mRNA_S-ischiensis_contig1.146.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.146.1
Unique NamemRNA_S-ischiensis_contig1.146.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:902033..908201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size778
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.146.1prot_S-ischiensis_contig1.146.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 902033..908200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.046739-CDS-S-ischiensis_contig1:902032..9020791622815345.046739-CDS-S-ischiensis_contig1:902032..902079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 902033..902079 +
1695739648.6419144-CDS-S-ischiensis_contig1:902032..9020791695739648.6419144-CDS-S-ischiensis_contig1:902032..902079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 902033..902079 +
1622815345.0561633-CDS-S-ischiensis_contig1:902968..9030981622815345.0561633-CDS-S-ischiensis_contig1:902968..903098Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 902969..903098 +
1695739648.67093-CDS-S-ischiensis_contig1:902968..9030981695739648.67093-CDS-S-ischiensis_contig1:902968..903098Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 902969..903098 +
1622815345.204095-CDS-S-ischiensis_contig1:903798..9040651622815345.204095-CDS-S-ischiensis_contig1:903798..904065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 903799..904065 +
1695739648.6823995-CDS-S-ischiensis_contig1:903798..9040651695739648.6823995-CDS-S-ischiensis_contig1:903798..904065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 903799..904065 +
1622815345.2174454-CDS-S-ischiensis_contig1:905002..9051281622815345.2174454-CDS-S-ischiensis_contig1:905002..905128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 905003..905128 +
1695739648.6960533-CDS-S-ischiensis_contig1:905002..9051281695739648.6960533-CDS-S-ischiensis_contig1:905002..905128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 905003..905128 +
1622815345.2304058-CDS-S-ischiensis_contig1:906272..9064131622815345.2304058-CDS-S-ischiensis_contig1:906272..906413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 906273..906413 +
1695739648.704373-CDS-S-ischiensis_contig1:906272..9064131695739648.704373-CDS-S-ischiensis_contig1:906272..906413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 906273..906413 +
1622815345.242678-CDS-S-ischiensis_contig1:908134..9082001622815345.242678-CDS-S-ischiensis_contig1:908134..908200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 908135..908200 +
1695739648.7152476-CDS-S-ischiensis_contig1:908134..9082001695739648.7152476-CDS-S-ischiensis_contig1:908134..908200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 908135..908200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.146.1

>prot_S-ischiensis_contig1.146.1 ID=prot_S-ischiensis_contig1.146.1|Name=mRNA_S-ischiensis_contig1.146.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=259bp
ISRLRANNGEEDKYPVSLADLLETLEEARQAMEGKDARLRQLQGAWEEDQ
AGRQQAETELRLASMELEGLRVLSRDLTARADERDAAVARAARLTGELED
HRRRLSIATNKGDAAAGRAEAAEAEAREGTARVSELEQAVRGLSEEAQAQ
HQELETLRASKEETRLKVAKMERELDQSRAKGALFDQRLESLEREKRDLQ
AGVRARDGRLEELEELLEAAEGKARALEEEKAGLLSKVEEWDVLSERARD
LERQLAEAR
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mRNA from alignment at S-ischiensis_contig1:902033..908201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.146.1 ID=mRNA_S-ischiensis_contig1.146.1|Name=mRNA_S-ischiensis_contig1.146.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6169bp|location=Sequence derived from alignment at S-ischiensis_contig1:902033..908201+ (Schizocladia ischiensis KU_0333)
ATATCCCGTTTGAGGGCGAACAATGGGGAAGAGGACAAGTATCCTGTGTG
AGTGGCAGGTGGTGGTTCCTTGCTTGTCAAGTAACAGTTTCCTGTACACC
CCCTGCTGTGCATTGCAAGTAGCGCCAATTTGACGGCTGACACCGTTCCT
GGGAGGCACGAGCCTCGGGGCGTCGCACACGCACTTTTTTTTTTTTCTGC
GTGAGGAGAAGAACCACGTCGATTCGTGGTATCTGTCACCGCCAACGCGA
AGAGTTTATCCCCTGCACGACATGGATAAAAAGTCCTCTTCCGTAACCGG
CGCGGGCTGTATTTGTCGACCCCGGATCGTCGTTCCACCGTAGTAAAGGA
GGCGTCAATGTGAGTACTTCCAGAAGTACTTGGAAGTACTTGGAGTACTC
CAGTACCTGTACGCAATACTTCGAAGTACTTCCGGAAGTACTCCAGTGCT
TACTGCTGCAAGTACCAGTCATTTGCTTCCCCGTGGTCCGCCGAGAGTTA
ACTCTAAGGTCTTGGGGGTTGACGGGATGCTGATGTGGTGCGATGTGATG
TGATGTGATGTGGTGTGATTTGATGTGATGTGATGCGCCTTCACTCGCGG
GGCGTGTACTCTATGCAGAGCAGAAAAACTAAGAAAAGCAAGGGAGGGAG
GAAGGGAGAGGGCAGGAGAGGATAACAGTGGAGGAGGGGTCTCTTGCGCC
ACAAAGCGGGGCGCGCAGAAGCTACGCCCATGTACTGTGGCTATCCGAAT
CAAGTATTTTTTTGTGTGGAAAGAAAAGAAGCGAGTGGAAAGTAGCGGTG
ATCCTACTTTTGCGAGTTCAGGGCCCCAACACGGGACCCCGTCATTCCCC
CGCCTTCACTCGCAGGGCACATAACTTTTGTTTTTAATAGGTCGATTTCC
TCCCCCCCCCGCCCCGCGCCGCGTTGACACTTGTAGGTCCCTCGCGGACC
TCCTGGAGACCTTGGAGGAGGCCAGGCAGGCCATGGAGGGCAAGGACGCG
CGGTTGCGGCAGCTCCAGGGGGCGTGGGAGGAGGACCAGGCTGGCCGGCA
GCAGGCTGAGACCGAGGTGTGTTGTGTGTTGGGGGAGCGACTTTTGTTGC
TGCTACCAAGAAGCACCCCCGGGGTGATCCAAATGGCTGAGTTGTGCATT
AGTGAGGTACGAAGTACATCTCACCTGTTTCAGTGAAATTGAGTGTTGTC
GTAGAGATTGATGTGATGTGATGTCAAACTACAGTACGTTGGAATACATA
CACATCACATCACAAGTTGTAGTGAGGTACAATCGCACCCGTGTGAAGCC
GAGTGTTCTAGTAGAGAAGAAATAGTGCATGAGTGTGTGACGTAACCGTT
CTGCCCCCCGCCTCCCCCCCCCCCCAAAAAAAAGCCCAACAATAGCACTC
ACAACATAGCGCGGTGTACGTCGGAGTACGTGCAGCGAATGCCGTTGATC
CACTCAGTCACTGGCAGGCGTGTGGAGAAGAAGGAGAAGGAGGAGGAGGA
GGAGGAGGGGGGAGGAGGAGGAGGAGAGAAAAAGCCAAAGCAAAGAAACG
ATGCGACAAAACAAAATCGAACACAAGAGCAAAAAAGGGACAAGAGAAGA
ACGGCGCAAAGAAGCGACGCCAAACACACACACACACGCGCGCGCGCGCT
CGCGCGCGCACGCACACACACACGCTTGGTAGTTGCGCCTGGCGTAAACA
AAAGGACAAGAGAAGAACGGCGCGAAGAAACGACGCGGGGAAAAAAATAA
CACGCACGCTTGGCAGTTACGCCTGGCGTCCATGGAGCTGGAGGGCCTGC
GCGTGCTCTCCCGCGACCTCACCGCCCGCGCGGACGAGCGGGACGCCGCG
GTCGCCCGGGCGGCCCGCCTGACGGGGGAGCTGGAGGACCACCGCAGGCG
TCTGTCTATTGCCACGAACAAAGGCGACGCGGCCGCCGGGCGCGCGGAGG
CGGCGGAGGCGGAGGCCAGGGAGGGCACGGCCAGGGTTTCTGAGCTTGAG
CAGGCGGTGCGGGGGCTGAGCGAGGAGGCACAGGTGATGTGATGTGATTT
GTTGTGACGTGTACTCTAATGTCCTGTAGTTTCATATCACATCACATCAC
GTTAACCAGGGAGGGCACCACCAGGGGTTTCCGAGCTTGAGCAGGCGGTG
CGCGGGCTGAGCGAGGAGGCCCAGGTGGGGGAGGCAGTGCACTGATGTGA
TGTGATGTGTTGTGATGTCTACTCTAATGTACTGTAGTTTGACATCACAT
CACATCACATGAATGTGGAGGCAGAGGCCAGAGAGGGCATCGCCAGGGTT
TCTGAGCTTGAGCAGGCGGTGCGCGGGCTGAGCGAGGAGGCCCAGGTGGG
GGGGACCGAGAGCGGGTTGGCGTTTCTATACACTGATGTTATGTGATGTC
ATGTCATGTGATGTGATGTGATGTGTTGTGTTGTGATGTGATTTGTGCTC
CAATGTACTGTAGTTTGACATCACATCACACTGTGACATCACACTGTGAT
GTGATGTGTTGTCATGTGTACTCTAATGTACTGTACTGAGTACTCGCAGT
TTGACATCACAGCACATGACTTTCATGTCACTGGCGACCGCAACAGCGGG
CCTTACAGTACAGTAGGTTTCTTGGCTCGCAAGGCGGAAGGCAATCAGGC
GGGGGGGCTGGGTGGGAGAGGGGGATGAGGAGAGGAGAGGAGAGGACATG
TACATTACTTCGAAGTAGTATATACTTGAAGTACTCGTGTGTATGTATAT
GTACTCACCTTGTGCTTCCCGTGGTCCCGAGATCATTGACCACGCGCCTC
GATCGAGACGGAGCAGGCCCCCTCCCTCCCCTGGCATGTACAGTAGTACA
GTACCTGAAGTACTACATAGTACTTCCAAGTACAGTACGAGTACTCCTAC
TGTAGTACCAGTCACAATAGTACCAGACAGTGAATGACAGCCCCCCGGGC
TGCCTGCTTCCGGGTGTCAGGCCCAGCACCAGGAGCTTGAAACGTTGAGG
GCGTCCAAGGAAGAGACGCGCTTGAAGGTGGCCAAGATGGAGCGGGAGCT
GGACCAGAGCAGGGCCAAGGGCGCCCTGTTTGACCAGCGCCTCGAGGTGA
ATTGGGCTGTTGTAGGGTTGGCACTTAGCCCCTTGAGGTGACTTTGGCTA
TTGTAGGGTTGGCACTTAACCAGTTGAGGTGACTTTGGCTGTTGTGGGGT
TGGCACTAAACCCCTCGACGTGACTTTGGCTGTTGTAGGGTTGGCACTAA
ACCCCTCGAGGTGACTTTGGCTAGGGTTGGCACTTAACCCCTAAGTGGTG
CCCTTGTACTCGAGTAGGCCCTTAAACTAGAGGTAATTAGGGGTAGTTAG
ACCTAAAATGAAGGCTAATTGGGCCCTAGTTAACCTCTAAGTGCCAACCC
TGACATTGGCGGGGCGGGGGTGGTAGGGCGGCCCAGGCCAGGGTGTGTGC
GTGTGTGCGCGCGTGCATGGTGTGCGTGTTTGTGCGTGTGCGCATGTGTG
TGTGTGCAGGAGAGCGAGATCAGAGAGAGATGGTGGGGAGGGAGGGAGGC
AGGGAGGGAGGAAGGGGTGGGTGGGTTGGGGgggaGGGGGGGGGAGGACC
GGAGGGGGGAGCGAGAGAGAGAAGGGGGCTTCAATGTGGGCAGGCGGCAT
GCCACCCGCCCCCAAAAAAGAAGAAAAAAAAGCCTCCAGGCCCCCCTCTC
TCAGAGCATGGGCCAGACATCTCTCCCAGCTGCCTTTCATGCCCTCTCTG
CCCCCCAAAGACCCGCTGTACTCTGTTTGTAGCCGGGGTTGGCGCTTAAC
CCCTAAGTGGTGGCCTTTTAGGCCCTCAATTAGAGGTAATTAGGGGTCAT
TAGACCTAAAATGAAGGCTAGTTAGGCCCTAGTTATCGTCTAACTGCCAA
CCCTATTTGTAACTGCCAGTCCCTGGCGGGGTAGTTGCGGTAAATACGGG
TGATTAGACATAAAATGAAGGCTAGGTAAGGCCCTAATTAACCTCTAAGT
GCCAACCTATTTGTAACTGCCAGTCCCTGGAGAGGTAGTTAACAGTAATT
ACGGGTAATTAGACCTAAAATGAAGGCTAGTTAGGCCCTAGTTAACCTCT
AGCTGCCAACCCTGTTTGTAGCTGCCAGTCCCTGGAGAGGTAGTTAACGG
TAGTTACGGGTAATTAGACATACGAAGTAAAATGAAGGCTAATTAGGCCG
TAGTTCACCTCTAAGCGCCAACCCTGTTTGTAACTGCCAGTCCTTGGAGA
GGGAAAAGCGGGACCTGCAGGCCGGGGTGCGGGCACGTGACGGGCGGCTC
GAGGAGTTGGAGGAGCTTCTGGAGGCCGCGGAGGGCAAGGCAAGGGCGTT
GGAGGAGGAGAAGGCCGGTCTCCTCTCCAAGGTGGGCAGTGATGGAATAT
CTATGCATATCAACCTATTTATCGACAGTATATATGTACTAAGTGGTGCT
TGCCGTAATCCCGAGACCATTGGCCCCGCGCCTCGTGCGAGGCGGAGCAG
GACAGTATTGATATATATACTACGTAGTACTTCGAAGTATATATATCGAT
AGCCGATATTCGATAGTTTGACCCACACTTAATCCAAGTAGTTAGTACGC
CACCCACAAAATCAGTCGGGCCCGAGCACTTCCTACTGATCGATATTCCA
TCACTGAAGGTGGGTGGATGGGTTGATCGATCGATCGAGCGCGCTCTAGC
CGCCGCTACTGCCGCCGCCGGGACCGCGCGCATCCATGCTTTTTCTATTT
TCTGCTTGCCTGCCCCTTAAAACTGCACGAACTTCGAAGTACATTGCAGC
GCGTACGCTCCTGTGCTTACCTATGGGAGGGTAGGGCTGAGTGCACCAAG
CTAACCCTAAACCCTAAGAGGAGAGGGGCGCGGGCATGAGCCCCGCCCTG
GCCGGGGTCGGTGCTCGACACGCGTGAATGGGGGTGCAAGCATTGGTAGG
TTATCCCACGTAGCCGGTCAACATCGACCTCGCCTCTTGGCCGACTGAGA
ATCGGGGGGAGGTGTTCTTTAGCCCTTTGAGGGTGACGGGGCACTGATGT
GATGCGGTGTGATGTGATGTGATGTGATGTCAAACTACAGTACATGTGAG
TGCACGTCACATCACATCCATCGCATCACATTCGTGTCTCGTCGTCGTCC
ACAAAGGGTTAAGTAGTGCCTACTGCGAAGTAGTACAGTACAGGAGATGG
TCTCTACAGTAAGTACTTCGTACCTCCGGAAGTACAGCACAGCACAGCAC
CTCCAAGAAAAACTGAACAACTGTACAGTATTCACAGGAACAACACAAGG
CGAAGAGCAGGTCACGTCACTACAAACCTCAACAGTGGGCCTTCCTTATA
GCTCGCCAGGGAAATTTGTGTGTGTACAGTAGTTACCAATAAGCAAGTAC
TGCCCTTCACTCCTCCCCCCTCTACCCGCTGTGCCGGCCCATGCCTTGTC
ACCAACCGGCGAAGGTGGAGGAGTGGGATGTCCTCTCTGGGAGGGCCAGG
GACCTGCAAGACAAACGGAACAACAGCACAGTATGTAGTTATAAGAAAGT
ACTGCCCTTCCCTCCTTCCCCCTCTACCCCCGCGTGCCTTGTCGACAATT
GGCCCAGGTGGAGGAGTGGGATGGCCAAGACAAACTGAACAACTGTGCAG
CTGTAGTGACAAGCAAGTACTGTCCTTCCCTCCTCCCCCCTCTACCCCCG
CGTGCCATGTCAACAATTGGCCAAGGTGGAGGAGTGGGATGGCCAAGACA
AATTGAACAACTGTGCAACTGCAGTGACAAGCAAGTACTGTCCTTCCCTC
CTCCCTCTAACCCCGCGTGCCTTGTCAACAACCGGCGTAGGTGGAGGAGT
GGGATGTCCTCTCTGAGAGGGCCAGGGACCTGCAAGACAAACTGGAACAA
CTGTGCAGCATGTAGTTATAAGAAAGTACTGCCCTTCTCTCCTCCCCCCT
CTACCCCCGCGTGCCTTGTCAACAATTGGCCAAGGGGGAGGAGTGGGATG
GCCAAGACAAACTGAACAACTGTGCAACTGTAGTGACAAGCAAGTACTGT
CCTTCCCTCCTCCCCCCTCTACCCCCGCGTGCCTTGTCACCAACCGGCGA
AGGTGGAGGAGTGGGATGTCCTCTCTGAGAGGGCCAGGGACCTGGAGCGG
CAGCTGGCAGAGGCAAGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:902033..908201+

>mRNA_S-ischiensis_contig1.146.1 ID=mRNA_S-ischiensis_contig1.146.1|Name=mRNA_S-ischiensis_contig1.146.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1554bp|location=Sequence derived from alignment at S-ischiensis_contig1:902033..908201+ (Schizocladia ischiensis KU_0333)
ATATCCCGTTTGAGGGCGAACAATGGGGAAGAGGACAAGTATCCTGTATA
TCCCGTTTGAGGGCGAACAATGGGGAAGAGGACAAGTATCCTGTGTCCCT
CGCGGACCTCCTGGAGACCTTGGAGGAGGCCAGGCAGGCCATGGAGGGCA
AGGACGCGCGGTTGCGGCAGCTCCAGGGGGCGTGGGAGGAGGACCAGGCT
GGCCGGCAGCAGGCTGAGACCGAGGTCCCTCGCGGACCTCCTGGAGACCT
TGGAGGAGGCCAGGCAGGCCATGGAGGGCAAGGACGCGCGGTTGCGGCAG
CTCCAGGGGGCGTGGGAGGAGGACCAGGCTGGCCGGCAGCAGGCTGAGAC
CGAGTTACGCCTGGCGTCCATGGAGCTGGAGGGCCTGCGCGTGCTCTCCC
GCGACCTCACCGCCCGCGCGGACGAGCGGGACGCCGCGGTCGCCCGGGCG
GCCCGCCTGACGGGGGAGCTGGAGGACCACCGCAGGCGTCTGTCTATTGC
CACGAACAAAGGCGACGCGGCCGCCGGGCGCGCGGAGGCGGCGGAGGCGG
AGGCCAGGGAGGGCACGGCCAGGGTTTCTGAGCTTGAGCAGGCGGTGCGG
GGGCTGAGCGAGGAGGCACAGTTACGCCTGGCGTCCATGGAGCTGGAGGG
CCTGCGCGTGCTCTCCCGCGACCTCACCGCCCGCGCGGACGAGCGGGACG
CCGCGGTCGCCCGGGCGGCCCGCCTGACGGGGGAGCTGGAGGACCACCGC
AGGCGTCTGTCTATTGCCACGAACAAAGGCGACGCGGCCGCCGGGCGCGC
GGAGGCGGCGGAGGCGGAGGCCAGGGAGGGCACGGCCAGGGTTTCTGAGC
TTGAGCAGGCGGTGCGGGGGCTGAGCGAGGAGGCACAGGCCCAGCACCAG
GAGCTTGAAACGTTGAGGGCGTCCAAGGAAGAGACGCGCTTGAAGGTGGC
CAAGATGGAGCGGGAGCTGGACCAGAGCAGGGCCAAGGGCGCCCTGTTTG
ACCAGCGCCTCGAGGCCCAGCACCAGGAGCTTGAAACGTTGAGGGCGTCC
AAGGAAGAGACGCGCTTGAAGGTGGCCAAGATGGAGCGGGAGCTGGACCA
GAGCAGGGCCAAGGGCGCCCTGTTTGACCAGCGCCTCGAGTCCTTGGAGA
GGGAAAAGCGGGACCTGCAGGCCGGGGTGCGGGCACGTGACGGGCGGCTC
GAGGAGTTGGAGGAGCTTCTGGAGGCCGCGGAGGGCAAGGCAAGGGCGTT
GGAGGAGGAGAAGGCCGGTCTCCTCTCCAAGTCCTTGGAGAGGGAAAAGC
GGGACCTGCAGGCCGGGGTGCGGGCACGTGACGGGCGGCTCGAGGAGTTG
GAGGAGCTTCTGGAGGCCGCGGAGGGCAAGGCAAGGGCGTTGGAGGAGGA
GAAGGCCGGTCTCCTCTCCAAGGTGGAGGAGTGGGATGTCCTCTCTGAGA
GGGCCAGGGACCTGGAGCGGCAGCTGGCAGAGGCAAGAGTGGAGGAGTGG
GATGTCCTCTCTGAGAGGGCCAGGGACCTGGAGCGGCAGCTGGCAGAGGC
AAGA
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