mRNA_S-ischiensis_contig1.157.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: D7FX24_ECTSI (Rab8C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX24_ECTSI) HSP 1 Score: 316 bits (810), Expect = 8.920e-104 Identity = 165/234 (70.51%), Postives = 194/234 (82.91%), Query Frame = 1
Query: 1 GGLSKKTLSIVTNLESQSS--QSRFDLEDAEEEKRLAAEERRLKENLRQKGDEVDHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKEGQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEALEAAQRGSGDAR 696
GGLSKKTL+IVTNL+S ++ +SR ++ED E ENLRQKGD+ DHTIRILLLGDSGVGKTSLM R+SEDKFAP L+STAGVD+KVQTL++ GKRVRCQ+WDTAGQE+FHVITR YYRGAHGIAL YDVTD DSFKNVNYWMANIQTHA+ G R+QK+ILGNK+D++DR ISTK+GQ V+KEFGVRFFEVSAK G GV++AF +LA DI+ A + RG+ D R
Sbjct: 81 GGLSKKTLNIVTNLKSHTTDVRSREEMEDLEXXXXXXXXXXXXXENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFGVRFFEVSAKNGYGVSDAFYSLAVDIVAANK---RGADDRR 311
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A6H5JLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN2_9PHAE) HSP 1 Score: 265 bits (678), Expect = 1.510e-83 Identity = 133/181 (73.48%), Postives = 155/181 (85.64%), Query Frame = 1
Query: 1 GGLSKKTLSIVTNLESQSS--QSRFDLEDAEEEKRLAAEERRLKENLRQKGDEVDHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREI 537
GGLSKKTL+IVTNL+S ++ +SR ++ED EEE KENLRQKGD+ D TIRILLLGDSGVGKTSLM R+SEDKFAP L+STAGVD+KVQTL++ GKRVRCQ+WDTAGQE+FHVITR YYRGAHGIAL YDVTD DSFKNVNYWMANIQTHA+ G R+QK+ILGNK+D++DR +
Sbjct: 237 GGLSKKTLNIVTNLKSHTTDVRSREEMEDLEEEXXXXXXXXXXKENLRQKGDDFDRTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAV 417
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA) HSP 1 Score: 256 bits (653), Expect = 2.920e-82 Identity = 128/172 (74.42%), Postives = 149/172 (86.63%), Query Frame = 1
Query: 163 TIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQR--IQKIILGNKIDL--QDREISTKEGQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEALE 666
TIRILLLGDSGVGKTSLM RY+ED F+PNLLSTAGVDFKV+ L++ G+RVRCQ+WDTAGQEKFHVITRAYYRGAHGIALVYDV D+DSFKNVNYW+ANIQTHA A R I K++LGNK+DL + RE+S+ G V +EFGVR+FEVSAK+GTGV +AF TLA +I+E LE
Sbjct: 2 TIRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVRHLDINGRRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVADADSFKNVNYWVANIQTHAPAAGREGICKVLLGNKVDLPAEHREVSSAAGNEVGEEFGVRYFEVSAKDGTGVQDAFDTLAREIVEGLE 173
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: W7U9Z1_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Z1_9STRA) HSP 1 Score: 219 bits (558), Expect = 3.710e-67 Identity = 113/177 (63.84%), Postives = 140/177 (79.10%), Query Frame = 1
Query: 163 TIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQ--TLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKEGQAVSKEFG-VRFFEVSAKEGTGVNNAFRTLATDILEALEAAQRGS 684
+IRILLLGDSGVGKTSLM RYSE++FAP LLSTAGVDFKV+ TLE ++V+ Q+WDTAGQE+ HVITR YY+G+HGIALVY++TD DSF+NVNYWMANIQ HA G ++ K ++GNK DL DR IS ++G A++KE+G + FFE SAK G V+ AF LA DI+ +E AQ S
Sbjct: 105 SIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHA--GDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNES 279
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A7R9U6W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6W6_9STRA) HSP 1 Score: 204 bits (519), Expect = 2.120e-61 Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 1
Query: 169 RILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKE-GQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILE 657
R+LLLGDSGVGKTSLM RYSEDKFAP LLSTAGVDFK++ + +R KRVR Q+WDTAGQEKFHVITR++Y+GAHGI LVY VTD DSF NV YWMANI HA A +++II+GNK DL + + T++ G+ ++ EFG FFE SA G+ V A +TLA DI +
Sbjct: 126 RLLLLGDSGVGKTSLMLRYSEDKFAPVLLSTAGVDFKMRRVVLRNKRVRLQIWDTAGQEKFHVITRSFYKGAHGICLVYSVTDLDSFNNVRYWMANIHEHASA--HVRRIIVGNKSDLTLQRVVTEQMGRELADEFGDPFFETSALTGSNVAEAMQTLAEDIFD 287
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: C1E6E1_MICCC (Ras-related gtp-binding protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6E1_MICCC) HSP 1 Score: 200 bits (508), Expect = 6.270e-61 Identity = 97/178 (54.49%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 157 DHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQD-REISTKEGQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEALEAAQRGSG 687
DH I++LL+GDSGVGK+ L+ R+SED+F + ++T G+DFK++T+E+ GKRV+ Q+WDTAGQE+F IT AYYRGAHGI L YDVTD SF NV WM NI+ HA G + K+++GNK D ++ R IST++G+A++KEFG+ FFE SAK T VN+AF +A I L+ + G G
Sbjct: 9 DHLIKLLLIGDSGVGKSCLLLRFSEDQFTSSFITTIGIDFKIRTVELDGKRVKLQIWDTAGQERFRTITNAYYRGAHGILLTYDVTDEGSFNNVRNWMRNIEQHASDG--VSKVLVGNKSDAEEKRVISTEQGEALAKEFGIPFFETSAKANTNVNDAFFAIARIIKAGLKTSGDGGG 184
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A2R5GVA5_9STRA (Ras-related protein Rab-8A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVA5_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.420e-59 Identity = 101/182 (55.49%), Postives = 137/182 (75.27%), Query Frame = 1
Query: 148 DEVDHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLE----VRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKEGQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEALEAAQRG 681
D DH I+ILLLGDSGVGKTSLM R+++++F PNL+STAGVDFKV+ LE + KR++CQ+WDTAGQE+FHVITR YYRGAHGIALVYD + SFK ++YWM NI++HA GQ + ++ GNK+DL R I+ ++G+A ++ FG +F+E SAK G V AF L+ D + ++A++ G
Sbjct: 529 DRYDHHIKILLLGDSGVGKTSLMLRFADNQFQPNLMSTAGVDFKVRYLEDPVKTQNKRIKCQIWDTAGQERFHVITRTYYRGAHGIALVYDAANEQSFKQISYWMDNIRSHA--GQDVCVVLFGNKVDLPSRVITPEQGRATAEAFGAQFYETSAKSGVNVLEAFEALSIDAVGRMQASKPG 708
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A1Y2HP65_9FUNG (Ras family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HP65_9FUNG) HSP 1 Score: 195 bits (496), Expect = 5.250e-59 Identity = 93/183 (50.82%), Postives = 133/183 (72.68%), Query Frame = 1
Query: 142 KGDEVDHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKE-GQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEALEAAQRGSG 687
K DH I++LL+GDSGVGK+ L+ R+++D F P+ ++T G+DFK++T+E+ GKR++ Q+WDTAGQE+F IT AYYRGA GI L+YDVTD SF N+ W+ NI+ HA AG + KI++GNK D+ D+++ +KE GQ ++ EFG++F E SAK GV AF +LA DI + L +Q +G
Sbjct: 4 KSSTYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHASAG--VNKILVGNKCDVADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAFFSLAKDIKKRLIDSQGAAG 184
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A367K4H9_RHIAZ (GTP-binding protein n=20 Tax=Mucorales TaxID=4827 RepID=A0A367K4H9_RHIAZ) HSP 1 Score: 193 bits (491), Expect = 2.990e-58 Identity = 93/170 (54.71%), Postives = 126/170 (74.12%), Query Frame = 1
Query: 157 DHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQD-REISTKEGQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEAL 663
D+ I++LL+GDSGVGK+ L+ R+S+D F P+ ++T G+DFK++T+E+ GKR++ Q+WDTAGQE+F IT AYYRGA GI LVYDVTD SF NV W +NI+ HA G + KI++GNK D+++ R ISTK+GQ ++ E G+RF E SAK GV AF LA DI + L
Sbjct: 10 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFSNVRNWFSNIEQHASEG--VNKILIGNKSDMEEKRVISTKQGQELANELGIRFMETSAKANIGVEEAFFDLARDIKKRL 177
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Match: A0A1Y1WX38_9FUNG (Ras-domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1WX38_9FUNG) HSP 1 Score: 193 bits (490), Expect = 3.850e-58 Identity = 91/170 (53.53%), Postives = 128/170 (75.29%), Query Frame = 1
Query: 157 DHTIRILLLGDSGVGKTSLMHRYSEDKFAPNLLSTAGVDFKVQTLEVRGKRVRCQVWDTAGQEKFHVITRAYYRGAHGIALVYDVTDSDSFKNVNYWMANIQTHADAGQRIQKIILGNKIDLQDREISTKE-GQAVSKEFGVRFFEVSAKEGTGVNNAFRTLATDILEAL 663
D+ I++LL+GDSGVGK+ L+ R+SED F P+ ++T G+DFK++T+E+ GKR++ Q+WDTAGQE+F IT AYYRGA GI LVYDVTD SF N+ W+ NI+ HA G KI++GNK D+ ++++ TKE G+++++EFG+RF E SAK GV AF +LA DI + L
Sbjct: 10 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIRNIEQHASEGAN--KILIGNKCDILEKKVITKEQGESLAEEFGIRFLETSAKSNIGVEEAFFSLARDIKKRL 177 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.157.1 >prot_S-ischiensis_contig1.157.1 ID=prot_S-ischiensis_contig1.157.1|Name=mRNA_S-ischiensis_contig1.157.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=264bp GGLSKKTLSIVTNLESQSSQSRFDLEDAEEEKRLAAEERRLKENLRQKGDback to top mRNA from alignment at S-ischiensis_contig1:984190..988503+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.157.1 ID=mRNA_S-ischiensis_contig1.157.1|Name=mRNA_S-ischiensis_contig1.157.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4314bp|location=Sequence derived from alignment at S-ischiensis_contig1:984190..988503+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:984190..988503+ >mRNA_S-ischiensis_contig1.157.1 ID=mRNA_S-ischiensis_contig1.157.1|Name=mRNA_S-ischiensis_contig1.157.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1584bp|location=Sequence derived from alignment at S-ischiensis_contig1:984190..988503+ (Schizocladia ischiensis KU_0333)back to top |