mRNA_S-ischiensis_contig1.16.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.16.1
Unique NamemRNA_S-ischiensis_contig1.16.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:128031..129675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog2880.D7FRH6
EggNOG OGs2EA42@1,2SGDE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size453
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.16.1prot_S-ischiensis_contig1.16.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 128031..129645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.0550444-CDS-S-ischiensis_contig1:128030..1281351622815380.0550444-CDS-S-ischiensis_contig1:128030..128135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 128031..128135 -
1695739667.0132058-CDS-S-ischiensis_contig1:128030..1281351695739667.0132058-CDS-S-ischiensis_contig1:128030..128135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 128031..128135 -
1622815380.0684278-CDS-S-ischiensis_contig1:128546..1286091622815380.0684278-CDS-S-ischiensis_contig1:128546..128609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 128547..128609 -
1695739667.0307157-CDS-S-ischiensis_contig1:128546..1286091695739667.0307157-CDS-S-ischiensis_contig1:128546..128609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 128547..128609 -
1622815380.081777-CDS-S-ischiensis_contig1:129390..1296451622815380.081777-CDS-S-ischiensis_contig1:129390..129645Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 129391..129645 -
1695739667.0598347-CDS-S-ischiensis_contig1:129390..1296451695739667.0598347-CDS-S-ischiensis_contig1:129390..129645Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 129391..129645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.0959284-UTR-S-ischiensis_contig1:129645..1296751622815380.0959284-UTR-S-ischiensis_contig1:129645..129675Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 129646..129675 -
1695739667.0719063-UTR-S-ischiensis_contig1:129645..1296751695739667.0719063-UTR-S-ischiensis_contig1:129645..129675Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 129646..129675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.16.1

>prot_S-ischiensis_contig1.16.1 ID=prot_S-ischiensis_contig1.16.1|Name=mRNA_S-ischiensis_contig1.16.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MVYDYFMVGPPYRKIVIHHWCNPKYSVPAANAFQGDPDEVLACAFVGMRG
SVASVGSVASKVAGAGGAVFGAACREAERRGYRSQVLMQIGSSTRSFALY
AKYGFQAMHLCHYMAGFVYDGHTRPPGPTAGGWNGPGAGDG
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mRNA from alignment at S-ischiensis_contig1:128031..129675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.16.1 ID=mRNA_S-ischiensis_contig1.16.1|Name=mRNA_S-ischiensis_contig1.16.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1645bp|location=Sequence derived from alignment at S-ischiensis_contig1:128031..129675- (Schizocladia ischiensis KU_0333)
GGGGTGTTAACGTAGCCGGTGTGTAGCCCAATGGTATACGACTATTTTAT
GGTAGGTCCTCCCTACCGTAAAATAGTCATACACCATTGGTGCAACCCGA
AGTACTCCGTACCTGCTGCAAATGCCTTCCAGGGGGACCCAGATGAAGTG
CTTGCGTGTGCCTTTGTGGGCATGCGTGGGAGCGTGGCCTCTGTTGGGAG
TGTGGCGTCCAAGGTCGCGGGCGCCGGGGGGGCAGTGTTTGGCGCGGCGT
GCCGGGAGGCGGAGAGGAGGGGGTACCGGTCTCAGGTGTGTGATGTGATG
TGTACTCTAAATGACAAATGTACAGTACTGTACTCAAGTAGTTTGACATC
ACATCACTTCGCAAAACGTACTGCACTCGAGTAGTTTTACATCACATCGC
TTCGCGTTGCTTGGTGTCCCCGTCGTGCTCAAGGGGCTCTTCGGGTGTCG
AGATGCTCAGGCATACTTGGAAGTACTATACCTACAGTGGGATGCTGGTA
CTGTAGTGTAGTAGCAGGTGCCGCGGTCCGAAGCGCTCGCGTGGTGAGGG
GGCCGGTTTTTGAAAACCCGAGTAATCTGAGGCAGCTTTTGGAGAAGGAG
TTGTCGCCGGCGTGCGCAGGTGGCTACAATAGGAGACTGGGTTTTCGAAG
CGCAGAAGTACACAGGAGGAGGAGTTTGGAAGTACTTGGAAGTACCTACT
CCCGTGGTGGGGAGAACGGGGGTCAAAATACCTGAGTACTAAGTAGTCAT
GCAGCCCTTGTCATGTACGCGCTGTTGCTTCAGAATCCCCAGTACGACGC
AGTACTACTGTAGTAGCTACGTGCGAGAGAGCTTCAAAACACCCGGGCAG
CCAAGTAGTTAGGCGACGGGGTTTCAGTGTCCCCAAGTAGTTATAGGAGA
CGGGGTTTCAGCGCACCCAAGTAGTTTAGGAGACTGCATTCTCAAAACAC
TCCAGCAGTTTACTGCCTGAGAGAGAAGAGTCCCCAAGCACCCAAAGTGG
TCTCACAGAACGAGCTTCCCCCGCCGCCACCGCCGCCGCCGCCGCCACAC
CCCACGGCCGGGGCAGGTGCTGATGCAGATCGGGTCCAGCACACGGTCCT
TCGCCCTCTACGCCAAGTACGGCTTCCAGGTCAGAGGGGGGAAAGCGTTA
TCATTGGCCCTCGGAGGTGTACGGCCAGCCGATGTGACTACTGTACAGTA
GGTAGTAGAGGACCGCCCCCCGCACCTCACCTGTCCAAACACGTGCACAC
GAGTGCAACTGTCAGCACCCTGCGCTTCTGCGAACGCCTTGCAATAGCCT
TTGCGCGTACAGTACTTGCGGTCCTAAGCAAGCGAGTGGAGTACCCCAAC
CACGTGCGAGTACAAACTGCGACTGTGGTCTGTACAGTACCCTTTCAAAC
TTGTCGCCACCACCACCACCAAGTCCTCCTCCTCCCCTGCCAAATCCTCC
TCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTTTGTTTTGTTTTTTTCCCTGTCTCCCCCGCAGGCTATGCACC
TGTGCCACTACATGGCCGGCTTTGTGTACGACGGACATACACGACCCCCG
GGGCCCACGGCCGGCGGGTGGAACGGACCTGGTGCCGGGGACGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:128031..129675-

>mRNA_S-ischiensis_contig1.16.1 ID=mRNA_S-ischiensis_contig1.16.1|Name=mRNA_S-ischiensis_contig1.16.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig1:128031..129675- (Schizocladia ischiensis KU_0333)
ATGGTATACGACTATTTTATGGTAGGTCCTCCCTACCGTAAAATAGTCAT
ACACCATTGGTGCAACCCGAAGTACTCCGTACCTGCTGCAAATGCCTTCC
AGGGGGACCCAGATGAAGTGCTTGCGTGTGCCTTTGTGGGCATGCGTGGG
AGCGTGGCCTCTGTTGGGAGTGTGGCGTCCAAGGTCGCGGGCGCCGGGGG
GGCAGTGTTTGGCGCGGCGTGCCGGGAGGCGGAGAGGAGGGGGTACCGGT
CTCAGATGGTATACGACTATTTTATGGTAGGTCCTCCCTACCGTAAAATA
GTCATACACCATTGGTGCAACCCGAAGTACTCCGTACCTGCTGCAAATGC
CTTCCAGGGGGACCCAGATGAAGTGCTTGCGTGTGCCTTTGTGGGCATGC
GTGGGAGCGTGGCCTCTGTTGGGAGTGTGGCGTCCAAGGTCGCGGGCGCC
GGGGGGGCAGTGTTTGGCGCGGCGTGCCGGGAGGCGGAGAGGAGGGGGTA
CCGGTCTCAGGTGCTGATGCAGATCGGGTCCAGCACACGGTCCTTCGCCC
TCTACGCCAAGTACGGCTTCCAGGTGCTGATGCAGATCGGGTCCAGCACA
CGGTCCTTCGCCCTCTACGCCAAGTACGGCTTCCAGGCTATGCACCTGTG
CCACTACATGGCCGGCTTTGTGTACGACGGACATACACGACCCCCGGGGC
CCACGGCCGGCGGGTGGAACGGACCTGGTGCCGGGGACGGCGCTATGCAC
CTGTGCCACTACATGGCCGGCTTTGTGTACGACGGACATACACGACCCCC
GGGGCCCACGGCCGGCGGGTGGAACGGACCTGGTGCCGGGGACGGC
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