCGGGGATGTGGTGCTCTGCGGACGGATGTCTGACGCACGCCTT
TGGTGACGCCTTTGCTAACCACGGCAGCTTCTTGGGCATGCAGGGTGATG
CTTTCAGCGGCGGCAGGGATGGGTCGAGCCTTTGACTTGGTCCTTGGACG
TGCTGACAGCTGTGGCCCGCGGGTTGGGCCACGGACTGTCGAATCCATCT
GGCGTTGCTGGCTGCTGCGTCCCGGGGATGTGGTGCTCTGCGGACGGATG
TCTGACGCACGCCTTTGGTGACGCCTTTGCTAACCACGGCAGCTTCTTGG
GCATGCAGGGTGATGCTTTCAGTGTGTTCTCGTGCCGGGTGCCACCGGCG
TCACCACAACCGCCAGGTACGCCGGGGCCCGGGGCCAGGGCAGGGGCGCC
AAGCAATGGCACGGGGAATTCCACTGCCGTGGACGCCGACGGGTCCTCCT
CTGTGCCAGAGGAGGGAAAATACCAGGAGGAGGAGGGTGAGCAGGAGTGT
GTTCTCGTGCCGGGTGCCACCGGCGTCACCACAACCGCCAGGTACGCCGG
GGCCCGGGGCCAGGGCAGGGGCGCCAAGCAATGGCACGGGGAATTCCACT
GCCGTGGACGCCGACGGGTCCTCCTCTGTGCCAGAGGAGGGAAAATACCA
GGAGGAGGAGGGTGAGCAGGAG
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