mRNA_S-ischiensis_contig1.213.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: D8LCG2_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG2_ECTSI) HSP 1 Score: 205 bits (522), Expect = 2.150e-58 Identity = 106/254 (41.73%), Postives = 156/254 (61.42%), Query Frame = 2
Query: 167 PATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACETELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQRGLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFS-SLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDYVNVSRHEVEGVEVTPYQWGDRAILEGLVLNNV 925
PAT L A+ ++L W+RRVS ++ SYR ++ + E WR TA+V H L+H+ F+ +SLW+C+ ETELGS YL+ S F+V F H L++ G + D+ S GYSGV F+W+ V++L+ DAP R + GGFV S ++V+ +L+ ++L+R+SSF+GHL G+ GL F GA + ++ +W AW A+L SLKATT +P+P IDYV++S + GV V P W +R LE N
Sbjct: 55 PATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFEKMFMHVLLRTG--RVVDEVSCGYSGVVFAWIVVLSLRPDAPARVI-GGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAPLDWSNREWLEDWAAANA 305
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: A0A4D9CU66_9STRA (Rhomboid domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU66_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.720e-43 Identity = 94/225 (41.78%), Postives = 129/225 (57.33%), Query Frame = 2
Query: 167 PATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACETELGSRRYLVTSLQFLVFQRAFLLAVYHY----LVQRGLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDY 829
PATA A+ VI+ W RVS + VSFSY VVEK E WR TA+ +HLDL HI FN +LW C++ E LG R++V SL +V + +LAV ++ L A + SVGYS V F+W+T+++ P L G + S A + SL+ T+L+VRR+S +GH GI GL LG L +W L W+ A+L SLKATT +P+P ++Y
Sbjct: 14 PATAVTCAVLVVIWFFLWNHRVSADKVSFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFIVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFY-GPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLSSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEY 237
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: W7TIX3_9STRA (Rhomboid protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIX3_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.760e-41 Identity = 93/225 (41.33%), Postives = 129/225 (57.33%), Query Frame = 2
Query: 167 PATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACETELGSRRYLVTSLQFLVFQRAFLLAVYHY----LVQRGLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDY 829
PATA A+ VI+ W RVS + V+FSY VVEK E WR TA+ +HLDL HI FN +LW C++ E LG R+ V SL +V + +LAV ++ L A + SVGYS V F+W+T+++ P L G + S A + SL+ T+L+VRR+S +GH GI GL LG L+ +W L W+ A+L SLKATT +P+P ++Y
Sbjct: 104 PATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFY-GPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEY 327
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: A0A7S2V9M1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9M1_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.150e-37 Identity = 84/239 (35.15%), Postives = 134/239 (56.07%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACETELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQRG----LAALADQASVGYSGVAFSWVTVMAL-QKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDYVNVSRHEV 853
Q+ P T +I IY+ R+ ++V SY +VV+ E WR TA+V+H + H++FN S+W + E ++G YL S+ L+ R + + ++ L + ADQ S+GYS V F +TV+A +++ P +LP G V +P A + ++I T+L+ R++SF+GHL G+ G+ G + +W+ AW A+L SLKATT +PVPF+DYVN+ RH +
Sbjct: 34 QIINSPMTCVVIMSCIAIYVNQRANRIGADSVGISYTRVVKGMEYWRILTAAVSHANFWHLLFNVYSVWNIRLLEWKIGGWEYLCHSMLILLLARTYHFTLLWRVISSTRNPVLQSYADQVSLGYSAVIFGLMTVLATTEENMGPYQLPLGLQVEAPLAPMAAMIITQLVYRQASFLGHLSGMLAGVMVASGLLDWCLQPYWVAWGCAWGTAVLLVSLKATTNLPVPFVDYVNI-RHAI 271
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: I0Z371_COCSC (Rhomboid-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z371_COCSC) HSP 1 Score: 114 bits (286), Expect = 3.530e-25 Identity = 77/234 (32.91%), Postives = 119/234 (50.85%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACE------TELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQRGLAALADQ----ASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFI 823
QV + PAT+ + + +YL + V +Y + V+K ELWR TA V+H++L+H++FN ++LW+ E + G+R YL TSL L+F L YH L G+ +Q +VGYS V F W+T+++ + + G + SL+ T +++ R+SF+GHL GI G G F L +WL + LAW ALL L R+ VP++
Sbjct: 4 QVVERPATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVELLHLLFNLSTLWSLGVIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVL---GVVLRREQYHTVTTVGYSAVIFGWMTILS-RTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGFMVASGVFDWLTL-WWLGSLLAWSGALLVFHLVRIERLEVPWL 232
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: RBL13_ARATH (RHOMBOID-like protein 13 n=26 Tax=Brassicaceae TaxID=3700 RepID=RBL13_ARATH) HSP 1 Score: 112 bits (281), Expect = 2.080e-24 Identity = 65/229 (28.38%), Postives = 119/229 (51.97%), Query Frame = 2
Query: 155 VFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACE----TELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQR-GLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFID 826
+ + PAT+ ++ + VI+ V ++ + V SY +E G WR T++++H+ ++H++FN ++LW+ E LG+ YL +L +VF ++ +YH L+ R + +VGYS V F W+T++++++ + L G + A SLI T ++V ++SF+GHL GI G A G ++ +W L W+ + SLK + F++
Sbjct: 9 IIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIE-GHYWRMITSALSHISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFKIDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQASFLGHLSGILVGYAISWGLIGGMNN-YWALTMLGWIVVVFVFSLKKSGAYDFSFLE 235
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: UPI001FB081E2 (RHOMBOID-like protein 13 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB081E2) HSP 1 Score: 108 bits (271), Expect = 5.180e-23 Identity = 69/235 (29.36%), Postives = 119/235 (50.64%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACET----ELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQR-GLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDYVNVS 841
++ + PAT+ I I VI+ ++ + V SY +E G WR T++ +H+ ++H++FN +SLW+ E LG YL +L +V +L YH L+Q+ L +VGYS V F W+T++++++ + L G + A SLI T ++V ++SF+GHL GI G + G ++ +W L+W+ + SLK + F+D +V+
Sbjct: 8 EILEKPATSCFIGICSVIWFYIQKKNIGYSHVGLSYETALE-GHYWRIITSAFSHISVLHLVFNMSSLWSLGVVEQLGNIGLGLEFYLHYTLVLVVLSGVLVLGSYHVLIQKFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGLLSLPISFAPFESLIFTSIIVPQASFVGHLSGIIVGYSIAWGLIHGMNN-YWAITMLSWMLIIFVLSLKRSGTFNFRFLDIESVT 240
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: UPI000C1D427F (RHOMBOID-like protein 13 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D427F) HSP 1 Score: 107 bits (267), Expect = 1.730e-22 Identity = 67/235 (28.51%), Postives = 123/235 (52.34%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACET----ELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQR-GLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDYVNVS 841
++++ PAT+ +I + I+ ++ + V SY VE G WR T++++H+ ++H++FN ++LW+ E LG YL SL +V +L +YH L+Q+ + +VGYS V F W+T++++++ + L G + A SLI T ++V ++SF+GHL GI G + G ++ +W + L W+ +L SLK + F++ +V+
Sbjct: 8 EIWEKPATSCIIGLCSAIWFYIQKKNIGYSNVGLSYDTAVE-GHHWRIITSALSHISVLHLVFNMSALWSLGIIEQLGHMGLGLEYYLHYSLVLVVLSGMLVLGLYHVLIQKFKIDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIICGYSIAWGLIHGMNN-YWAVSMLGWIMLVLIFSLKKSGTYDFSFLEIESVT 240
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: A0A8J9S0I8_9CHLO (Probable rhomboid-related protein 4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0I8_9CHLO) HSP 1 Score: 107 bits (266), Expect = 2.000e-22 Identity = 74/236 (31.36%), Postives = 118/236 (50.00%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACETE-LGSRR----YLVTSLQFLVFQRAFLLAVYHYLVQRGLAALADQ----ASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFIDYV 832
QV + PAT+ + + +Y + V +Y + V+K ELWR TA ++H++L+H++FN ++LW+ E LG+R YL SL L+F L YH L G+ +Q +VG+S V F W+T+++ + + G + SL+ T +++ R+SF+GHL GI G G L +WL + AW AALL L + R+ VP++ V
Sbjct: 8 QVLERPATSVVSTLLAAVYFYITSHGIGYAEVGLNYEQAVQKLELWRIVTAQLSHIELLHLLFNVSTLWSLGVVEESGLGARSGTLYYLRISLVLLIFSGLVCLLFYHVL---GVVLRREQFLNVTTVGFSAVIFGWMTILS-RSGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGYMVASGVLDWLTL-WWLLSLTAWTAALLVFHLVRSGRLEVPWLRMV 238
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Match: A0A438I5E9_VITVI (RHOMBOID-like protein 13 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I5E9_VITVI) HSP 1 Score: 107 bits (268), Expect = 5.970e-22 Identity = 65/230 (28.26%), Postives = 116/230 (50.43%), Query Frame = 2
Query: 152 QVFQCPATATLIAIFFVIYLVSWQRRVSPEAVSFSYRKVVEKGELWRAFTASVTHLDLVHIIFNTTSLWACKACET----ELGSRRYLVTSLQFLVFQRAFLLAVYHYLVQR-GLAALADQASVGYSGVAFSWVTVMALQKDAPPRRLPGGFVVSSPSAVLFSLIATKLLVRRSSFMGHLGGIAGGLAFMLGAFSSLDEGFWLWASLAWLAALLGTSLKATTRVPVPFID 826
++ + PAT+ +I + I+ ++ + V SY +E G WR T++++H+ ++H++FN ++LW+ E +G YL +L +V +L YH L+QR L +VGYS V F W+T++++++ + L G + A SLI T ++V ++SF+GHL GI G A G + +W + L W+ + SLK + F++
Sbjct: 8 EILEKPATSCIIGLCCAIWFYIQKKNIGYSHVGLSYETAIE-GHHWRIITSALSHISVIHLVFNMSALWSLGVVEQLGHMGMGVEFYLQYTLVLVVLSGGLVLGSYHVLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGVIHGMTN-YWAVSMLGWIVLVFVFSLKRSGAYDFSFLE 235 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.213.1 >prot_S-ischiensis_contig1.213.1 ID=prot_S-ischiensis_contig1.213.1|Name=mRNA_S-ischiensis_contig1.213.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=285bp MEEPEQLVTNVIPRPDDRMDEMAPALQVFQCPATATLIAIFFVIYLVSWQback to top mRNA from alignment at S-ischiensis_contig1:1414333..1421933+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.213.1 ID=mRNA_S-ischiensis_contig1.213.1|Name=mRNA_S-ischiensis_contig1.213.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7601bp|location=Sequence derived from alignment at S-ischiensis_contig1:1414333..1421933+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:1414333..1421933+ >mRNA_S-ischiensis_contig1.213.1 ID=mRNA_S-ischiensis_contig1.213.1|Name=mRNA_S-ischiensis_contig1.213.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig1:1414333..1421933+ (Schizocladia ischiensis KU_0333)back to top |