mRNA_S-ischiensis_contig1.235.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.235.1
Unique NamemRNA_S-ischiensis_contig1.235.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: A0A836CBX4_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.460e-17
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:  693 KALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLPIPAGTLDPSTG---KLAVAYGATLATGPGRGLLTITLTPGVARRWWAF 959
            K ++K+YG V  +LH S+FLTT GG YAAL  G+D+NAL+  LP   G    S G   +LAVAYGATL TGP R +LT+  TP VA  W A+
Sbjct:  107 KHIMKEYGPVAATLHGSVFLTTLGGMYAALEKGLDINALLAQLPFIDGAALGSGGAGGQLAVAYGATLMTGPARTILTVVATPKVAHVWHAY 198
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: K3W9R1_GLOUD (DUF1279 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9R1_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 1.410e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  690 VKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLP-IPAGTLDPSTGKLAVAYGATLATGPGRGLLTITLTPGVAR 944
            VK ++K YG   +  H+++F+TTF G YAA+ HGVD+  ++  +P +    +DP  G LA+AY +TLATGP RG LTIT  P +AR
Sbjct:    5 VKHVLKTYGRTALLFHSTVFVTTFSGSYAAIRHGVDLRHVMERVPFVDLSKMDPEAGTLALAYVSTLATGPARGALTITAVPFLAR 90
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: A0A024GJM7_9STRA (DUF1279 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJM7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.110e-14
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  690 VKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLP-IPAGTLDPSTGKLAVAYGATLATGPGRGLLTITLTPGVAR 944
            ++ ++K+YG +  + H S+F  TFG  Y  +  GVDV   +  +P + A  +D S G LA AY ATLATGP RGLLTIT TP +AR
Sbjct:    5 LRVVMKKYGKIAAAFHASMFAATFGASYGVIRSGVDVETFLDRIPMVDARKVDASAGSLACAYIATLATGPARGLLTITATPMLAR 90
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: A0A3M6VGJ4_9STRA (DUF1279 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGJ4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.980e-13
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 3 
Query:  684 SAVKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLP-IPAGTLDPSTGKLAVAYGATLATGPGRGLLTITLTPGVAR 944
            ++VK ++K+YG      H+++F++T  G YAA+  GVD+ +L   +P +    LDP+   LA+AY +T+ATGP RG LTI ++P +AR
Sbjct:    3 ASVKQVLKRYGRTAFLFHSTVFVSTLAGTYAAINQGVDLQSLAKRVPFVDLSKLDPNASTLALAYVSTVATGPARGALTIAVSPILAR 90
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.210e-11
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:  630 AAAKRVAWWADLWH----KLSPSAVKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHG-VDVNALIHVLPIPAGTLDPS-TGKLAVAYGATLATGPGRGLLTITLTPGVAR 944
            A A +    AD W     K++   +K  +K+YG V  + H S+FL T G  Y+ + +G +D+  L+  +PI A  L P+  G LA+AYG T A GP R +LT+T+TP +AR
Sbjct:  107 AVASKAPTLADRWKAARSKVTAEYLKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIAR 217
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BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Match: A0A835ZET6_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.140e-11
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:  669 HKLSPSAVKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLPIPAG---TLDPSTGKLAVAYGATLATGPGRGLLTITLTPGVARRW 950
            ++LS   +    ++YG V   +H+S+++ T G  Y A+  G+D+ +L+  +P+      T + + G LAVAYGAT+ TGP R ++TIT TP  A  W
Sbjct:    4 NRLSHENLLRFARKYGPVAGVVHSSVYVCTLGSMYTAIASGLDLTSLLAQIPLMDQDLLTANAAAGHLAVAYGATMLTGPMRAVVTITATPAAADVW 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CBX4_9STRA2.460e-1753.26DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
K3W9R1_GLOUD1.410e-1547.67DUF1279 domain-containing protein n=1 Tax=Globispo... [more]
A0A024GJM7_9STRA1.110e-1447.67DUF1279 domain-containing protein n=2 Tax=Albugo c... [more]
A0A3M6VGJ4_9STRA9.980e-1342.05DUF1279 domain-containing protein n=1 Tax=Peronosp... [more]
D8LFS1_ECTSI4.210e-1139.64DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZET6_9STRA6.140e-1137.11DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:1538145..1540646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue6e-14
Seed eggNOG ortholog65071.PYU1_T001702
EggNOG free text desc.Protein of unknown function (DUF1279)
EggNOG OGs1MI9Z@121069,2D0X6@1,2S4UH@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-01_001150.1
Exons2
Model size2390
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.235.1prot_S-ischiensis_contig1.235.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 1538381..1539386 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.7566278-UTR-S-ischiensis_contig1:1538144..15383801622815396.7566278-UTR-S-ischiensis_contig1:1538144..1538380Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1538145..1538380 +
1695739680.0148697-UTR-S-ischiensis_contig1:1538144..15383801695739680.0148697-UTR-S-ischiensis_contig1:1538144..1538380Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1538145..1538380 +
1622815396.7969077-UTR-S-ischiensis_contig1:1539386..15406461622815396.7969077-UTR-S-ischiensis_contig1:1539386..1540646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1539387..1540646 +
1695739680.078751-UTR-S-ischiensis_contig1:1539386..15406461695739680.078751-UTR-S-ischiensis_contig1:1539386..1540646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1539387..1540646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.768413-CDS-S-ischiensis_contig1:1538380..15384331622815396.768413-CDS-S-ischiensis_contig1:1538380..1538433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1538381..1538433 +
1695739680.0270207-CDS-S-ischiensis_contig1:1538380..15384331695739680.0270207-CDS-S-ischiensis_contig1:1538380..1538433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1538381..1538433 +
1622815396.7794478-CDS-S-ischiensis_contig1:1538545..15393861622815396.7794478-CDS-S-ischiensis_contig1:1538545..1539386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1538546..1539386 +
1695739680.0364633-CDS-S-ischiensis_contig1:1538545..15393861695739680.0364633-CDS-S-ischiensis_contig1:1538545..1539386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1538546..1539386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.235.1

>prot_S-ischiensis_contig1.235.1 ID=prot_S-ischiensis_contig1.235.1|Name=mRNA_S-ischiensis_contig1.235.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=298bp
MNSLLGARFTSPLLCGRRSITGGDSWRRTTELRCAAAAAMSTDMRPRRDA
DAGSLQGSEYPATRQRSCATPRPPWPAQRPHAATHAAPVPSVKASQAVHA
GPDTAAASEPRPPTAAARAAEHAAGKATPDPAAAKRVAWWADLWHKLSPS
AVKALVKQYGAVGVSLHTSIFLTTFGGFYAALTHGVDVNALIHVLPIPAG
TLDPSTGKLAVAYGATLATGPGRGLLTITLTPGVARRWWAFTGKGLPSSP
RSVAKNRAVLSPTAVVEGKDVVAPVPSGSSEQGTGGKDVSRKDRRGI*
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mRNA from alignment at S-ischiensis_contig1:1538145..1540646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.235.1 ID=mRNA_S-ischiensis_contig1.235.1|Name=mRNA_S-ischiensis_contig1.235.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2502bp|location=Sequence derived from alignment at S-ischiensis_contig1:1538145..1540646+ (Schizocladia ischiensis KU_0333)
ACGCGATGTCGTAAGAAACAACCTCGTCGACGACGAAGGGGGGAAGGGCT
CCATGGAGGGAGCCGCAACCGTTGCCACCGTCTAAACCTTAGTCTCCAGT
CCTTAGGTGGGAGACGGGGGCGGGTACCTGGGGAAAACTCACGTTTTCAT
ACTCGGGGCCCAGCGGGTGCCATCTCTTCGCAAGCCAAAAACTTTGCACG
GAGGGCCGCACATACGTTGGCACGAGCACCAGCATCATGAATTCTCTACT
TGGCGCAAGATTTACGTCGCCGCTGCTGTGCGGGAGGAGGTGAGACGTGG
GCAGGTGCGGTCCTCCTGTTCCTGTGCCGGACCGCATGTTTAGCCCCGGC
AATGGCATCCTGCTCCTTTCTGACAAACAACCGTGTGCAACTTGCGCGCA
GGAGCATCACAGGGGGGGATTCATGGAGACGGACTACCGAGCTACGTTGC
GCTGCCGCGGCTGCCATGTCCACGGATATGCGCCCGCGAAGGGACGCGGA
CGCGGGGTCCCTACAGGGGTCTGAGTACCCAGCGACTCGGCAACGCAGCT
GCGCAACACCCAGGCCGCCTTGGCCGGCGCAGCGGCCACATGCAGCCACA
CATGCAGCGCCGGTGCCGAGTGTTAAGGCATCCCAAGCGGTGCATGCCGG
GCCTGACACCGCAGCGGCCTCGGAGCCCCGACCTCCAACAGCTGCGGCCC
GCGCCGCAGAGCATGCCGCGGGGAAGGCAACCCCCGATCCCGCTGCGGCG
AAGCGCGTGGCGTGGTGGGCAGACCTGTGGCACAAGCTCTCGCCGTCGGC
CGTGAAGGCCCTCGTGAAGCAGTACGGGGCGGTGGGGGTCAGCCTGCACA
CGTCCATCTTCCTGACCACCTTCGGAGGCTTCTACGCCGCCCTCACTCAC
GGCGTGGATGTCAACGCGCTCATCCACGTGCTCCCCATCCCCGCCGGCAC
ACTGGACCCCAGCACGGGCAAGCTCGCCGTCGCTTACGGGGCCACACTTG
CGACCGGCCCCGGGCGCGGGCTTCTCACCATCACCCTCACCCCGGGTGTG
GCACGGCGGTGGTGGGCCTTCACCGGCAAGGGTCTTCCGTCGTCGCCCCG
CAGCGTGGCGAAGAACCGGGCGGTGTTGAGCCCAACAGCCGTGGTGGAAG
GTAAGGATGTCGTGGCGCCCGTGCCCTCGGGCTCTTCTGAGCAGGGCACG
GGGGGGAAGGACGTGTCACGGAAAGATAGACGAGGTATATAGGTATGTGC
CCCCGGGGCAGTAGAGGTGAGCACTTGATTGGGCAAGCCTCGCTCGGCTT
TCCAGAGGTACCTACTTGTACTACTACATAGTAGCAGTACGCTAGTGGAA
CACCAACGTGCTTGGAAGTGCGACCTCGCCGGGCCAGGCGACCCTCAAGC
GGGATTCAGAGCATGCTCCGGAATTACTGGTGCGTACGAGTACGAGTACC
AAGATAGTTCGTTCACATATTGTAGAGGAGCACTTTGTACCTACAGTGTA
GCGCTTGTTGAGCTGCCGTCGTGCCGGCCCCGACCGCCGACCGCCTTAGC
GCCTCGCCGCCACTGTGAACCTGTAGCTCCGACGACAGCAGGCGAGGCCG
GCATCCCTCCAGGGCTCTTCCCTGGGGTGTGTGATAGGATAGGGGAGGAC
CCGCCGGGCCTAGGAGTTGCACTACTAGTACCTGTCGAACAACAAGCGTG
TGACCGCGATACGAGGTCCTTGCCGTGTTGGTGGACAGGCCCGGGTGCTT
TCTGCCTCCCGCCGCATGGCCGAGGGATGCCGTGAATGGCGGGGGGGGGT
AGAAGTGCTGAGGACAAGTAGCGAGAAGTAGCGGAATTGCCCATTGGTCG
GGAAATACGCGCGGGTGCTGCGATAGGGTCGTTCACTACATCCTTGTTTG
TATCGTGTTGTTTCCATATGTCTGAAGTGTGTGTGTGTGTGTTTCTCATT
TGTTTCCGTTTTTTGTTTTTTTGTGTCCCTGGTCTCTGGGGTGTGATGTG
TGTTTTTGGCCTTTTGCGTGTGTATCGCGCTCGACGGCTGCCATACAGCA
GTACTGTACTGTAGTAGCCCATAGCACAAGTTGTCCATTGGAGTGCGTGT
GTACGATGCGGTGGTGTGCGAGCGGTGCTGGCGTGGCCAGGATTGTGCCA
GATGCCGAGCCGCAGTTTTGTTGATGGTTCATGTTCTTTGACGCATTCCT
AGTACTGTACCTAGTACTGCACTCCTGCAGTCTCGTACATGCTTGCGTGT
TTTGCTTGTAACTCTCGAGGAGCGCGCTTGTACCACGGAAAGTCAGTTGC
GTGGCGGTTACATACATGACAGTTACACATGCTGGCCGGGCGACCCTTGG
GCTGGCGTTTGCTTGCCCTCCCCCGAGCTGCCGCGACTGTAGTTTCGGCC
CCCGCGGGGCGGGTGGTTTGGGCTCAGTTTCTTTTTGCTGCAGACTCATG
AAGAGCGCGCCAGAAGCACTACTGGCATCCATAAAGAACGAGGTCGATTT
TG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:1538145..1540646+

>mRNA_S-ischiensis_contig1.235.1 ID=mRNA_S-ischiensis_contig1.235.1|Name=mRNA_S-ischiensis_contig1.235.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1788bp|location=Sequence derived from alignment at S-ischiensis_contig1:1538145..1540646+ (Schizocladia ischiensis KU_0333)
ATGAATTCTCTACTTGGCGCAAGATTTACGTCGCCGCTGCTGTGCGGGAG
GAGATGAATTCTCTACTTGGCGCAAGATTTACGTCGCCGCTGCTGTGCGG
GAGGAGGAGCATCACAGGGGGGGATTCATGGAGACGGACTACCGAGCTAC
GTTGCGCTGCCGCGGCTGCCATGTCCACGGATATGCGCCCGCGAAGGGAC
GCGGACGCGGGGTCCCTACAGGGGTCTGAGTACCCAGCGACTCGGCAACG
CAGCTGCGCAACACCCAGGCCGCCTTGGCCGGCGCAGCGGCCACATGCAG
CCACACATGCAGCGCCGGTGCCGAGTGTTAAGGCATCCCAAGCGGTGCAT
GCCGGGCCTGACACCGCAGCGGCCTCGGAGCCCCGACCTCCAACAGCTGC
GGCCCGCGCCGCAGAGCATGCCGCGGGGAAGGCAACCCCCGATCCCGCTG
CGGCGAAGCGCGTGGCGTGGTGGGCAGACCTGTGGCACAAGCTCTCGCCG
TCGGCCGTGAAGGCCCTCGTGAAGCAGTACGGGGCGGTGGGGGTCAGCCT
GCACACGTCCATCTTCCTGACCACCTTCGGAGGCTTCTACGCCGCCCTCA
CTCACGGCGTGGATGTCAACGCGCTCATCCACGTGCTCCCCATCCCCGCC
GGCACACTGGACCCCAGCACGGGCAAGCTCGCCGTCGCTTACGGGGCCAC
ACTTGCGACCGGCCCCGGGCGCGGGCTTCTCACCATCACCCTCACCCCGG
GTGTGGCACGGCGGTGGTGGGCCTTCACCGGCAAGGGTCTTCCGTCGTCG
CCCCGCAGCGTGGCGAAGAACCGGGCGGTGTTGAGCCCAACAGCCGTGGT
GGAAGGTAAGGATGTCGTGGCGCCCGTGCCCTCGGGCTCTTCTGAGCAGG
GCACGGGGGGGAAGGACGTGTCACGGAAAGATAGACGAGGTATATAGGAG
CATCACAGGGGGGGATTCATGGAGACGGACTACCGAGCTACGTTGCGCTG
CCGCGGCTGCCATGTCCACGGATATGCGCCCGCGAAGGGACGCGGACGCG
GGGTCCCTACAGGGGTCTGAGTACCCAGCGACTCGGCAACGCAGCTGCGC
AACACCCAGGCCGCCTTGGCCGGCGCAGCGGCCACATGCAGCCACACATG
CAGCGCCGGTGCCGAGTGTTAAGGCATCCCAAGCGGTGCATGCCGGGCCT
GACACCGCAGCGGCCTCGGAGCCCCGACCTCCAACAGCTGCGGCCCGCGC
CGCAGAGCATGCCGCGGGGAAGGCAACCCCCGATCCCGCTGCGGCGAAGC
GCGTGGCGTGGTGGGCAGACCTGTGGCACAAGCTCTCGCCGTCGGCCGTG
AAGGCCCTCGTGAAGCAGTACGGGGCGGTGGGGGTCAGCCTGCACACGTC
CATCTTCCTGACCACCTTCGGAGGCTTCTACGCCGCCCTCACTCACGGCG
TGGATGTCAACGCGCTCATCCACGTGCTCCCCATCCCCGCCGGCACACTG
GACCCCAGCACGGGCAAGCTCGCCGTCGCTTACGGGGCCACACTTGCGAC
CGGCCCCGGGCGCGGGCTTCTCACCATCACCCTCACCCCGGGTGTGGCAC
GGCGGTGGTGGGCCTTCACCGGCAAGGGTCTTCCGTCGTCGCCCCGCAGC
GTGGCGAAGAACCGGGCGGTGTTGAGCCCAACAGCCGTGGTGGAAGGTAA
GGATGTCGTGGCGCCCGTGCCCTCGGGCTCTTCTGAGCAGGGCACGGGGG
GGAAGGACGTGTCACGGAAAGATAGACGAGGTATATAG
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