mRNA_S-ischiensis_contig1.162.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: D8LTW6_ECTSI (40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTW6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.350e-60 Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTEE 330
PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGK REK+ANQ+LFNEDTY RC+AEVPKMKLITASGLVERLK+NGSLARAAI ELEEKGLIR V HHAQ+IYTRATN EE
Sbjct: 2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYTRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: A0A835ZCY0_9STRA (40S ribosomal protein S25 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY0_9STRA) HSP 1 Score: 160 bits (404), Expect = 7.390e-49 Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTE 327
PPK QQKSKEQK AAAMAGGK RKKKWSK K R+K+ N++LF E TY R M EVPKMKL+T S LVERLKINGSLARAAI ELEEKG+IR VS H AQL+YTRATNTE
Sbjct: 2 PPKVQQKSKEQKAAAAMAGGKSRKKKWSKNKARDKILNEVLFKEPTYERMMNEVPKMKLVTTSALVERLKINGSLARAAIRELEEKGVIRRVSHHSAQLVYTRATNTE 109
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: F0YAB4_AURAN (40S ribosomal protein S25 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YAB4_AURAN) HSP 1 Score: 155 bits (392), Expect = 4.830e-47 Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTE 327
PPK QQKSKE KMAAAMAGGK +KKKWSKGK REKMAN++LF+EDTY R +AE+PKMKLIT S LVERLK+NG+LARAAI EL+EKGLI+ VS HH Q I+TR ++
Sbjct: 2 PPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYARLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTRDVGSD 109
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: A0A7S3Y488_HETAK (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y488_HETAK) HSP 1 Score: 153 bits (386), Expect = 6.120e-46 Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTEE 330
PPKTQQKSKEQKMAAA+AGGK RKKKWSKGK REKMAN++L++EDTY R + E+PKMKLIT S LVERLK+NG+LARA++ EL EKGLI+ V+ H +Q IYTR T E
Sbjct: 14 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGSQQIYTRTTGDAE 122
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: W7TVF9_9STRA (40S ribosomal protein S25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVF9_9STRA) HSP 1 Score: 152 bits (384), Expect = 8.500e-46 Identity = 79/110 (71.82%), Postives = 95/110 (86.36%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTY-NRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTEE 330
PPK QQK+KEQK+AAAMAGGK +KKKWSKGK REK+AN++LF+E+ Y NR + E+PK KLIT S LVERLKINGSLARAA+ EL+EKGLI+ VS+HH+Q+IYTRAT E
Sbjct: 2 PPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: A0A7S2G994_9STRA (40S ribosomal protein S25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G994_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.260e-43 Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTE 327
PPKTQQKSKE KMAAAMAGGKG+KKKWSKGK REK+AN++LF E+ Y R EVPKMKLIT S LVERLKI GSLARAAI ELE + +I+ +S H +Q +YTRAT E
Sbjct: 2 PPKTQQKSKEAKMAAAMAGGKGKKKKWSKGKVREKVANKVLFEEELYERLKTEVPKMKLITPSALVERLKIGGSLARAAIKELESEEMIKRLSYHSSQWVYTRATAVE 109
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: F0WED2_9STRA (40S ribosomal protein S25 n=2 Tax=Albugo TaxID=65356 RepID=F0WED2_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.140e-41 Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRA-TNTEE 330
PPKTQQK+KEQKMAAAMAGG+G+ KKKWSK K REK+AN++L++++TY+R ++EVPKMKLITAS +VERLK+N +LAR++I +LE G I V HH QLIYTRA TN EE
Sbjct: 2 PPKTQQKTKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETYDRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAEE 112
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: A0A485LJ93_9STRA (40S ribosomal protein S25 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LJ93_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.520e-41 Identity = 73/109 (66.97%), Postives = 92/109 (84.40%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTE 327
PPKTQQK+KEQKMAAA+AGG+G+ KKKWSKGK REK AN++LF+++TY R EVPKMKLITAS +VERLK+N +LARAAI ELE+KG I+ V+ H Q+IYTR+ ++
Sbjct: 2 PPKTQQKTKEQKMAAALAGGRGKGKKKWSKGKVREKTANKVLFDQETYERMCKEVPKMKLITASAVVERLKVNATLARAAILELEQKGEIKCVTKHRCQMIYTRSVGSD 110
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: B8CCQ5_THAPS (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=B8CCQ5_THAPS) HSP 1 Score: 138 bits (347), Expect = 3.790e-40 Identity = 71/109 (65.14%), Postives = 91/109 (83.49%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTEE 330
PPK QQKSKEQKMAAAMAGGKG+KKKWSKGK R+K+ N++LF ++ ++R +EVPKMKLIT S +VE+LKI+G LAR A+++L E+G+IR VS+ AQ IYTR+ N EE
Sbjct: 2 PPKVQQKSKEQKMAAAMAGGKGKKKKWSKGKQRDKVDNKVLFTKEQHDRLNSEVPKMKLITVSSVVEKLKISGGLARRALNQLAEEGVIRPVSVSRAQRIYTRSINDEE 110
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Match: A0A067CYE5_SAPPC (40S ribosomal protein S25 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYE5_SAPPC) HSP 1 Score: 137 bits (346), Expect = 5.060e-40 Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 1
Query: 4 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKTREKMANQILFNEDTYNRCMAEVPKMKLITASGLVERLKINGSLARAAIHELEEKGLIRMVSMHHAQLIYTRATNTE 327
PPKTQQK+KEQKMAAA+AG +G+ KKKWSKGK REK N++L++++ Y R EVPKMKLITAS +VERLK+N +LARA I ELE KG I++VS H AQLIYTRA + E
Sbjct: 2 PPKTQQKTKEQKMAAALAGSRGKGKKKWSKGKAREKTQNKVLYDQEAYERMCKEVPKMKLITASAIVERLKVNAALARATIRELELKGDIKVVSKHSAQLIYTRAISAE 110 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.162.1 >prot_S-ischiensis_contig1.162.1 ID=prot_S-ischiensis_contig1.162.1|Name=mRNA_S-ischiensis_contig1.162.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp QPPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKTREKMANQILFNEDTYNRback to top mRNA from alignment at S-ischiensis_contig1:1019773..1021849- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.162.1 ID=mRNA_S-ischiensis_contig1.162.1|Name=mRNA_S-ischiensis_contig1.162.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2077bp|location=Sequence derived from alignment at S-ischiensis_contig1:1019773..1021849- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:1019773..1021849- >mRNA_S-ischiensis_contig1.162.1 ID=mRNA_S-ischiensis_contig1.162.1|Name=mRNA_S-ischiensis_contig1.162.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig1:1019773..1021849- (Schizocladia ischiensis KU_0333)back to top |