mRNA_S-ischiensis_contig1.144.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.144.1
Unique NamemRNA_S-ischiensis_contig1.144.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.144.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.960e-23
Identity = 62/158 (39.24%), Postives = 83/158 (52.53%), Query Frame = 1 
Query:   19 SLAGGRDRVMSWVKDLRAVQ--RQRAAGGADEAEVAELRRVLPHLRLEGQG---------AHREPLDREALVHSAMVVAKAQAREDG----------------VDRVVGTGRDKHLLRLEWFRSSEGGRFTQIEGVCGPYYQLSADDVGSRICIKCTL 411
            +LA  R+R+M W+K+LR      + A    +E  + ELRR +  L L+            A   P   ++   +A   A+    E+                 VDRV+GTG DK L +L WFRSS GG F +I+GV GP+YQ SADD+GSRICIKCTL
Sbjct:  347 ALAVNRERMMGWMKELRPKDWSPKEAERAVEEESIQELRRAVRRLYLDAPDPAIHTAIIVARARPSAPKSAAAAAEXXAEGPTAEEAAAAVGEVAETPKEAGAVDRVIGTGADKRLTKLVWFRSSSGGGFAEIKGVEGPFYQPSADDLGSRICIKCTL 504
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BLAST of mRNA_S-ischiensis_contig1.144.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.560e-12
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  283 LLRLEWFRSSEGGRFTQIEGVCGPYYQLSADDVGSRICIKCTL 411
            +  L WFRSS GG F +I+GV GPYYQ SADD+GSRICIKCTL
Sbjct:    8 VAALVWFRSSSGGGFAEIKGVEGPYYQPSADDLGSRICIKCTL 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZQ7_9PHAE6.960e-2339.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ4_ECTSI6.560e-1272.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:894582..896937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_008740.1
Hectar predicted targeting categoryother localisation
Exons4
Model size442
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.144.1prot_S-ischiensis_contig1.144.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 894582..896935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.8206072-CDS-S-ischiensis_contig1:894581..8946811622815344.8206072-CDS-S-ischiensis_contig1:894581..894681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 894582..894681 +
1695739648.4853766-CDS-S-ischiensis_contig1:894581..8946811695739648.4853766-CDS-S-ischiensis_contig1:894581..894681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 894582..894681 +
1622815344.8323174-CDS-S-ischiensis_contig1:895135..8952411622815344.8323174-CDS-S-ischiensis_contig1:895135..895241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 895136..895241 +
1695739648.524465-CDS-S-ischiensis_contig1:895135..8952411695739648.524465-CDS-S-ischiensis_contig1:895135..895241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 895136..895241 +
1622815344.8457613-CDS-S-ischiensis_contig1:895917..8960021622815344.8457613-CDS-S-ischiensis_contig1:895917..896002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 895918..896002 +
1695739648.5708737-CDS-S-ischiensis_contig1:895917..8960021695739648.5708737-CDS-S-ischiensis_contig1:895917..896002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 895918..896002 +
1622815344.8552897-CDS-S-ischiensis_contig1:896788..8969351622815344.8552897-CDS-S-ischiensis_contig1:896788..896935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 896789..896935 +
1695739648.589801-CDS-S-ischiensis_contig1:896788..8969351695739648.589801-CDS-S-ischiensis_contig1:896788..896935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 896789..896935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.144.1

>prot_S-ischiensis_contig1.144.1 ID=prot_S-ischiensis_contig1.144.1|Name=mRNA_S-ischiensis_contig1.144.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
SAADGLSLAGGRDRVMSWVKDLRAVQRQRAAGGADEAEVAELRRVLPHLR
LEGQGAHREPLDREALVHSAMVVAKAQAREDGVDRVVGTGRDKHLLRLEW
FRSSEGGRFTQIEGVCGPYYQLSADDVGSRICIKCTLPEDGGSSGG
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mRNA from alignment at S-ischiensis_contig1:894582..896937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.144.1 ID=mRNA_S-ischiensis_contig1.144.1|Name=mRNA_S-ischiensis_contig1.144.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2356bp|location=Sequence derived from alignment at S-ischiensis_contig1:894582..896937+ (Schizocladia ischiensis KU_0333)
TCGGCGGCGGACGGATTGTCGCTGGCCGGGGGGCGGGATCGCGTGATGAG
CTGGGTGAAGGACCTCCGGGCGGTGCAGAGGCAGAGGGCGGCTGGGGGAG
GTGAGTGGGTGGCAGGTCGGGGGGGGGGAGGAGTGGAGAGGGGAGGGCTG
GGCTGGGCTGTGCTTGCCCCCGGGGGTATCAGAGAGGGAGGGAGGGAGAG
AGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTACTCGTACAAGACCGTA
GCGTGTAACCTCGCGGTATCCCCTTGCCGCGCTGACTGCCCGCCCCTCTG
CCTGCCTGTCTCCCTACCTGCCTCTGCCCGCCTGCCCATCCGGCTGCCTC
GCCGCCTCCCTCCCTGCTTGTGCCTCTGTTTCCCTTCCTCCCCTCTCCCT
CCCTCCCTCCCCCCCCCCCCCCCCCTCCCTCCCCCCTCCCTCCCTGCCTC
CCTCCCTCCCTCTCCCCCTCGCTCCCTCCCTCCCTCCCTCCCTTCCTCCC
TCCCACCCTCCCTCTCTCCCTCTTTCCCTCCCTGCATGCCCCGGGGGAGA
GCAGCGGACGAGGCGGAAGTGGCGGAACTCAGACGCGTCTTGCCGCACCT
GCGACTCGAGGGGCAGGGAGCCCACAGAGAGCCACTGGATAGAGAGGCCC
TGGTGCACAGGTGCGCTGATGCAGGTCCAACAAGCTGTGGACATTTTGAA
ACTGATTCTTTTAACTATGTACTTGGGGACATTTGGCAACTGGTTCTCTG
AACACTTGGGAGACATTTTGAAACCGGTTCTCTTGACTACAGTAACTACT
TGTAGGCATTTTGAACCTGATTCTCTGAACTTCTTGGGGATAAACTGATT
ATCTGAACTATTTGTGCTGGCTGGCGCGGCGGCGGGGCGGGGGTGGGGTT
GGGGATGGGGATGGGCATGGGCGCTCCTTTCCGCAGCGCTCGGCTGACTG
ACGCAGTGATGATGCTTGTCTGCGCAAGTCCCCTGGGCCGTCCGCTGTGC
TCACCTGCTAGGGCTGCAACGCCCGTCTATTTTCTTTCCCCCAGCTCGCT
GTCTGTTCTCCTGTCTGCCGCTGTAGTGTGGCTGTAGTGCTTTACTCTAT
TGTAGGAGAGGACCCCTAGCCACTAGACCACCCAGCGCTGGGTGGTCTAG
TGGTTAGGGGTCCTCTCCTAAAGCATGACAAAAAGGGCAAGGTCGGGGAG
GGCCCGGATCCCGTTATTACCTGCGCATACGTGTGTGTGCTGAAAAACAC
GACACGATGATGACGTTTGTATGCTTCACAAGTTCTCCGAGTTGACTCCG
GTGGTGGTCGCCTGATTTGGCGCTTGCGTGCGACAGCGCCATGGTGGTGG
CCAAGGCCCAGGCTAGGGAGGACGGGGTGGACCGGGTGGTGGGCACAGGC
CGGGACAAGCACCTCCTCCGCGTGAGTGTGTGTGTGTGCGTGCGTGCGTG
CATGCGTGCTTGCGTGCTTGCAGGCTTGCGTACGGGCGTGTATGCATGCA
TGTGTGTGTGTGTGCATGTGTGCGTGTGTGCGTGCATGTGTGCGTGCGTG
CGTGCGTGCGTGCTTGTAGGCTTGCATGCGTGCGTGTATGCATGCATGTG
TGTGTGTGTGTGTGCATGGGCGCGCGTGTCTGTACCTCCAAAGTGCTTCG
AAGTACTCATTTAGTATGCGTGTACTCGTGTGCGTGTGTGAGTATGTGAT
CACGCATGTGGGGTGGGCGTGATCACTCCGTCCTCGAGGGGAGAGTGAGA
GAAGATTCGCCACCCCAGAACAGGGCGGGACATCCCCCCCTCTCCCCCCA
GGCCTTGCCAGGGGGTCGGAGGTGTATGATGCGCGAGCGGTCCACTGCTT
GCTGCTTGGAAGTACCGAGTCCAGTATGAGTACCTCGCAGTACTTGATTC
TTCAAAGTAGGTTCTCCGAAGTGCTCGGCGTACAAGTAGTAGCGGCAACA
CTTTGGACTACTACTGTAGTGGAAGGCAATGAAGTACTTTGAAGCACTCG
GTACCCGTTTTCACGTACGAGTAGGCGCATCGACGTAGTTGTCGTCGTCG
CTTTGTGTTTGCTGGAGCCCTAAACGACCATCGGCCACGCGCCATCTTCT
GACCCCCGACTTCACCGCTCCATCTGTACCCTTTCGGCCGTCGGCCGTCC
CCCCCCCCTCCACCCCCCCGTGTACCCCCGCGGCGGCGGCGGCGGCGGCG
GGCGCAGCTGGAATGGTTCCGCTCCTCGGAGGGCGGGAGGTTCACGCAGA
TCGAGGGCGTGTGCGGCCCCTACTACCAGCTGAGCGCGGACGACGTGGGC
TCGCGCATCTGCATCAAGTGCACGCTGCCGGAGGATGGCGGCAGCAGCGG
CGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:894582..896937+

>mRNA_S-ischiensis_contig1.144.1 ID=mRNA_S-ischiensis_contig1.144.1|Name=mRNA_S-ischiensis_contig1.144.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig1:894582..896937+ (Schizocladia ischiensis KU_0333)
TCGGCGGCGGACGGATTGTCGCTGGCCGGGGGGCGGGATCGCGTGATGAG
CTGGGTGAAGGACCTCCGGGCGGTGCAGAGGCAGAGGGCGGCTGGGGGAG
TCGGCGGCGGACGGATTGTCGCTGGCCGGGGGGCGGGATCGCGTGATGAG
CTGGGTGAAGGACCTCCGGGCGGTGCAGAGGCAGAGGGCGGCTGGGGGAG
CGGACGAGGCGGAAGTGGCGGAACTCAGACGCGTCTTGCCGCACCTGCGA
CTCGAGGGGCAGGGAGCCCACAGAGAGCCACTGGATAGAGAGGCCCTGGT
GCACAGCGGACGAGGCGGAAGTGGCGGAACTCAGACGCGTCTTGCCGCAC
CTGCGACTCGAGGGGCAGGGAGCCCACAGAGAGCCACTGGATAGAGAGGC
CCTGGTGCACAGCGCCATGGTGGTGGCCAAGGCCCAGGCTAGGGAGGACG
GGGTGGACCGGGTGGTGGGCACAGGCCGGGACAAGCACCTCCTCCGCCGC
CATGGTGGTGGCCAAGGCCCAGGCTAGGGAGGACGGGGTGGACCGGGTGG
TGGGCACAGGCCGGGACAAGCACCTCCTCCGCCTGGAATGGTTCCGCTCC
TCGGAGGGCGGGAGGTTCACGCAGATCGAGGGCGTGTGCGGCCCCTACTA
CCAGCTGAGCGCGGACGACGTGGGCTCGCGCATCTGCATCAAGTGCACGC
TGCCGGAGGATGGCGGCAGCAGCGGCGGCCTGGAATGGTTCCGCTCCTCG
GAGGGCGGGAGGTTCACGCAGATCGAGGGCGTGTGCGGCCCCTACTACCA
GCTGAGCGCGGACGACGTGGGCTCGCGCATCTGCATCAAGTGCACGCTGC
CGGAGGATGGCGGCAGCAGCGGCGGC
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